ISBvi4
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAEH02000006 | ND | Burkholderia vietnamiensis | Burkholderia vietnamiensis G4 |
DNA section
IS Length : 1268 bp
Ends
IR Length : 25/34
IRL : TGAGGCCGGTCGGAAAAAATGGAAGCCAACGTTTCGTAAAATCGAGAAAC
IRR : TGAGGTCGGACGGAATTCGTGGAGGCCAACGGGTTAAGCAGCGATCTGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGCGAAGC | GACCTTGAGC | 0 |
DNA sequence
TGAGGCCGGTCGGAAAAAATGGAAGCCAACGTTTCGTAAAATCGAGAAACGGAGGCATGGATGAATCGAATTCCAAGAGCGGTCTATACGAAGGAGCTTC
GCGACGAAGCGGTCAAGTTGGCGTTGGCCGAAGGTGTGGGGGTATCGGAAGCTTCCCGGCGCTTGTCGATCCCAATCAAGACGCTGGCAAACTGGGTGCG
CGCGGCGAAGGCCGGTAAGCTGAAAGATGTCGGCCGGCACCAGAGGCCACTGACGGAAATGGAGGCCGAGCTGGCGCAGGTCAAGCGCGAACTGGCCGAG
GTCAAAATGGAGCGCGATCTGCTAAAAAAGTTCGCGACGTACTTCGCGAAGGAGTCGCGGTGAAGTACGGCGTGATCGAACAAATGCGACAGGACTATCC
CGTGCCGCCGATGTGCCGCGTGCTGGGTGTATCGGTGAGCGGCTACTATGCGTGGCGCAAGCGCGGGCCGTCCGAAAGAACGCAGCAGGAGCCTCGCCTG
GAAGCGGAGGTACTTGCGGCACATCAGCGAACTCGGGAAAGCTTCGGGCCCGAGCGCCTGAAGCAACATCTCGATGAACGTGGCGTGCGAATCGGCGTGC
ACCGGATCAGGCGACTGCGTAGAAAACTGGGACTGCGCTGCAAGCAGAAACGCCGGTTCAAGGCCACGACGAATTCGAAGCACGACCTGCCTGTCGCGCC
GAATCTGTTGAACCAGGATTTCTCAGTGACCGCGCCCAATCAGGCCTGGTGCGGTGACATCACCTATATCGCGACCGACGAGGGCTGGCTGTATCTTGCC
GGCCTGAAGGACCTGTACAGCGGCGAAATCGTCGGCTATGCGATGAGCGAACGTATGACGAAAAATCTGGTCATGCAGGCACTGTTTCGCGCTGTCGCAA
CCCGACGACCGCCGGCGGGCCTGATTCATCATAGCGACCGTGGGTCGCAATATTGTGCGCTGGCTTATCAAGCACTCATCGGCCAGTTTGACATGCGCGC
GTCGATGAGCCGCCGTGGCAACTGCTACGACAACGCGCCCATCGAATCCTTCTGGGGAACGCTGAAGAATGAACTGGTCTATCATCAACGCTTCGCCACG
CGCGAGCAGGCGCGCCTGGCGATCAGCGAATACATCGAAATCTTCTACAACCGGCAGCGCACGCAGGCGCGTCTGAACTACCAATCGCCTGTCGCGTTCA
CGCAGCGCTTCTATTTGAATCAGATCGCTGCTTAACCCGTTGGCCTCCACGAATTCCGTCCGACCTCA
GCGACGAAGCGGTCAAGTTGGCGTTGGCCGAAGGTGTGGGGGTATCGGAAGCTTCCCGGCGCTTGTCGATCCCAATCAAGACGCTGGCAAACTGGGTGCG
CGCGGCGAAGGCCGGTAAGCTGAAAGATGTCGGCCGGCACCAGAGGCCACTGACGGAAATGGAGGCCGAGCTGGCGCAGGTCAAGCGCGAACTGGCCGAG
GTCAAAATGGAGCGCGATCTGCTAAAAAAGTTCGCGACGTACTTCGCGAAGGAGTCGCGGTGAAGTACGGCGTGATCGAACAAATGCGACAGGACTATCC
CGTGCCGCCGATGTGCCGCGTGCTGGGTGTATCGGTGAGCGGCTACTATGCGTGGCGCAAGCGCGGGCCGTCCGAAAGAACGCAGCAGGAGCCTCGCCTG
GAAGCGGAGGTACTTGCGGCACATCAGCGAACTCGGGAAAGCTTCGGGCCCGAGCGCCTGAAGCAACATCTCGATGAACGTGGCGTGCGAATCGGCGTGC
ACCGGATCAGGCGACTGCGTAGAAAACTGGGACTGCGCTGCAAGCAGAAACGCCGGTTCAAGGCCACGACGAATTCGAAGCACGACCTGCCTGTCGCGCC
GAATCTGTTGAACCAGGATTTCTCAGTGACCGCGCCCAATCAGGCCTGGTGCGGTGACATCACCTATATCGCGACCGACGAGGGCTGGCTGTATCTTGCC
GGCCTGAAGGACCTGTACAGCGGCGAAATCGTCGGCTATGCGATGAGCGAACGTATGACGAAAAATCTGGTCATGCAGGCACTGTTTCGCGCTGTCGCAA
CCCGACGACCGCCGGCGGGCCTGATTCATCATAGCGACCGTGGGTCGCAATATTGTGCGCTGGCTTATCAAGCACTCATCGGCCAGTTTGACATGCGCGC
GTCGATGAGCCGCCGTGGCAACTGCTACGACAACGCGCCCATCGAATCCTTCTGGGGAACGCTGAAGAATGAACTGGTCTATCATCAACGCTTCGCCACG
CGCGAGCAGGCGCGCCTGGCGATCAGCGAATACATCGAAATCTTCTACAACCGGCAGCGCACGCAGGCGCGTCTGAACTACCAATCGCCTGTCGCGTTCA
CGCAGCGCTTCTATTTGAATCAGATCGCTGCTTAACCCGTTGGCCTCCACGAATTCCGTCCGACCTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 61 | 363 | + | No |
Description : First part of the transposase
ORF sequence :
MNRIPRAVYTKELRDEAVKLALAEGVGVSEASRRLSIPIKTLANWVRAAKAGKLKDVGRHQRPLTEMEAELAQVKRELAEVKMERDLLKKFATYFAKESR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 219 | 1235 | + | No |
Description : Second part of the transposase
ORF sequence :
AERCRPAPEATDGNGGRAGAGQARTGRGQNGARSAKKVRDVLREGVAVKYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLA
AHQRTRESFGPERLKQHLDERGVRIGVHRIRRLRRKLGLRCKQKRRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLY
SGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQRFATREQARL
AISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA
AHQRTRESFGPERLKQHLDERGVRIGVHRIRRLRRKLGLRCKQKRRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLY
SGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQRFATREQARL
AISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1175 bp | 391 aa | 61 | 1235 | + | Yes |
Chemistry : DDE
ORF sequence :
MNRIPRAVYTKELRDEAVKLALAEGVGVSEASRRLSIPIKTLANWVRAAKAGKLKDVGRHQRPLTEMEAELAQVKRELAEVKMERDLLKKVRDVLREGVA
VKYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRESFGPERLKQHLDERGVRIGVHRIRRLRRKLGLRCKQKRRF
KATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHSDRGSQYCA
LAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA
VKYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRESFGPERLKQHLDERGVRIGVHRIRRLRRKLGLRCKQKRRF
KATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHSDRGSQYCA
LAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA
Blast result :
Comments
Genome in progress.
ISBvi4 is 65 % (ORFA) aa similar to ISGlo1 and 75% (ORFB) aa similar to ISSd1. The third ORF is a putative ORFAB transposase reconstructed in sillico by possible -1 frameshift.
ISBvi4 is 65 % (ORFA) aa similar to ISGlo1 and 75% (ORFB) aa similar to ISSd1. The third ORF is a putative ORFAB transposase reconstructed in sillico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.