ISLsa1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936503 ND Lactobacillus sakei
Lactobacillus sakei 23K
DNA section
IS Length : 1035 bp

Ends


IR Length : 22/27

IRL : TGGCAAATTCTATAATTAATCCGAACAGAAATTAAAAAGCCCAAAGCAAT
IRR : TGGCAAATTACAAGTTTAATCCGAACAAGCCCGGAATCTTTCAATGGCAG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGTTTTTATACTTTTAATCTCCAAAAAAATC2

DNA sequence

TGGCAAATTCTATAATTAATCCGAACAGAAATTAAAAAGCCCAAAGCAATCACTTACAATGGTAGTAGCTAATTCCAACCAATATAGGGAGTGATTACTT
TGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGAATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGT
CGCCAAAGCTACGATTAGCTATGAGTTGGACCGAGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGGTCGT
CGTTCGATGCTGACGGCAGCATTAGCGACTTTAATTACCAATCACTTACGATTAACCTGGTCACCAGAAACCATTGCGGCCGCTTATAACTTGAGCACTG
CGTCAATTTATAATTGGCTTAATCGTGGCTGGCTCCCCTTCAAATTGACTGATCTACCCAATCGGAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGG
GAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA
AGTGAGTCACGATCATGTCTGGTTACATTCGTAGAACGTAAGACCCGACTTCTATGGGCCATCAAAGCCCCTAATAGAACGGCTAAGGCTCTAAACACCG
CCTTTGGCAAGTTTATGGGGGCCTTCGGTCCCCAAGTAAAATCCATTACTGTTGATCATGGTAAAGAGTTTGCCAATTATCAGGCCTTAGAACAGGATTA
TCAGATCAAAGTTTATTTTTGCCATCCATATTCACCATGGGAGCGAGGTTCCAATGAATATTTTAATAGACGGTTACGCTGGTTCTTCCCGAAAAAGACC
AATTTTAGCCAAGTAACGACTGATGAGATCCTAGCAGCACTTGAACTAATTAATCAACGACCATTAAAAATACATCATCAACAGACTGCCATTGAAAGAT
TCCGGGCTTGTTCGGATTAAACTTGTAATTTGCCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
921 bp306 aa1001020+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLST
ASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNT
AFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIER
FRACSD

 

Blast result :
Comments
ISLsa1 is 62% aa similar to ISLpl1.
References
1] Chaillou,S., Champomier-Verges,M., Cornet,M., Crutz Lecoq,A.-M., Dudez,A.-M., Martin,V., Beaufils,S., Darbon-Rongere,E., Bossy,R., Loux,V. and Zagorec,M. (2005) Nat. Biotechnol. 23 (12), 1494-1495