ISSod9
- Family Tn3
- Group
Isoform Synonym(s) TnSod9
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004349 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 4412 bp
Ends
IR Length : 39
IRL : GGGGTCGCCTCAGAAAACGGAAAAAATCGTACGCTAAGCATGCGCAGAGG
IRR : GGGGTCGCCTCAGAAAACGGAAAAAATCGTACGCTAAGCCGGTGATAGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGGTCGCCTCAGAAAACGGAAAAAATCGTACGCTAAGCATGCGCAGAGGCAGGGAGCCAGCGGTATAGCGTAGGAACCGACACGCCAAGATTCTTAGCC
ACATCCTTGGGGGGGACTCCACTGGCTAATAGCTTTTTGGCTGATTCGATCTTGCTGTCGGTCATCTTCGGCTTGCGACCGCCTTTACGACCGAGTTGTC
TGGCAACGTCCAACCCCGCACGGGTTCTTTCGACGATCAAGTCTCGTTCCATCTCTGCGAGGCTTGCCATGACATGAAAAAAGAATCGGCCCGATGGCGT
GCCGGTATCGATAGAATCGGTGAGACTCTTAAACTGGACGTTTTGTTTGTGCAGATCGCTGACCAGCTCTACCAGTTGTTTGACTGACCGGCCCAATCTA
TCCAGCTTCCAAACAACCAATGTATCCCCTTCGCGCAGTATTTCAAGGGCTTTGCTCAAACCAAGCCTGTCAGCCCGAGTACCACTGATTGTATCTTCAA
ACACTTTTTCGCACCCCGCTTTAAGCAAGGCTTCTCGCTGAAGTTCTAGGTGCTGATCTTGTGTTGATACTCTTGCATAACCGATCAGCATAAATCATGA
CCTTCATTTTTATCTACATCATATCTAACCGCTGCCAGCTGCGATAATAATGTTGGCAGCGCCGTTTGTACCGTATCCCAAACCACATCAAGGTTTATAT
CGAAATAACCATGAGCAATGCGATTGCGCATTCCACGCATACTACGCCATGGAACGTCTGAATGGGCAATGACAAACTCAGAATAACCGTCCATCACCTT
AGTTGATGCTTCACCAATTACGATCAGACTCATGATGACAGCCTGTTGGGTACGTTTATCCACTAAAAATTCATCTTTATCCAACCCTTCAACAAAATAA
CACGCATCGGAAGCGGCTTGGTGCATGTGGTCAAGATAATCAGGTAAACGGTTCACCTTCATACAGGTCGTGCCTCCGCGAGTACTTGGGCTCGAAATTT
CGGTGGTAAATCGCCAGGGGTCAGTAGATCAACTTGAAGGCCGAGCAGCGATTCAAGTTCATCTTGTAAACCTCCCAAGTCAAAAAGTGTCGCTCCAGGG
AGGGCATCAACTAATAAGTCCAGATCACTACCATCGAGATCTGTCCCATCGAGCACTGAACCAAAAACACGTGGATTGGTTACGCGAAAACGACTCGCGG
TCTCACGAATAACGCTTCGCTTAAGAGCGAGCACTGCGGATGGTCTCATAATGGCTATTTCCTTATTATCAAAACTCGTTGAAATGATATGCAACTGAGA
ATAATATTTCAAGAATGATTTTTGAGAATCATAACCCCTTGATCTGCTGTTGTGTCCGAGAGCTCTTGTCGTTGCTCTTACAAACCTACGTTTTCAAGAA
GAAGGAAACCGCATGCCTCGCCGCTCAATCCTATCCGCCGCAGAGCGAGACAGCCTGCTGGTGTTACCCGATACCCAAGACGAACTGATCCGCCACTATA
CGTTTAGCGAACCCGATCTATCACTGATACGGCAGCGGCGCGGTGATGCTAACCGCTTGGGGATCGCGGTACAGTTATGCTTGCTGCGCTTCCCAGGCCA
GGGCTTGTTGCCCGACGCTACGGTGCCAATGCCTCTGCTGCAATGGATAGGACAACAGTTACAGCTCGATCCTGTATGTTGGCCGCAGTATGCCGAGCGA
GAGGAGACACGGCGCGAGCACTTGCTCGAACTGCGGGTGTATCTTGGCATGGAACCATTTAGTCAAGTGCACCATCGGCAGGCTGTCCATACCACGACCG
AACTGGCCTTGCAGACTGACAAGGGCATAGTGTTGGCCAACAGCGTAGTCGAGACGCTGCGTCATAAACACATCATTTTGCCAACGTTAGATGTTGTCGA
GCGCGTCTGTGCCGAGGCTCTAACCCGTGCAAACCGGCGTATCTACGACACCTTGACCGAACCACTATCAGGCTCGCACCGCCACCGGCTCGATGATCTG
CTCAAGCTTCGGGACAACAACAAAACGACTACGCTGGCTTGGCTTCGCCTGTCTCCGGTCAAACCCAATTCGCGGCACATGCTTGAGCACATCGAACGAC
TCAAGGTATGGCAGGCGCTTGATCTTCCTATTGGTGTCGATCGTCTGATCCACCAAAACCGATTGCTCAAGATCGCCCGAGAAGGCGGACAGATGACCCC
CGCCGATTTGGCCAAGTTCGAGCCACAACGCCGCTATGCGACTTTGGTTGCGCTAGCCATCGAGGGGATGGCCACTGTTACAGATGAAATTATTGATCTG
CATGACCGCATCATGGGCAAGCTGTTCAATGATGCCAAGAAGCGACATCAGAAACAGTTTCAGGCATCGGGGAAGGCTATCAATGCCAAGGTGCGCCTGT
TCGGCCGTATCGGCCAAGTGTTGATCGACGCTAAGCAAGCGGGTGATGATCCGTTTGCTGCTATCGAGGGCGTCATATCCTGGGAGGCCTTTGCCAAGAG
CGTGACAGAGGCACAATCGCTCGCGCAGCCCGAGGAATTCGATTTCCTGTACCGTCTCGGTGAGAGCTACGCCACACTACGCCGTTACGCACCGACCTTC
CTCACCGCGCTAAAGTTGCGGGCCGCACCGGCTGCCAAAGGTGTATTGGAGGCCATCGAAGTACTGCGCAGCATGAACAACGACAACGCCCGAAAAGTAC
CTGCAGATGCGCCAATTGATTTCATCAAGCCGCGTTGGCAGAAGCTGGTGATAACCGATACCGGCATCGACCGGCGTTACTACGAGCTATGCGCGCTGTC
GGAGATGAGGAACGCATTGCGTTCCGGTGACATCTGGGTACAGGGATCGCGCCAGTTCAAGGACTTCGAGGACTACCTTGTACCACCCGCGAAATTCGTC
AGTCTCAAGCAGACCAATCAATTGCCGCTGGCCGTAGCCACCGACTGTGAGCAGTATCTGAATGAACGGCTGACGCAATTGGAAACGCAGCTCGCCACCG
TCAACAGCATGGCGCAGGCTAACGAATTACCGGATGCCATCATCACGGCCTCTGGCCTAAAGATAACGCCGCTGGATGCAGTAGTACCAGATACCGCGCA
GCGCCTTATCGATCAGGCTGCTAGGATCCTGCCGCACGTCAAGATCACTGAGTTACTGCTTGAAGTGGACGAATGGACGGGCTTTACCAGGCACTTCGCA
CACCTGAAATCTGGTGTTCTGGCCAAGGACAAGAACCTGCTACTGACGACTATCCTTGCCGATGCGATCAATCTGGGTCTGACCAAGATGGCAGAATCGT
GTCCAGGAACGACTTATGCCAAGCTCGCTTGGCTGCAAGCCTGGCATATCCGTGACGAAACCTATGGCGCGGCCTTGTCCGAGCTGGTCAATGCGCAGTA
CCGGCATCCGTTTGCCGAACATTGGGGCGATGGTTCTACATCCTCCTCTGACGGCCAGAATTTTCGCACCGGCAACAAGGCGGAGAGTACGGGGCACATC
AATCCGAAATATGGCAGTAGTCCAGGACGGACCTTTTACACGCATATTTCCGACCAGTACGCACCATTTCATACTAAGGTGGTCAATGTCGGTGTGCGCG
ACTCAACCTACGTGCTCGACGGCCTGCTCTACCATGAATCTGACTTACGGATCGAAGAGCACTACACCGACACGGCTGGCTTCACCGATCACGTTTTCGC
GTTGATGCACCTGTTGGGGTTTCGCTTCGCACCGCGTATCCGCGACTTGGGTGAGACCAAGCTCTACATTCCAAAGCGCGATGTCACCTACGAGGGATTG
AAATCAATGATTGGCGGGACGCTCAACATCAAGCTAATCCGTACACATTGGGACGAGATCTTGCGGCTGGCTACCTCGATAAAACAGGGAACGGTGACGG
CCTCACTCATGCTGAGGAAGCTTGGCAGCTACCCACGTCAGAATGGCTTGGCGGTCGCCTTGCGCGAATTGGGGCGTATCGAGCGCACGCTGTTCATTCT
GGATTGGCTGCAAAGTGTCGAGCTCCGCCGCCGGGTACATGCCGGACTGAATAAGGGGGAGGCTCGTAACGCCTTGGCTCGTGCCGTGTTTTTCAATCGA
CTGGGGGAGATCCGTGACCGCAGTTTTGAGCAACAGCGTTACCGGGCAAGTGGCCTTAACTTGGTGACTGCCGCCATCGTGCTATGGAACACCGTCTATC
TGGAAAGGGTGGCACATGGGTTACGTGCCAAGGGACATGCCGTCGATGAAGAGTTATTGCAGTACCTATCGCCGCTAGGCTGGGAGCACATCAACCTGAC
AGGGGATTATCTGTGGCGCAGCAGCGCCAAGATAGGTTCAGGTAAATTCAGGCCTCTACGACCTCTATCACCGGCTTAGCGTACGATTTTTTCCGTTTTC
TGAGGCGACCCC
ACATCCTTGGGGGGGACTCCACTGGCTAATAGCTTTTTGGCTGATTCGATCTTGCTGTCGGTCATCTTCGGCTTGCGACCGCCTTTACGACCGAGTTGTC
TGGCAACGTCCAACCCCGCACGGGTTCTTTCGACGATCAAGTCTCGTTCCATCTCTGCGAGGCTTGCCATGACATGAAAAAAGAATCGGCCCGATGGCGT
GCCGGTATCGATAGAATCGGTGAGACTCTTAAACTGGACGTTTTGTTTGTGCAGATCGCTGACCAGCTCTACCAGTTGTTTGACTGACCGGCCCAATCTA
TCCAGCTTCCAAACAACCAATGTATCCCCTTCGCGCAGTATTTCAAGGGCTTTGCTCAAACCAAGCCTGTCAGCCCGAGTACCACTGATTGTATCTTCAA
ACACTTTTTCGCACCCCGCTTTAAGCAAGGCTTCTCGCTGAAGTTCTAGGTGCTGATCTTGTGTTGATACTCTTGCATAACCGATCAGCATAAATCATGA
CCTTCATTTTTATCTACATCATATCTAACCGCTGCCAGCTGCGATAATAATGTTGGCAGCGCCGTTTGTACCGTATCCCAAACCACATCAAGGTTTATAT
CGAAATAACCATGAGCAATGCGATTGCGCATTCCACGCATACTACGCCATGGAACGTCTGAATGGGCAATGACAAACTCAGAATAACCGTCCATCACCTT
AGTTGATGCTTCACCAATTACGATCAGACTCATGATGACAGCCTGTTGGGTACGTTTATCCACTAAAAATTCATCTTTATCCAACCCTTCAACAAAATAA
CACGCATCGGAAGCGGCTTGGTGCATGTGGTCAAGATAATCAGGTAAACGGTTCACCTTCATACAGGTCGTGCCTCCGCGAGTACTTGGGCTCGAAATTT
CGGTGGTAAATCGCCAGGGGTCAGTAGATCAACTTGAAGGCCGAGCAGCGATTCAAGTTCATCTTGTAAACCTCCCAAGTCAAAAAGTGTCGCTCCAGGG
AGGGCATCAACTAATAAGTCCAGATCACTACCATCGAGATCTGTCCCATCGAGCACTGAACCAAAAACACGTGGATTGGTTACGCGAAAACGACTCGCGG
TCTCACGAATAACGCTTCGCTTAAGAGCGAGCACTGCGGATGGTCTCATAATGGCTATTTCCTTATTATCAAAACTCGTTGAAATGATATGCAACTGAGA
ATAATATTTCAAGAATGATTTTTGAGAATCATAACCCCTTGATCTGCTGTTGTGTCCGAGAGCTCTTGTCGTTGCTCTTACAAACCTACGTTTTCAAGAA
GAAGGAAACCGCATGCCTCGCCGCTCAATCCTATCCGCCGCAGAGCGAGACAGCCTGCTGGTGTTACCCGATACCCAAGACGAACTGATCCGCCACTATA
CGTTTAGCGAACCCGATCTATCACTGATACGGCAGCGGCGCGGTGATGCTAACCGCTTGGGGATCGCGGTACAGTTATGCTTGCTGCGCTTCCCAGGCCA
GGGCTTGTTGCCCGACGCTACGGTGCCAATGCCTCTGCTGCAATGGATAGGACAACAGTTACAGCTCGATCCTGTATGTTGGCCGCAGTATGCCGAGCGA
GAGGAGACACGGCGCGAGCACTTGCTCGAACTGCGGGTGTATCTTGGCATGGAACCATTTAGTCAAGTGCACCATCGGCAGGCTGTCCATACCACGACCG
AACTGGCCTTGCAGACTGACAAGGGCATAGTGTTGGCCAACAGCGTAGTCGAGACGCTGCGTCATAAACACATCATTTTGCCAACGTTAGATGTTGTCGA
GCGCGTCTGTGCCGAGGCTCTAACCCGTGCAAACCGGCGTATCTACGACACCTTGACCGAACCACTATCAGGCTCGCACCGCCACCGGCTCGATGATCTG
CTCAAGCTTCGGGACAACAACAAAACGACTACGCTGGCTTGGCTTCGCCTGTCTCCGGTCAAACCCAATTCGCGGCACATGCTTGAGCACATCGAACGAC
TCAAGGTATGGCAGGCGCTTGATCTTCCTATTGGTGTCGATCGTCTGATCCACCAAAACCGATTGCTCAAGATCGCCCGAGAAGGCGGACAGATGACCCC
CGCCGATTTGGCCAAGTTCGAGCCACAACGCCGCTATGCGACTTTGGTTGCGCTAGCCATCGAGGGGATGGCCACTGTTACAGATGAAATTATTGATCTG
CATGACCGCATCATGGGCAAGCTGTTCAATGATGCCAAGAAGCGACATCAGAAACAGTTTCAGGCATCGGGGAAGGCTATCAATGCCAAGGTGCGCCTGT
TCGGCCGTATCGGCCAAGTGTTGATCGACGCTAAGCAAGCGGGTGATGATCCGTTTGCTGCTATCGAGGGCGTCATATCCTGGGAGGCCTTTGCCAAGAG
CGTGACAGAGGCACAATCGCTCGCGCAGCCCGAGGAATTCGATTTCCTGTACCGTCTCGGTGAGAGCTACGCCACACTACGCCGTTACGCACCGACCTTC
CTCACCGCGCTAAAGTTGCGGGCCGCACCGGCTGCCAAAGGTGTATTGGAGGCCATCGAAGTACTGCGCAGCATGAACAACGACAACGCCCGAAAAGTAC
CTGCAGATGCGCCAATTGATTTCATCAAGCCGCGTTGGCAGAAGCTGGTGATAACCGATACCGGCATCGACCGGCGTTACTACGAGCTATGCGCGCTGTC
GGAGATGAGGAACGCATTGCGTTCCGGTGACATCTGGGTACAGGGATCGCGCCAGTTCAAGGACTTCGAGGACTACCTTGTACCACCCGCGAAATTCGTC
AGTCTCAAGCAGACCAATCAATTGCCGCTGGCCGTAGCCACCGACTGTGAGCAGTATCTGAATGAACGGCTGACGCAATTGGAAACGCAGCTCGCCACCG
TCAACAGCATGGCGCAGGCTAACGAATTACCGGATGCCATCATCACGGCCTCTGGCCTAAAGATAACGCCGCTGGATGCAGTAGTACCAGATACCGCGCA
GCGCCTTATCGATCAGGCTGCTAGGATCCTGCCGCACGTCAAGATCACTGAGTTACTGCTTGAAGTGGACGAATGGACGGGCTTTACCAGGCACTTCGCA
CACCTGAAATCTGGTGTTCTGGCCAAGGACAAGAACCTGCTACTGACGACTATCCTTGCCGATGCGATCAATCTGGGTCTGACCAAGATGGCAGAATCGT
GTCCAGGAACGACTTATGCCAAGCTCGCTTGGCTGCAAGCCTGGCATATCCGTGACGAAACCTATGGCGCGGCCTTGTCCGAGCTGGTCAATGCGCAGTA
CCGGCATCCGTTTGCCGAACATTGGGGCGATGGTTCTACATCCTCCTCTGACGGCCAGAATTTTCGCACCGGCAACAAGGCGGAGAGTACGGGGCACATC
AATCCGAAATATGGCAGTAGTCCAGGACGGACCTTTTACACGCATATTTCCGACCAGTACGCACCATTTCATACTAAGGTGGTCAATGTCGGTGTGCGCG
ACTCAACCTACGTGCTCGACGGCCTGCTCTACCATGAATCTGACTTACGGATCGAAGAGCACTACACCGACACGGCTGGCTTCACCGATCACGTTTTCGC
GTTGATGCACCTGTTGGGGTTTCGCTTCGCACCGCGTATCCGCGACTTGGGTGAGACCAAGCTCTACATTCCAAAGCGCGATGTCACCTACGAGGGATTG
AAATCAATGATTGGCGGGACGCTCAACATCAAGCTAATCCGTACACATTGGGACGAGATCTTGCGGCTGGCTACCTCGATAAAACAGGGAACGGTGACGG
CCTCACTCATGCTGAGGAAGCTTGGCAGCTACCCACGTCAGAATGGCTTGGCGGTCGCCTTGCGCGAATTGGGGCGTATCGAGCGCACGCTGTTCATTCT
GGATTGGCTGCAAAGTGTCGAGCTCCGCCGCCGGGTACATGCCGGACTGAATAAGGGGGAGGCTCGTAACGCCTTGGCTCGTGCCGTGTTTTTCAATCGA
CTGGGGGAGATCCGTGACCGCAGTTTTGAGCAACAGCGTTACCGGGCAAGTGGCCTTAACTTGGTGACTGCCGCCATCGTGCTATGGAACACCGTCTATC
TGGAAAGGGTGGCACATGGGTTACGTGCCAAGGGACATGCCGTCGATGAAGAGTTATTGCAGTACCTATCGCCGCTAGGCTGGGAGCACATCAACCTGAC
AGGGGATTATCTGTGGCGCAGCAGCGCCAAGATAGGTTCAGGTAAATTCAGGCCTCTACGACCTCTATCACCGGCTTAGCGTACGATTTTTTCCGTTTTC
TGAGGCGACCCC
Protein section
ORF number : 4
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
557 bp | 185 aa | 590 | 34 | - | No |
Annotation : DNA-invertaseDescription :
ORF sequence :
MLIGYARVSTQDQHLELQREALLKAGCEKVFEDTISGTRADRLGLSKALEILREGDTLVVWKLDRLGRSVKQLVELVSDLHKQNVQFKSLTDSIDTGTPS
GRFFFHVMASLAEMERDLIVERTRAGLDVARQLGRKGGRKPKMTDSKIESAKKLLASGVPPKDVAKNLGVSVPTLYRWLPASAHA
GRFFFHVMASLAEMERDLIVERTRAGLDVARQLGRKGGRKPKMTDSKIESAKKLLASGVPPKDVAKNLGVSVPTLYRWLPASAHA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
378 bp | 125 aa | 962 | 585 | - | No |
Annotation : hypothetical proteinDescription :
ORF sequence :
MKVNRLPDYLDHMHQAASDACYFVEGLDKDEFLVDKRTQQAVIMSLIVIGEASTKVMDGYSEFVIAHSDVPWRSMRGMRNRIAHGYFDINLDVVWDTVQT
ALPTLLSQLAAVRYDVDKNEGHDLC
ALPTLLSQLAAVRYDVDKNEGHDLC
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
291 bp | 96 aa | 1249 | 959 | - | No |
Annotation : nucleotidyltransferase domain-containing proteinDescription :
ORF sequence :
MRPSAVLALKRSVIRETASRFRVTNPRVFGSVLDGTDLDGSDLDLLVDALPGATLFDLGGLQDELESLLGLQVDLLTPGDLPPKFRAQVLAEARPV
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2967 bp | 988 aa | 1413 | 4379 | + | No |
Chemistry : DDE
ORF sequence :
MPRRSILSAAERDSLLVLPDTQDELIRHYTFSEPDLSLIRQRRGDANRLGIAVQLCLLRFPGQGLLPDATVPMPLLQWIGQQLQLDPVCWPQYAEREETR
REHLLELRVYLGMEPFSQVHHRQAVHTTTELALQTDKGIVLANSVVETLRHKHIILPTLDVVERVCAEALTRANRRIYDTLTEPLSGSHRHRLDDLLKLR
DNNKTTTLAWLRLSPVKPNSRHMLEHIERLKVWQALDLPIGVDRLIHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALAIEGMATVTDEIIDLHDRI
MGKLFNDAKKRHQKQFQASGKAINAKVRLFGRIGQVLIDAKQAGDDPFAAIEGVISWEAFAKSVTEAQSLAQPEEFDFLYRLGESYATLRRYAPTFLTAL
KLRAAPAAKGVLEAIEVLRSMNNDNARKVPADAPIDFIKPRWQKLVITDTGIDRRYYELCALSEMRNALRSGDIWVQGSRQFKDFEDYLVPPAKFVSLKQ
TNQLPLAVATDCEQYLNERLTQLETQLATVNSMAQANELPDAIITASGLKITPLDAVVPDTAQRLIDQAARILPHVKITELLLEVDEWTGFTRHFAHLKS
GVLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHIRDETYGAALSELVNAQYRHPFAEHWGDGSTSSSDGQNFRTGNKAESTGHINPKY
GSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYIPKRDVTYEGLKSMI
GGTLNIKLIRTHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEI
RDRSFEQQRYRASGLNLVTAAIVLWNTVYLERVAHGLRAKGHAVDEELLQYLSPLGWEHINLTGDYLWRSSAKIGSGKFRPLRPLSPA
REHLLELRVYLGMEPFSQVHHRQAVHTTTELALQTDKGIVLANSVVETLRHKHIILPTLDVVERVCAEALTRANRRIYDTLTEPLSGSHRHRLDDLLKLR
DNNKTTTLAWLRLSPVKPNSRHMLEHIERLKVWQALDLPIGVDRLIHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALAIEGMATVTDEIIDLHDRI
MGKLFNDAKKRHQKQFQASGKAINAKVRLFGRIGQVLIDAKQAGDDPFAAIEGVISWEAFAKSVTEAQSLAQPEEFDFLYRLGESYATLRRYAPTFLTAL
KLRAAPAAKGVLEAIEVLRSMNNDNARKVPADAPIDFIKPRWQKLVITDTGIDRRYYELCALSEMRNALRSGDIWVQGSRQFKDFEDYLVPPAKFVSLKQ
TNQLPLAVATDCEQYLNERLTQLETQLATVNSMAQANELPDAIITASGLKITPLDAVVPDTAQRLIDQAARILPHVKITELLLEVDEWTGFTRHFAHLKS
GVLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHIRDETYGAALSELVNAQYRHPFAEHWGDGSTSSSDGQNFRTGNKAESTGHINPKY
GSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYIPKRDVTYEGLKSMI
GGTLNIKLIRTHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEI
RDRSFEQQRYRASGLNLVTAAIVLWNTVYLERVAHGLRAKGHAVDEELLQYLSPLGWEHINLTGDYLWRSSAKIGSGKFRPLRPLSPA
Blast result :
Comments
There are two copies of this transposon on the plasmid of this strain. The transposase is the ORF4, 48% aa similar to ISXc5.
The others ORF :
ORF1 : DNA-invertase
ORF2 : conserved hypothetical protein
ORF3 : nucleotidyltransferase domain protein
The others ORF :
ORF1 : DNA-invertase
ORF2 : conserved hypothetical protein
ORF3 : nucleotidyltransferase domain protein
References
1] Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W., Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R., Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S., DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R., Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J., Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T., Smith,H., Venter,J., Nealson,K. and Fraser,C. (2002) Nat. Biotechnol. 20 (11), 1118-1123