ISFsp9
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Frankia sp. | Frankia sp. EAN1pec |
DNA section
IS Length : 1559 bp
Ends
IR Length : 23/28
IRL : TACTACAGCCCCAGTGGTCGCCGTGTGGTCTCTCGTCGCGGATACGGCGT
IRR : TACTACAGCCCCAGTGATCTCTATGTAGCTGCCGCCGGTGTGGCGGTTAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTCGAAGGG | CTAG | TCCGACGGGA | 4 |
DNA sequence
TACTACAGCCCCAGTGGTCGCCGTGTGGTCTCTCGTCGCGGATACGGCGTGGCGTGTGGCGTGGGGCGGCCACCGCGTGATTCTCCGTAGTCTGTGAGAA
CAAAAGAAGAAGCCGCGGTGGCCGCGGCACGTAGCGTATCCGGGATGAACGTGGCGGTGTGGGAGGCGGGGCTGGAGGAGCTGTTCGGCCGGGTGGCGGA
CTGTTTCCGGTCTGATCAGCCGCGTGCGCAGGCACGGGCCTATGTGGCAGGGTTGTTGTCTCGGACGGAACGGAAGAACGGGTGGACGCTTGCGGAGTTC
ACCCGTGAGGCCGGGCCGCAGAAGATGCAGCGGTTGTTGAACGAGTATGCCTGGGACGCCCACGCGATGCGTGACGTCGTCCAGTCGTATGTGGTGGAGA
ACCTGACCGAGCCGGATGGGGTCCTGGTTGTGGACGAGACCGGGTTTATCAAGAAGGGAAAGTCCTCGGCCGGGGTGCAGCGGCAGTATAGCGGTACCGC
GGGCCGGATTGAGAACTGTCAGATCGGGGTGTTCGCCGCCTATGTTTCCGGGAAGGGACGGGCTTTCGTCGACCGGGAGCTGTACCTTCCCGCGAGTTGG
ACCGACGACCGGGCGCGGTGCAAGGCGGCGGGTGTGCCGGCCAGGGTGGGGTTCGCGACCAAGCCGCTGCTGGCACTGGACATGATCCGCCGGTTCTGGG
TGACCCACCGGCAGTTGGGCTGGGTCGCCGGCGATGAGGTGTACGGCGGCGACCCCGAACTACGCGACTGGCTGGAAGAACACCGGGTCGGCTATGTTCT
GGCTGTCAAGAAGGACACCGAGGTGACCACGACCGTCGGTCGCCGCCGTGTGGACACCCTCGCCGCGAAGGTCCCCGCGCGTGCCTGGGAGACATATTCC
TGCGCCGATGGCTCGAAAGGACCCCGGTTGTATGACTGGGCGCTGGTGGACACGACCGACCTCGCCGGCCCGGCGAATCGGCCTCAGCAGGTCCTGATCC
GCCGCGCACGCACCGGCAAAAGGGAGCTTGCGTTCTTTCTCACCCACAGTCCGCGGCCGGTTCCGCTCGCTACCCTCGTCACCGTCGCAGGCCGGCGCTG
GGGAATCGAGGAATGTTTCCAGTCAGCCAAGAACGAGGTCGGTCTCGACCATTACCAGGTTCGGCTCTACCGCGCCTGGTACCGGCACATCACCCTGGCG
ATGCTCGCCCACGCCTGGCTCGCTGTCACCGCGCTGAGAAACCGCGAACAAAACCCACCGGCCGTCCCACCAGCGACGACCGCGGTGGGATACCAGCGCC
TTCCCGGCGGCCTCCCGATCGCCGAGCAGCCGGAACCGGATAGAGCCATGATGGCCCCACTCACCCTCAACGAGATCCGTCACGTCATTGCCCTTTTTGG
ACAGGCCGCCATCCCATCGGCCGTGATCACCTGGTGGTCGGACTGGCGTCGCAGCCACCAGGCACGCGCCCGCCATTACCACTTCCAGACCCGGATCCGC
GCCGCTCAAGTAACCGCCACACCGGCGGCAGCTACATAGAGATCACTGGGGCTGTAGTA
CAAAAGAAGAAGCCGCGGTGGCCGCGGCACGTAGCGTATCCGGGATGAACGTGGCGGTGTGGGAGGCGGGGCTGGAGGAGCTGTTCGGCCGGGTGGCGGA
CTGTTTCCGGTCTGATCAGCCGCGTGCGCAGGCACGGGCCTATGTGGCAGGGTTGTTGTCTCGGACGGAACGGAAGAACGGGTGGACGCTTGCGGAGTTC
ACCCGTGAGGCCGGGCCGCAGAAGATGCAGCGGTTGTTGAACGAGTATGCCTGGGACGCCCACGCGATGCGTGACGTCGTCCAGTCGTATGTGGTGGAGA
ACCTGACCGAGCCGGATGGGGTCCTGGTTGTGGACGAGACCGGGTTTATCAAGAAGGGAAAGTCCTCGGCCGGGGTGCAGCGGCAGTATAGCGGTACCGC
GGGCCGGATTGAGAACTGTCAGATCGGGGTGTTCGCCGCCTATGTTTCCGGGAAGGGACGGGCTTTCGTCGACCGGGAGCTGTACCTTCCCGCGAGTTGG
ACCGACGACCGGGCGCGGTGCAAGGCGGCGGGTGTGCCGGCCAGGGTGGGGTTCGCGACCAAGCCGCTGCTGGCACTGGACATGATCCGCCGGTTCTGGG
TGACCCACCGGCAGTTGGGCTGGGTCGCCGGCGATGAGGTGTACGGCGGCGACCCCGAACTACGCGACTGGCTGGAAGAACACCGGGTCGGCTATGTTCT
GGCTGTCAAGAAGGACACCGAGGTGACCACGACCGTCGGTCGCCGCCGTGTGGACACCCTCGCCGCGAAGGTCCCCGCGCGTGCCTGGGAGACATATTCC
TGCGCCGATGGCTCGAAAGGACCCCGGTTGTATGACTGGGCGCTGGTGGACACGACCGACCTCGCCGGCCCGGCGAATCGGCCTCAGCAGGTCCTGATCC
GCCGCGCACGCACCGGCAAAAGGGAGCTTGCGTTCTTTCTCACCCACAGTCCGCGGCCGGTTCCGCTCGCTACCCTCGTCACCGTCGCAGGCCGGCGCTG
GGGAATCGAGGAATGTTTCCAGTCAGCCAAGAACGAGGTCGGTCTCGACCATTACCAGGTTCGGCTCTACCGCGCCTGGTACCGGCACATCACCCTGGCG
ATGCTCGCCCACGCCTGGCTCGCTGTCACCGCGCTGAGAAACCGCGAACAAAACCCACCGGCCGTCCCACCAGCGACGACCGCGGTGGGATACCAGCGCC
TTCCCGGCGGCCTCCCGATCGCCGAGCAGCCGGAACCGGATAGAGCCATGATGGCCCCACTCACCCTCAACGAGATCCGTCACGTCATTGCCCTTTTTGG
ACAGGCCGCCATCCCATCGGCCGTGATCACCTGGTGGTCGGACTGGCGTCGCAGCCACCAGGCACGCGCCCGCCATTACCACTTCCAGACCCGGATCCGC
GCCGCTCAAGTAACCGCCACACCGGCGGCAGCTACATAGAGATCACTGGGGCTGTAGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1386 bp | 462 aa | 151 | 1536 | + | No |
Chemistry : DDE
ORF sequence :
VAVWEAGLEELFGRVADCFRSDQPRAQARAYVAGLLSRTERKNGWTLAEFTREAGPQKMQRLLNEYAWDAHAMRDVVQSYVVENLTEPDGVLVVDETGFI
KKGKSSAGVQRQYSGTAGRIENCQIGVFAAYVSGKGRAFVDRELYLPASWTDDRARCKAAGVPARVGFATKPLLALDMIRRFWVTHRQLGWVAGDEVYGG
DPELRDWLEEHRVGYVLAVKKDTEVTTTVGRRRVDTLAAKVPARAWETYSCADGSKGPRLYDWALVDTTDLAGPANRPQQVLIRRARTGKRELAFFLTHS
PRPVPLATLVTVAGRRWGIEECFQSAKNEVGLDHYQVRLYRAWYRHITLAMLAHAWLAVTALRNREQNPPAVPPATTAVGYQRLPGGLPIAEQPEPDRAM
MAPLTLNEIRHVIALFGQAAIPSAVITWWSDWRRSHQARARHYHFQTRIRAAQVTATPAAAT
KKGKSSAGVQRQYSGTAGRIENCQIGVFAAYVSGKGRAFVDRELYLPASWTDDRARCKAAGVPARVGFATKPLLALDMIRRFWVTHRQLGWVAGDEVYGG
DPELRDWLEEHRVGYVLAVKKDTEVTTTVGRRRVDTLAAKVPARAWETYSCADGSKGPRLYDWALVDTTDLAGPANRPQQVLIRRARTGKRELAFFLTHS
PRPVPLATLVTVAGRRWGIEECFQSAKNEVGLDHYQVRLYRAWYRHITLAMLAHAWLAVTALRNREQNPPAVPPATTAVGYQRLPGGLPIAEQPEPDRAM
MAPLTLNEIRHVIALFGQAAIPSAVITWWSDWRRSHQARARHYHFQTRIRAAQVTATPAAAT
Blast result :
Comments
ISFsp9 is 47% aa similar to ISSav2. ISFsp9 has been found by screening completely sequenced bacterial genomes for sequences homologous to the IS1357 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-99-D(N3)-124-E(C1). The copy number of ISFsp9 in Frankia sp. EAN1pec is unknown since genome sequencing is still in progress.
Genome in progress : current accession number : NZ_AAII00000000.
Genome in progress : current accession number : NZ_AAII00000000.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.Unpublished
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18