ISRme13
- Family IS3
- Group IS3
Isoform Synonym(s) ISRme3
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007971 | ND | Ralstonia metallidurans | Ralstonia metallidurans |
DNA section
IS Length : 1288 bp
Ends
IR Length : 27/40
IRL : TGAGCTTGCCCCCGCAAAACGAATCCCTTGCTGAGGTTAAACTGAAGCAA
IRR : TGACCTTGCCCCTGTTCCACGAATCCCATAACCGAGGGAATTAGGCAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTAATTACTT | CGC | AATCTGACCG | 3 |
DNA sequence
TGAGCTTGCCCCCGCAAAACGAATCCCTTGCTGAGGTTAAACTGAAGCAAGGAGAGATGTGATGACAAGCAAGACAAAGCGGGCGCAGTACACGCTGGAA
TTCAAGCTGGAAGCGGTACGGCTGGTGAAGAGCGGGCAGAGCATGGCAGTGGTTAGCGCGACCCTGGGCATCAGAGCGCAGACGCTGCATAACTGGGTCA
AGGCGGAGCGGGAAGGCAAGCTGACTGGTGCGGGTATGAAGCCGGTCAGCCCGGAGCAGATGGAGCTGGCCCGGCTTCGGGCGGAGGTGGCGCGCTTGAA
GATGGAGCGCGATATTTTAAAAAAAGCCGCAGCATACTTTGCGAAGGAGTCGGTGTGAGGTATGCGTTCATCGAGCGAAACCGACGTTACTGGCCGGTCT
CGGTCCTGTGTGAGCTGTTAGGGGTCAGCCCCAGCGGCTATCACCAGCGCAAGCAACGCACAGTAAGCACCGACAGGCCAGATAGAGGCCGACTCAGTGA
CGATGCCTTGTTGGCCCACATCAAGGCGATTCACGCCGGGGTCAAGGGGGAGTACGGCTGGCCGCGCATGTGGAAGGAACTGCTGGCGCGTGGGGTGCGG
GTGGGCAAGGAGCGTGTTCGCAAGCTGATGGCGCTGCACGGCATCCGTGCCCGCCACAAGCGCAAGTACATCGCGACAACCAACTCGAACCACGATTTGC
CGGTGGCCCCCAATCTGCTGCAACGCGACTTTAGCCCAGCAGCACCCAATCAAGTCTGGACGAGCGACATAACCTATGTGGCGACCGCCGAAGGCTGGCT
CTACCTGGTGGTCATCATCGACCTGTTCAGCCGGCAGGTGGTTGGCTGGTCGATGCAACCACACATGAAGGCCGAATTGGTCACGGACGCGCTGCGCATG
GCCTGGTTCCGGCGCCGCCCGGAAGCCGGTGTGATTGTGCACACCGACCGGGGAAGCCAGTATTGCAGCCATCTGTTTCAAGACGCCCTGAAGGCGTATG
GCATGCGCTCGTCAATGAGCCGCAGGGGCGATTGCTGGGACAACGCGCCGACTGAGAGTCTGTGGGGGTCGTTGAAGGTCGCTCGCCTGCACGGTCGCCA
GTTCGCTACCCGCCGCGCCGCAATGGACGAGGTAATTGACTGGCTTGGCTTTTATAATGCCAGCCGACTCCACTCGACGCTGGGCTACGTCAGCCCCATG
ACGTTCGAGAAAAACTGGTCCGCAGCTCAGCAACACCGGGCTGCCTAATTCCCTCGGTTATGGGATTCGTGGAACAGGGGCAAGGTCA
TTCAAGCTGGAAGCGGTACGGCTGGTGAAGAGCGGGCAGAGCATGGCAGTGGTTAGCGCGACCCTGGGCATCAGAGCGCAGACGCTGCATAACTGGGTCA
AGGCGGAGCGGGAAGGCAAGCTGACTGGTGCGGGTATGAAGCCGGTCAGCCCGGAGCAGATGGAGCTGGCCCGGCTTCGGGCGGAGGTGGCGCGCTTGAA
GATGGAGCGCGATATTTTAAAAAAAGCCGCAGCATACTTTGCGAAGGAGTCGGTGTGAGGTATGCGTTCATCGAGCGAAACCGACGTTACTGGCCGGTCT
CGGTCCTGTGTGAGCTGTTAGGGGTCAGCCCCAGCGGCTATCACCAGCGCAAGCAACGCACAGTAAGCACCGACAGGCCAGATAGAGGCCGACTCAGTGA
CGATGCCTTGTTGGCCCACATCAAGGCGATTCACGCCGGGGTCAAGGGGGAGTACGGCTGGCCGCGCATGTGGAAGGAACTGCTGGCGCGTGGGGTGCGG
GTGGGCAAGGAGCGTGTTCGCAAGCTGATGGCGCTGCACGGCATCCGTGCCCGCCACAAGCGCAAGTACATCGCGACAACCAACTCGAACCACGATTTGC
CGGTGGCCCCCAATCTGCTGCAACGCGACTTTAGCCCAGCAGCACCCAATCAAGTCTGGACGAGCGACATAACCTATGTGGCGACCGCCGAAGGCTGGCT
CTACCTGGTGGTCATCATCGACCTGTTCAGCCGGCAGGTGGTTGGCTGGTCGATGCAACCACACATGAAGGCCGAATTGGTCACGGACGCGCTGCGCATG
GCCTGGTTCCGGCGCCGCCCGGAAGCCGGTGTGATTGTGCACACCGACCGGGGAAGCCAGTATTGCAGCCATCTGTTTCAAGACGCCCTGAAGGCGTATG
GCATGCGCTCGTCAATGAGCCGCAGGGGCGATTGCTGGGACAACGCGCCGACTGAGAGTCTGTGGGGGTCGTTGAAGGTCGCTCGCCTGCACGGTCGCCA
GTTCGCTACCCGCCGCGCCGCAATGGACGAGGTAATTGACTGGCTTGGCTTTTATAATGCCAGCCGACTCCACTCGACGCTGGGCTACGTCAGCCCCATG
ACGTTCGAGAAAAACTGGTCCGCAGCTCAGCAACACCGGGCTGCCTAATTCCCTCGGTTATGGGATTCGTGGAACAGGGGCAAGGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
297 bp | 98 aa | 62 | 358 | + | No |
Description : First part of the transposase
ORF sequence :
MTSKTKRAQYTLEFKLEAVRLVKSGQSMAVVSATLGIRAQTLHNWVKAEREGKLTGAGMKPVSPEQMELARLRAEVARLKMERDILKKAAAYFAKESV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1056 bp | 351 aa | 193 | 1248 | + | No |
Description : Second part of the transposase
ORF sequence :
LGQGGAGRQADWCGYEAGQPGADGAGPASGGGGALEDGARYFKKSRSILCEGVGVRYAFIERNRRYWPVSVLCELLGVSPSGYHQRKQRTVSTDRPDRGR
LSDDALLAHIKAIHAGVKGEYGWPRMWKELLARGVRVGKERVRKLMALHGIRARHKRKYIATTNSNHDLPVAPNLLQRDFSPAAPNQVWTSDITYVATAE
GWLYLVVIIDLFSRQVVGWSMQPHMKAELVTDALRMAWFRRRPEAGVIVHTDRGSQYCSHLFQDALKAYGMRSSMSRRGDCWDNAPTESLWGSLKVARLH
GRQFATRRAAMDEVIDWLGFYNASRLHSTLGYVSPMTFEKNWSAAQQHRAA
LSDDALLAHIKAIHAGVKGEYGWPRMWKELLARGVRVGKERVRKLMALHGIRARHKRKYIATTNSNHDLPVAPNLLQRDFSPAAPNQVWTSDITYVATAE
GWLYLVVIIDLFSRQVVGWSMQPHMKAELVTDALRMAWFRRRPEAGVIVHTDRGSQYCSHLFQDALKAYGMRSSMSRRGDCWDNAPTESLWGSLKVARLH
GRQFATRRAAMDEVIDWLGFYNASRLHSTLGYVSPMTFEKNWSAAQQHRAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1187 bp | 395 aa | 62 | 1248 | + | Yes |
Chemistry : DDE
ORF sequence :
MTSKTKRAQYTLEFKLEAVRLVKSGQSMAVVSATLGIRAQTLHNWVKAEREGKLTGAGMKPVSPEQMELARLRAEVARLKMERDILKKSRSILCEGVGVR
YAFIERNRRYWPVSVLCELLGVSPSGYHQRKQRTVSTDRPDRGRLSDDALLAHIKAIHAGVKGEYGWPRMWKELLARGVRVGKERVRKLMALHGIRARHK
RKYIATTNSNHDLPVAPNLLQRDFSPAAPNQVWTSDITYVATAEGWLYLVVIIDLFSRQVVGWSMQPHMKAELVTDALRMAWFRRRPEAGVIVHTDRGSQ
YCSHLFQDALKAYGMRSSMSRRGDCWDNAPTESLWGSLKVARLHGRQFATRRAAMDEVIDWLGFYNASRLHSTLGYVSPMTFEKNWSAAQQHRAA
YAFIERNRRYWPVSVLCELLGVSPSGYHQRKQRTVSTDRPDRGRLSDDALLAHIKAIHAGVKGEYGWPRMWKELLARGVRVGKERVRKLMALHGIRARHK
RKYIATTNSNHDLPVAPNLLQRDFSPAAPNQVWTSDITYVATAEGWLYLVVIIDLFSRQVVGWSMQPHMKAELVTDALRMAWFRRRPEAGVIVHTDRGSQ
YCSHLFQDALKAYGMRSSMSRRGDCWDNAPTESLWGSLKVARLHGRQFATRRAAMDEVIDWLGFYNASRLHSTLGYVSPMTFEKNWSAAQQHRAA
Blast result :
Comments
ISRme13 is 84 % (ORFA) aa similar to ISPsy28 and 85% (ORFB) aa similar to ISBxe1. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M., Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A., Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S., Taghavi,S., van der Lelie,D. and Richardson,P. (2006) Direct submission GenBank.