ISBvi4

  • Family IS3
  • Group IS3
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAEH02000006 ND Burkholderia vietnamiensis
Burkholderia vietnamiensis G4
DNA section
IS Length : 1268 bp

Ends


IR Length : 25/34

IRL : TGAGGCCGGTCGGAAAAAATGGAAGCCAACGTTTCGTAAAATCGAGAAAC
IRR : TGAGGTCGGACGGAATTCGTGGAGGCCAACGGGTTAAGCAGCGATCTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
AACGCGAAGCGACCTTGAGC0

DNA sequence

TGAGGCCGGTCGGAAAAAATGGAAGCCAACGTTTCGTAAAATCGAGAAACGGAGGCATGGATGAATCGAATTCCAAGAGCGGTCTATACGAAGGAGCTTC
GCGACGAAGCGGTCAAGTTGGCGTTGGCCGAAGGTGTGGGGGTATCGGAAGCTTCCCGGCGCTTGTCGATCCCAATCAAGACGCTGGCAAACTGGGTGCG
CGCGGCGAAGGCCGGTAAGCTGAAAGATGTCGGCCGGCACCAGAGGCCACTGACGGAAATGGAGGCCGAGCTGGCGCAGGTCAAGCGCGAACTGGCCGAG
GTCAAAATGGAGCGCGATCTGCTAAAAAAGTTCGCGACGTACTTCGCGAAGGAGTCGCGGTGAAGTACGGCGTGATCGAACAAATGCGACAGGACTATCC
CGTGCCGCCGATGTGCCGCGTGCTGGGTGTATCGGTGAGCGGCTACTATGCGTGGCGCAAGCGCGGGCCGTCCGAAAGAACGCAGCAGGAGCCTCGCCTG
GAAGCGGAGGTACTTGCGGCACATCAGCGAACTCGGGAAAGCTTCGGGCCCGAGCGCCTGAAGCAACATCTCGATGAACGTGGCGTGCGAATCGGCGTGC
ACCGGATCAGGCGACTGCGTAGAAAACTGGGACTGCGCTGCAAGCAGAAACGCCGGTTCAAGGCCACGACGAATTCGAAGCACGACCTGCCTGTCGCGCC
GAATCTGTTGAACCAGGATTTCTCAGTGACCGCGCCCAATCAGGCCTGGTGCGGTGACATCACCTATATCGCGACCGACGAGGGCTGGCTGTATCTTGCC
GGCCTGAAGGACCTGTACAGCGGCGAAATCGTCGGCTATGCGATGAGCGAACGTATGACGAAAAATCTGGTCATGCAGGCACTGTTTCGCGCTGTCGCAA
CCCGACGACCGCCGGCGGGCCTGATTCATCATAGCGACCGTGGGTCGCAATATTGTGCGCTGGCTTATCAAGCACTCATCGGCCAGTTTGACATGCGCGC
GTCGATGAGCCGCCGTGGCAACTGCTACGACAACGCGCCCATCGAATCCTTCTGGGGAACGCTGAAGAATGAACTGGTCTATCATCAACGCTTCGCCACG
CGCGAGCAGGCGCGCCTGGCGATCAGCGAATACATCGAAATCTTCTACAACCGGCAGCGCACGCAGGCGCGTCTGAACTACCAATCGCCTGTCGCGTTCA
CGCAGCGCTTCTATTTGAATCAGATCGCTGCTTAACCCGTTGGCCTCCACGAATTCCGTCCGACCTCA
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
303 bp100 aa61363+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MNRIPRAVYTKELRDEAVKLALAEGVGVSEASRRLSIPIKTLANWVRAAKAGKLKDVGRHQRPLTEMEAELAQVKRELAEVKMERDLLKKFATYFAKESR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1017 bp338 aa2191235+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

AERCRPAPEATDGNGGRAGAGQARTGRGQNGARSAKKVRDVLREGVAVKYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLA
AHQRTRESFGPERLKQHLDERGVRIGVHRIRRLRRKLGLRCKQKRRFKATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLY
SGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHSDRGSQYCALAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQRFATREQARL
AISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1175 bp391 aa611235+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNRIPRAVYTKELRDEAVKLALAEGVGVSEASRRLSIPIKTLANWVRAAKAGKLKDVGRHQRPLTEMEAELAQVKRELAEVKMERDLLKKVRDVLREGVA
VKYGVIEQMRQDYPVPPMCRVLGVSVSGYYAWRKRGPSERTQQEPRLEAEVLAAHQRTRESFGPERLKQHLDERGVRIGVHRIRRLRRKLGLRCKQKRRF
KATTNSKHDLPVAPNLLNQDFSVTAPNQAWCGDITYIATDEGWLYLAGLKDLYSGEIVGYAMSERMTKNLVMQALFRAVATRRPPAGLIHHSDRGSQYCA
LAYQALIGQFDMRASMSRRGNCYDNAPIESFWGTLKNELVYHQRFATREQARLAISEYIEIFYNRQRTQARLNYQSPVAFTQRFYLNQIAA

 

Blast result :
Comments
Genome in progress.
ISBvi4 is 65 % (ORFA) aa similar to ISGlo1 and 75% (ORFB) aa similar to ISSd1. The third ORF is a putative ORFAB transposase reconstructed in sillico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank.