ISGlo2

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAVG01000003 ND Geobacter lovleyi
Geobacter lovleyi SZ
DNA section
IS Length : 1061 bp

Ends


IR Length : 23

IRL : CCTGATTAGCGCCAATCTTCCGCAGATTGGCAAAACGACATATTTGGTCA
IRR : CCTGATTAGCGCCAATCTTCCGCTTGGCGAAGTTTTGCTTCCGGCAGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CAAAAGGAAAATATCATTATGACAAAAAT8

DNA sequence

CCTGATTAGCGCCAATCTTCCGCAGATTGGCAAAACGACATATTTGGTCACTACAGCATGTTAAGATTCATGGCAACTTATGCGGAGGTGGTTGCCATGA
AAATGAATCTGATACAGTTTCAGCCAGGACTTAGTCTGAACAAGTTCCTTGAGTTGTACGGCTCTCAGGAACAATGTGAGACGGTTGTAGAGTCAGCCCG
TTGGCCCGGCGGTTTTACCTGTTCCAAATGTGGTAATACTCACCACTTCACCTATCGGCGTGGTGTTTCAGTCAAGGTGTTCCAGTGCAGTTCCTGTAGA
ACCCAGACTACCCTTACTGAGGGGACGCTCTTTCACTCAACAAAGTTACCGCTGACGATCTGGTTCCAGGCCATGTTCTTTCTGACACAGAGCAAGAATA
ATGTATCGATCCTGGAACTCCGACGTCTGGCTGGTATCAGCTATCGTGCTGCCTGGCGCATCAAGCACAAAATAATGCAGGCCATGTTTGAACGTGAGCA
AACAACCGTATTATCAGACCGCGTTGAGGTAGATGATGCCTACCTCGGCGGTGAACTACCCGGTGGCAAGGTTGGCCGCGGCTCTGAAAACAAGGTGCCG
TTTATTGCTGCTGTACAGACCAACAACCAAGGCCATCCACTCTATGCGGTATTCAGTACGGTAAAGAGCTTCTGCAAGGAAGAAGTCGAAATATGGGCCA
AAAGTTTCCTTGCACCATCAGCTTTAATCGTATCCGATGGCCTCTGGTGTTTCCAGGCAGTTGAGGCTGCCGGATGTGTTCATCAGCGTGAGGTCGTTGG
TAAAGACAGAAAAAGTACCAGCATGAAATGCTTCAGCTGGATCAATACGGTTCTCGGCAATCTGAAAAACTCTATAACTGGCACCTACCATGCCTTTGAC
TTTGAGAAATATGCCTATCGCTACCTTGGCGAGTTTCAATATCGTTTCAACCGCCGCTTTGATCTGGCTGGCATGCTAAAGCGACTCGTGGCGGCAGCGG
TCAAAACAAAGAAGCTGCCGGAAGCAAAACTTCGCCAAGCGGAAGATTGGCGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
960 bp319 aa971056+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKMNLIQFQPGLSLNKFLELYGSQEQCETVVESARWPGGFTCSKCGNTHHFTYRRGVSVKVFQCSSCRTQTTLTEGTLFHSTKLPLTIWFQAMFFLTQSK
NNVSILELRRLAGISYRAAWRIKHKIMQAMFEREQTTVLSDRVEVDDAYLGGELPGGKVGRGSENKVPFIAAVQTNNQGHPLYAVFSTVKSFCKEEVEIW
AKSFLAPSALIVSDGLWCFQAVEAAGCVHQREVVGKDRKSTSMKCFSWINTVLGNLKNSITGTYHAFDFEKYAYRYLGEFQYRFNRRFDLAGMLKRLVAA
AVKTKKLPEAKLRQAEDWR

 

Blast result :
Comments
ISGlo2 is 74% aa similar to ISGur2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.US DOE Joint Genome Institute . (2006) Direct submission GenBank.