ISGlo2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAVG01000003 | ND | Geobacter lovleyi | Geobacter lovleyi SZ |
DNA section
IS Length : 1061 bp
Ends
IR Length : 23
IRL : CCTGATTAGCGCCAATCTTCCGCAGATTGGCAAAACGACATATTTGGTCA
IRR : CCTGATTAGCGCCAATCTTCCGCTTGGCGAAGTTTTGCTTCCGGCAGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAAAGGAAAA | TATCATTA | TGACAAAAAT | 8 |
DNA sequence
CCTGATTAGCGCCAATCTTCCGCAGATTGGCAAAACGACATATTTGGTCACTACAGCATGTTAAGATTCATGGCAACTTATGCGGAGGTGGTTGCCATGA
AAATGAATCTGATACAGTTTCAGCCAGGACTTAGTCTGAACAAGTTCCTTGAGTTGTACGGCTCTCAGGAACAATGTGAGACGGTTGTAGAGTCAGCCCG
TTGGCCCGGCGGTTTTACCTGTTCCAAATGTGGTAATACTCACCACTTCACCTATCGGCGTGGTGTTTCAGTCAAGGTGTTCCAGTGCAGTTCCTGTAGA
ACCCAGACTACCCTTACTGAGGGGACGCTCTTTCACTCAACAAAGTTACCGCTGACGATCTGGTTCCAGGCCATGTTCTTTCTGACACAGAGCAAGAATA
ATGTATCGATCCTGGAACTCCGACGTCTGGCTGGTATCAGCTATCGTGCTGCCTGGCGCATCAAGCACAAAATAATGCAGGCCATGTTTGAACGTGAGCA
AACAACCGTATTATCAGACCGCGTTGAGGTAGATGATGCCTACCTCGGCGGTGAACTACCCGGTGGCAAGGTTGGCCGCGGCTCTGAAAACAAGGTGCCG
TTTATTGCTGCTGTACAGACCAACAACCAAGGCCATCCACTCTATGCGGTATTCAGTACGGTAAAGAGCTTCTGCAAGGAAGAAGTCGAAATATGGGCCA
AAAGTTTCCTTGCACCATCAGCTTTAATCGTATCCGATGGCCTCTGGTGTTTCCAGGCAGTTGAGGCTGCCGGATGTGTTCATCAGCGTGAGGTCGTTGG
TAAAGACAGAAAAAGTACCAGCATGAAATGCTTCAGCTGGATCAATACGGTTCTCGGCAATCTGAAAAACTCTATAACTGGCACCTACCATGCCTTTGAC
TTTGAGAAATATGCCTATCGCTACCTTGGCGAGTTTCAATATCGTTTCAACCGCCGCTTTGATCTGGCTGGCATGCTAAAGCGACTCGTGGCGGCAGCGG
TCAAAACAAAGAAGCTGCCGGAAGCAAAACTTCGCCAAGCGGAAGATTGGCGCTAATCAGG
AAATGAATCTGATACAGTTTCAGCCAGGACTTAGTCTGAACAAGTTCCTTGAGTTGTACGGCTCTCAGGAACAATGTGAGACGGTTGTAGAGTCAGCCCG
TTGGCCCGGCGGTTTTACCTGTTCCAAATGTGGTAATACTCACCACTTCACCTATCGGCGTGGTGTTTCAGTCAAGGTGTTCCAGTGCAGTTCCTGTAGA
ACCCAGACTACCCTTACTGAGGGGACGCTCTTTCACTCAACAAAGTTACCGCTGACGATCTGGTTCCAGGCCATGTTCTTTCTGACACAGAGCAAGAATA
ATGTATCGATCCTGGAACTCCGACGTCTGGCTGGTATCAGCTATCGTGCTGCCTGGCGCATCAAGCACAAAATAATGCAGGCCATGTTTGAACGTGAGCA
AACAACCGTATTATCAGACCGCGTTGAGGTAGATGATGCCTACCTCGGCGGTGAACTACCCGGTGGCAAGGTTGGCCGCGGCTCTGAAAACAAGGTGCCG
TTTATTGCTGCTGTACAGACCAACAACCAAGGCCATCCACTCTATGCGGTATTCAGTACGGTAAAGAGCTTCTGCAAGGAAGAAGTCGAAATATGGGCCA
AAAGTTTCCTTGCACCATCAGCTTTAATCGTATCCGATGGCCTCTGGTGTTTCCAGGCAGTTGAGGCTGCCGGATGTGTTCATCAGCGTGAGGTCGTTGG
TAAAGACAGAAAAAGTACCAGCATGAAATGCTTCAGCTGGATCAATACGGTTCTCGGCAATCTGAAAAACTCTATAACTGGCACCTACCATGCCTTTGAC
TTTGAGAAATATGCCTATCGCTACCTTGGCGAGTTTCAATATCGTTTCAACCGCCGCTTTGATCTGGCTGGCATGCTAAAGCGACTCGTGGCGGCAGCGG
TCAAAACAAAGAAGCTGCCGGAAGCAAAACTTCGCCAAGCGGAAGATTGGCGCTAATCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 97 | 1056 | + | No |
Chemistry : DDE
ORF sequence :
MKMNLIQFQPGLSLNKFLELYGSQEQCETVVESARWPGGFTCSKCGNTHHFTYRRGVSVKVFQCSSCRTQTTLTEGTLFHSTKLPLTIWFQAMFFLTQSK
NNVSILELRRLAGISYRAAWRIKHKIMQAMFEREQTTVLSDRVEVDDAYLGGELPGGKVGRGSENKVPFIAAVQTNNQGHPLYAVFSTVKSFCKEEVEIW
AKSFLAPSALIVSDGLWCFQAVEAAGCVHQREVVGKDRKSTSMKCFSWINTVLGNLKNSITGTYHAFDFEKYAYRYLGEFQYRFNRRFDLAGMLKRLVAA
AVKTKKLPEAKLRQAEDWR
NNVSILELRRLAGISYRAAWRIKHKIMQAMFEREQTTVLSDRVEVDDAYLGGELPGGKVGRGSENKVPFIAAVQTNNQGHPLYAVFSTVKSFCKEEVEIW
AKSFLAPSALIVSDGLWCFQAVEAAGCVHQREVVGKDRKSTSMKCFSWINTVLGNLKNSITGTYHAFDFEKYAYRYLGEFQYRFNRRFDLAGMLKRLVAA
AVKTKKLPEAKLRQAEDWR
Blast result :
Comments
ISGlo2 is 74% aa similar to ISGur2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.US DOE Joint Genome Institute . (2006) Direct submission GenBank.