ISPtu1

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAOH01000001 ND Pseudoalteromonas tunicata
Pseudoalteromonas tunicata D2
DNA section
IS Length : 1351 bp

Ends


IR Length :

IRL : TGACGAATCCCCACAATTTGATAATATAAATCAATAAGATAATATAAAAA
IRR : TGAGGGATCCCCACAATTTTATCCAAGCTACAAGCACTCACGGCAATCCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGTCAGGTCCGGACTTGACC0

DNA sequence

TGACGAATCCCCACAATTTGATAATATAAATCAATAAGATAATATAAAAAAAATAGTTGAAGTGAAGTGCATAGCTAATTTTGATCTTATATGCTTTTTC
CGACCAAAGAAATTACATACTAAATCGACTATGCACTTAAATAAATTATTACATAAAACATTTTCTAATACAGTAGGTGTTATTGATAAGCGTAACCACT
GCACATTAATGAAAGCAGCAGCAACACTCTGCCAACATACGTTCATATCCATTGCTGCTTTGGGAAGAAAGCTAAAGAGCAATGCGAAGGTTAAACACAA
TATTAAACGAATAGATAGGTTATTTGGCAACCCTCGCGTCCAGTTCGCCCGCTATCACTATTACCAAGAAATCACTCACCGCGTGATTGGTCAAATTAGA
CGCCCATGCGTGACGATTGATTGGTCTGGGTTAACACCCTGTGGCGAGTTTCATTTATTACGGGCAGCGGTGCCAGTTAAAGGTCGAGCAATGACAATCT
ATGAGCAAAGTTTTCGTGAATGTGAATACATGAAGCAAAGCGTACATAAGGATTTCATCAAAACACTTAAATCAATATTACCTTCTGATTGCAAGCCGAT
CATTGTTACCGATGCAGGATTTCGCAACCCTTGGTTTAAGTTAGTGCTTAAATTTGGTTGGGATTTTGTAGGTAGAGTGAGGCATCAAACACAATATCAA
AAGCCAGAAGATGATACGAGTTGGTTACCAGTAAAAACACTTTATTCTAAAGCGACAGCAAAACCCGTTTATCTATTTGAAACACAACTCGCTAAAGCCA
ATTCATTGAGTGGTCACTTTTACTTGTTTAAATCAAAGCCTAAACAAAGAAAAAAGAAAAATCTTCGAGGAAAAACGATTCGCTGCAGCGTAAGCTTGAA
ACATGCTAAAGGCGCCACGGAGCCATGGTTATTATTTACCTCACTGTGCAATATTAATTATTCAGCGCAAGATATGGTTAAAATTTACAGCCAGCGAATG
CAGATAGAAGAGTCCTTTCGAGACTTAAAAAACACGAGTAATGGTTTGAACTTACGTCATTGTCGTAGCTATGAAAAAGGCCGTTTAAATGTCGCATTAT
TGATTGCATTAATTGCTAATTTTATCCTTTGGCTAGCAGGTTTAACGGCAAAAATATTAAATGTGCATAGAAGCTTTCAGGCGAATACGATAAAGAATAG
AAACGTGCTGTCTAGCTTTAGTTTGGGGACGCAATACTTCGAAAAATTTGGTTATAAAATAAAACTGAAAACGTTTTTAGAAGCACTCAAGCAATTAAAT
AAGGATTGCCGTGAGTGCTTGTAGCTTGGATAAAATTGTGGGGATCCCTCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1194 bp397 aa1301323+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHLNKLLHKTFSNTVGVIDKRNHCTLMKAAATLCQHTFISIAALGRKLKSNAKVKHNIKRIDRLFGNPRVQFARYHYYQEITHRVIGQIRRPCVTIDWSG
LTPCGEFHLLRAAVPVKGRAMTIYEQSFRECEYMKQSVHKDFIKTLKSILPSDCKPIIVTDAGFRNPWFKLVLKFGWDFVGRVRHQTQYQKPEDDTSWLP
VKTLYSKATAKPVYLFETQLAKANSLSGHFYLFKSKPKQRKKKNLRGKTIRCSVSLKHAKGATEPWLLFTSLCNINYSAQDMVKIYSQRMQIEESFRDLK
NTSNGLNLRHCRSYEKGRLNVALLIALIANFILWLAGLTAKILNVHRSFQANTIKNRNVLSSFSLGTQYFEKFGYKIKLKTFLEALKQLNKDCRECL

 

Blast result :
Comments
ISPtu1 is 58% aa similar to ISShfr1.
References
1] Moran,M.A., Kjelleberg,S., Egan,S., Saunders,N., Thomas,T., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C.(2006) Direct submission GenBank.