ISLsa1
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936503 | ND | Lactobacillus sakei | Lactobacillus sakei 23K |
DNA section
IS Length : 1035 bp
Ends
IR Length : 22/27
IRL : TGGCAAATTCTATAATTAATCCGAACAGAAATTAAAAAGCCCAAAGCAAT
IRR : TGGCAAATTACAAGTTTAATCCGAACAAGCCCGGAATCTTTCAATGGCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCGTTTTTATACTTTTAA | TC | TCCAAAAAAATC | 2 |
DNA sequence
TGGCAAATTCTATAATTAATCCGAACAGAAATTAAAAAGCCCAAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTT
TGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGT
CGCCAAAGCTACGATTAGCTATGAGTTGGACCGAGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGGTCGT
CGTTCGATGCTGACGGCAGCATTAGCGACTTTAATTACCAATCACTTACGATTAACCTGGTCACCAGAAACCATTGCGGCCGCTTATAACTTGAGCACTG
CGTCAATTTATAATTGGCTTAATCGTGGCTGGCTCCCCTTCAAATTGACTGATCTACCCAATCGGAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGG
GAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA
AGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAATAGAACGGCTAAGGCTCTAAACACCG
CCTTTGGCAAGTTTATGGGGGCCTTCGGTCCCCAAGTAAAATCCATTACTGTTGATCATGGTAAAGAGTTTGCCAATTATCAGGCCTTAGAACAGGATTA
TCAGATCAAAGTTTATTTTTGCCATCCATATTCACCATGGGAGCGAGGTTCCAATGAATATTTTAATAGACGGTTACGCTGGTTCTTCCCGAAAAAGACC
AATTTTAGCCAAGTAACGACTGATGAGATCCTAGCAGCACTTGAACTAATTAATCAACGACCATTAAAAATACATCATCAACAGACTGCCATTGAAAGAT
TCCGGGCTTGTTCGGATTAAACTTGTAATTTGCCA
TGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGT
CGCCAAAGCTACGATTAGCTATGAGTTGGACCGAGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGGTCGT
CGTTCGATGCTGACGGCAGCATTAGCGACTTTAATTACCAATCACTTACGATTAACCTGGTCACCAGAAACCATTGCGGCCGCTTATAACTTGAGCACTG
CGTCAATTTATAATTGGCTTAATCGTGGCTGGCTCCCCTTCAAATTGACTGATCTACCCAATCGGAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGG
GAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA
AGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAATAGAACGGCTAAGGCTCTAAACACCG
CCTTTGGCAAGTTTATGGGGGCCTTCGGTCCCCAAGTAAAATCCATTACTGTTGATCATGGTAAAGAGTTTGCCAATTATCAGGCCTTAGAACAGGATTA
TCAGATCAAAGTTTATTTTTGCCATCCATATTCACCATGGGAGCGAGGTTCCAATGAATATTTTAATAGACGGTTACGCTGGTTCTTCCCGAAAAAGACC
AATTTTAGCCAAGTAACGACTGATGAGATCCTAGCAGCACTTGAACTAATTAATCAACGACCATTAAAAATACATCATCAACAGACTGCCATTGAAAGAT
TCCGGGCTTGTTCGGATTAAACTTGTAATTTGCCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 100 | 1020 | + | No |
Chemistry : DDE
ORF sequence :
MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLST
ASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNT
AFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIER
FRACSD
ASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNT
AFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIER
FRACSD
Blast result :
Comments
ISLsa1 is 62% aa similar to ISLpl1.
References
1] Chaillou,S., Champomier-Verges,M., Cornet,M., Crutz Lecoq,A.-M., Dudez,A.-M., Martin,V., Beaufils,S., Darbon-Rongere,E., Bossy,R., Loux,V. and Zagorec,M. (2005) Nat. Biotechnol. 23 (12), 1494-1495