ISWosp2
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB036665 | ND | Wolbachia phage | Wolbachia phage WO |
DNA section
IS Length : 1500 bp
Ends
IR Length : 24
IRL : CTTACTATTACCCACAAATATAAATGGACATAAAAATAAAGTATTACAAC
IRR : CTTACTATTACCCACAAATATAAAGTTCGTGAGCAAGTCGCCATCCTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCCGTTTCT | TATTACATT | ACCATTGGCT | 9 |
DNA sequence
CTTACTATTACCCACAAATATAAATGGACATAAAAATAAAGTATTACAACATTAAAGTTTGCAAACATTGAGGGTAAAAAATGGCAAACAGGAATAATGA
ATGGGCTGAAAATGAATTTGGAGATGCTGTACTTGGAGATAAAAGGTTAACTGACCGATTAGTAAATATTGCTGATAGTTTTACAAGTTTACCTGAAAGC
TCAATCAATCAGGCGTGTGGAAGTTGGTCAGAAGCAAAAGCAGCATATCGTTTTTTTCAAAATGAGAACGTGAAAGAAGGCGATATTCTAGCTTCACACG
TTGCTAAAACAGTTGAAAGAACAAAAGCCCATAAAAAAATTTTTGTGATCCAAGATACAAGTTATATTTCATACACAGACCATGAAAAAACAAGTGGATT
GGGAGTTATTACAAGAAAACATAGTCAAGGTATTATAATGCATACAGCTCTAGCTGTTAGTATAGAAGGTTTGGTACTAGGGATACTAGATCAAAAAATT
TATTCAAGACCTGAAGAATCTGAAAACATAAAAAAAAAGAACAATGACAGTATCCGCATTGAAGATAAAGAGAGTATAAAATGGTTAGAAACTTTAAGCA
ACACAAACAACATTATTGATTCAACTCAAACTGAGACTATAACTATATGCGATAGAGAAGCAGATATATATGAGTTTTTTGAGCTTGCACATAATCTTAA
TTCGGCAGTGTTAGTTAGAGCTTCCAAAGATAGGGCAGTAAATAGAAAATCTCGATATCCTGAAAAAGGTGAGCAGAAGTTATGGGAATTTATTAAATCC
TCTCATTGTGCAGGTACGGTAAAAGTTGAAGTTCCTGCAAAAGATAATAAGCCAAAAAGAACAGCACATTTGGAAGTTAGATTCGGAAAGTTTATTATGC
ATCCATCTAAGAATAGTATTAGGCATAAGACAGAAGAATTACTTAAATTACCACACTATGCAGTTTACGTTGTTGAAAAAGACTTTCCTTCTGAAACAAG
TCCGCTAGAGTGGATGCTTTTAACAAATCTTCCAGTCAATACCTTTGATGAAGCTGTTGAAAAAGTTAGGTGGTATTGTCTTAGATGGAAAATAGAAATA
TTACATAAAATTTTAAAATCTGGTCTCAAAGTTGAAGAATGTAGGCTTGGAACAGCAGAAAGGTTGATGCGATATTTAACAGTAATGAGTATTATTGCTT
GGAGAATTTTCTTTATTACAACAATCGCAAGAATTGATCCAACATTACCGTGTACTACCTTATTAGCCGAAGAAGAATGGAAAGTTCTATATGTAAAAAT
ACATAGAAAACCATGTTCAAATGCAACTCCTACTATAAAAGAAGCTGTTTCATGGATTGCTCAACTTGGAGGACATTTGGCTAGAAAAAATGATCTAGAA
CCAGGCCCCATTACTATTTGGAAAGGATGGAGACGTCTCTTTGATCTAGCAGAAGGATGGCGACTTGCTCACGAACTTTATATTTGTGGGTAATAGTAAG
ATGGGCTGAAAATGAATTTGGAGATGCTGTACTTGGAGATAAAAGGTTAACTGACCGATTAGTAAATATTGCTGATAGTTTTACAAGTTTACCTGAAAGC
TCAATCAATCAGGCGTGTGGAAGTTGGTCAGAAGCAAAAGCAGCATATCGTTTTTTTCAAAATGAGAACGTGAAAGAAGGCGATATTCTAGCTTCACACG
TTGCTAAAACAGTTGAAAGAACAAAAGCCCATAAAAAAATTTTTGTGATCCAAGATACAAGTTATATTTCATACACAGACCATGAAAAAACAAGTGGATT
GGGAGTTATTACAAGAAAACATAGTCAAGGTATTATAATGCATACAGCTCTAGCTGTTAGTATAGAAGGTTTGGTACTAGGGATACTAGATCAAAAAATT
TATTCAAGACCTGAAGAATCTGAAAACATAAAAAAAAAGAACAATGACAGTATCCGCATTGAAGATAAAGAGAGTATAAAATGGTTAGAAACTTTAAGCA
ACACAAACAACATTATTGATTCAACTCAAACTGAGACTATAACTATATGCGATAGAGAAGCAGATATATATGAGTTTTTTGAGCTTGCACATAATCTTAA
TTCGGCAGTGTTAGTTAGAGCTTCCAAAGATAGGGCAGTAAATAGAAAATCTCGATATCCTGAAAAAGGTGAGCAGAAGTTATGGGAATTTATTAAATCC
TCTCATTGTGCAGGTACGGTAAAAGTTGAAGTTCCTGCAAAAGATAATAAGCCAAAAAGAACAGCACATTTGGAAGTTAGATTCGGAAAGTTTATTATGC
ATCCATCTAAGAATAGTATTAGGCATAAGACAGAAGAATTACTTAAATTACCACACTATGCAGTTTACGTTGTTGAAAAAGACTTTCCTTCTGAAACAAG
TCCGCTAGAGTGGATGCTTTTAACAAATCTTCCAGTCAATACCTTTGATGAAGCTGTTGAAAAAGTTAGGTGGTATTGTCTTAGATGGAAAATAGAAATA
TTACATAAAATTTTAAAATCTGGTCTCAAAGTTGAAGAATGTAGGCTTGGAACAGCAGAAAGGTTGATGCGATATTTAACAGTAATGAGTATTATTGCTT
GGAGAATTTTCTTTATTACAACAATCGCAAGAATTGATCCAACATTACCGTGTACTACCTTATTAGCCGAAGAAGAATGGAAAGTTCTATATGTAAAAAT
ACATAGAAAACCATGTTCAAATGCAACTCCTACTATAAAAGAAGCTGTTTCATGGATTGCTCAACTTGGAGGACATTTGGCTAGAAAAAATGATCTAGAA
CCAGGCCCCATTACTATTTGGAAAGGATGGAGACGTCTCTTTGATCTAGCAGAAGGATGGCGACTTGCTCACGAACTTTATATTTGTGGGTAATAGTAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1410 bp | 470 aa | 81 | 1490 | + | No |
Chemistry : DDE
ORF sequence :
MANRNNEWAENEFGDAVLGDKRLTDRLVNIADSFTSLPESSINQACGSWSEAKAAYRFFQNENVKEGDILASHVAKTVERTKAHKKIFVIQDTSYISYTD
HEKTSGLGVITRKHSQGIIMHTALAVSIEGLVLGILDQKIYSRPEESENIKKKNNDSIRIEDKESIKWLETLSNTNNIIDSTQTETITICDREADIYEFF
ELAHNLNSAVLVRASKDRAVNRKSRYPEKGEQKLWEFIKSSHCAGTVKVEVPAKDNKPKRTAHLEVRFGKFIMHPSKNSIRHKTEELLKLPHYAVYVVEK
DFPSETSPLEWMLLTNLPVNTFDEAVEKVRWYCLRWKIEILHKILKSGLKVEECRLGTAERLMRYLTVMSIIAWRIFFITTIARIDPTLPCTTLLAEEEW
KVLYVKIHRKPCSNATPTIKEAVSWIAQLGGHLARKNDLEPGPITIWKGWRRLFDLAEGWRLAHELYICG
HEKTSGLGVITRKHSQGIIMHTALAVSIEGLVLGILDQKIYSRPEESENIKKKNNDSIRIEDKESIKWLETLSNTNNIIDSTQTETITICDREADIYEFF
ELAHNLNSAVLVRASKDRAVNRKSRYPEKGEQKLWEFIKSSHCAGTVKVEVPAKDNKPKRTAHLEVRFGKFIMHPSKNSIRHKTEELLKLPHYAVYVVEK
DFPSETSPLEWMLLTNLPVNTFDEAVEKVRWYCLRWKIEILHKILKSGLKVEECRLGTAERLMRYLTVMSIIAWRIFFITTIARIDPTLPCTTLLAEEEW
KVLYVKIHRKPCSNATPTIKEAVSWIAQLGGHLARKNDLEPGPITIWKGWRRLFDLAEGWRLAHELYICG
Blast result :
Comments
ISWosp2 is 56% aa similar to ISLpn5. ISWosp2 has been found by screening completely sequenced bacterial genomes for sequences homologous to the IS50 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-98-D(N3)-147-E(C1).
References
1] Masui,S., Kamoda,S., Sasaki,T. and Ishikawa,H. (2000) J. Mol. Evol. 51 (5), 491-497
2] Reznikoff, W.S., Bordenstein, S.R. and Apodaca, J. (2004) J. Bact. 186(24), 8240-8247
3] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Reznikoff, W.S., Bordenstein, S.R. and Apodaca, J. (2004) J. Bact. 186(24), 8240-8247
3] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18