ISLbl1
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AANC01000001 | ND | Leeuwenhoekiella blandensis | Leeuwenhoekiella blandensis MED217 |
DNA section
IS Length : 1435 bp
Ends
IR Length : 14/17
IRL : TGGAATTACTACATTAGACTGGACATAGAGTTGAATGAATATTATTGCAA
IRR : TGGAATTATATCGATTCTGATAGTTTAGTGCTTTACGAAAACGGAACTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTCAAATTC | TTTTATTCCG | 0 |
DNA sequence
TGGAATTACTACATTAGACTGGACATAGAGTTGAATGAATATTATTGCAAGTTGTTAACTTAGCAATCATGAGACGTAAAGCCAAACATTACACTTTAGA
GTTTAAGCAAAAAGCAGTAGAATTAAGTTACGCCAAAGGCAGTGTAGCACAGGTTTGTGAGGACCTGGATATCTTACCTGCTGTTCTTTACCGGTGGCGT
AAAGAGCAAAAGAATTATGGTAAAAATAGTTTTCCCGGCCGTGGTAACCCTAAAATGACCGATCAACAAAAAGAGATAGCCCGTTTAAAGAAACAGCTCA
AAGAAGCCGAATTAGAACGTGATATCTTAAAAAAGGCGATTGGCATCTTCTCCGCGAGCGACAAGAAAAATACAGGTTCATAAAACAGCATCGTATGAAA
TTTCCTGTTGAGAAGATGTGCACTATGTTAGCCGTGAGTAAAAGCGGTTATTACCACTGGTTGAAATCTGGTCCTAGCACCCTTTGGAAAGAAAATCAGA
AGCTCTCTTCATTAATCAAAGATATATTTGAAGATAGTCACCAAAGCTATGGAGCTCCTAGAATAAAGGCTGAATTGAAAGCTTTGGGCTTTAAGGTATC
AAAGCCTCGGGTAGCCCGTATAATGAAGGCAAACTATTTATACGCTAAGAGGAAGCGTAAGTTTAAAGCCACCACCGATAGTAACCATAAATATCCCATA
GCACCAAACTTGTTGAACCAATGCTTTAATGTAGCCAGGGCTAATCAAGTATGGGTAAGCGATATTACCTATGTTCAGACCAATCAGGGTTGGAGTTACC
TAACAGTGATCATTGATCTATTCAATAGAAAAGTTATAGGATGGGCTTTAAGTGATACCCTAAATACTGAGGATACTGTTATAAAAGCTTGGCAGATGGC
TATTAAAAATACCACACTAACACAACCTTTGATATTCCATTCAGACCAAGGTATCCAATATGCCAGCCAAAGATTTACTAATCTACTTAAAAGCTATAAT
GACCTGGTAAAACAATCGATGAGTAGAAAAGGTAATTGCTGGGACAATGCCGTAGCTGAATCCTTTTTTAAATCTCTGAAAGTAGAATGGGTATATTGGC
ATAAATACAAGCTTAAATCACAGGCAGAGTTATCTATCTTTCAGTGGATAGAAACCTGGTACAATACCAGAAGAAGACATTCCTACTTAGGAAACAGAAC
TATTAAAGAATTTGAAATAGATATGTATAATCAAAAACTAGCAGCATAGTCACTCAACTTAAAGTCCAGTTTTTTGTTGCAAGTCCAGTTTTATATTCAG
AATCAGAGTGTCATTTTTAATTTTCCATTCTCCTTTTAATTCCGAATAAATTATTTCGTGATAATGGTAGAATTTAGTCCGATGAAAAGTTCCGTTTTCG
TAAAGCACTAAACTATCAGAATCGATATAATTCCA
GTTTAAGCAAAAAGCAGTAGAATTAAGTTACGCCAAAGGCAGTGTAGCACAGGTTTGTGAGGACCTGGATATCTTACCTGCTGTTCTTTACCGGTGGCGT
AAAGAGCAAAAGAATTATGGTAAAAATAGTTTTCCCGGCCGTGGTAACCCTAAAATGACCGATCAACAAAAAGAGATAGCCCGTTTAAAGAAACAGCTCA
AAGAAGCCGAATTAGAACGTGATATCTTAAAAAAGGCGATTGGCATCTTCTCCGCGAGCGACAAGAAAAATACAGGTTCATAAAACAGCATCGTATGAAA
TTTCCTGTTGAGAAGATGTGCACTATGTTAGCCGTGAGTAAAAGCGGTTATTACCACTGGTTGAAATCTGGTCCTAGCACCCTTTGGAAAGAAAATCAGA
AGCTCTCTTCATTAATCAAAGATATATTTGAAGATAGTCACCAAAGCTATGGAGCTCCTAGAATAAAGGCTGAATTGAAAGCTTTGGGCTTTAAGGTATC
AAAGCCTCGGGTAGCCCGTATAATGAAGGCAAACTATTTATACGCTAAGAGGAAGCGTAAGTTTAAAGCCACCACCGATAGTAACCATAAATATCCCATA
GCACCAAACTTGTTGAACCAATGCTTTAATGTAGCCAGGGCTAATCAAGTATGGGTAAGCGATATTACCTATGTTCAGACCAATCAGGGTTGGAGTTACC
TAACAGTGATCATTGATCTATTCAATAGAAAAGTTATAGGATGGGCTTTAAGTGATACCCTAAATACTGAGGATACTGTTATAAAAGCTTGGCAGATGGC
TATTAAAAATACCACACTAACACAACCTTTGATATTCCATTCAGACCAAGGTATCCAATATGCCAGCCAAAGATTTACTAATCTACTTAAAAGCTATAAT
GACCTGGTAAAACAATCGATGAGTAGAAAAGGTAATTGCTGGGACAATGCCGTAGCTGAATCCTTTTTTAAATCTCTGAAAGTAGAATGGGTATATTGGC
ATAAATACAAGCTTAAATCACAGGCAGAGTTATCTATCTTTCAGTGGATAGAAACCTGGTACAATACCAGAAGAAGACATTCCTACTTAGGAAACAGAAC
TATTAAAGAATTTGAAATAGATATGTATAATCAAAAACTAGCAGCATAGTCACTCAACTTAAAGTCCAGTTTTTTGTTGCAAGTCCAGTTTTATATTCAG
AATCAGAGTGTCATTTTTAATTTTCCATTCTCCTTTTAATTCCGAATAAATTATTTCGTGATAATGGTAGAATTTAGTCCGATGAAAAGTTCCGTTTTCG
TAAAGCACTAAACTATCAGAATCGATATAATTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
315 bp | 104 aa | 69 | 383 | + | No |
Description : First part of the transposase
ORF sequence :
MRRKAKHYTLEFKQKAVELSYAKGSVAQVCEDLDILPAVLYRWRKEQKNYGKNSFPGRGNPKMTDQQKEIARLKKQLKEAELERDILKKAIGIFSASDKK
NTGS
NTGS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
927 bp | 308 aa | 323 | 1249 | + | No |
Description : Second part of the transposase
ORF sequence :
YLKKGDWHLLRERQEKYRFIKQHRMKFPVEKMCTMLAVSKSGYYHWLKSGPSTLWKENQKLSSLIKDIFEDSHQSYGAPRIKAELKALGFKVSKPRVARI
MKANYLYAKRKRKFKATTDSNHKYPIAPNLLNQCFNVARANQVWVSDITYVQTNQGWSYLTVIIDLFNRKVIGWALSDTLNTEDTVIKAWQMAIKNTTLT
QPLIFHSDQGIQYASQRFTNLLKSYNDLVKQSMSRKGNCWDNAVAESFFKSLKVEWVYWHKYKLKSQAELSIFQWIETWYNTRRRHSYLGNRTIKEFEID
MYNQKLAA
MKANYLYAKRKRKFKATTDSNHKYPIAPNLLNQCFNVARANQVWVSDITYVQTNQGWSYLTVIIDLFNRKVIGWALSDTLNTEDTVIKAWQMAIKNTTLT
QPLIFHSDQGIQYASQRFTNLLKSYNDLVKQSMSRKGNCWDNAVAESFFKSLKVEWVYWHKYKLKSQAELSIFQWIETWYNTRRRHSYLGNRTIKEFEID
MYNQKLAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1181 bp | 393 aa | 69 | 1249 | + | Yes |
Chemistry : DDE
ORF sequence :
MQVVNLAIMRRKAKHYTLEFKQKAVELSYAKGSVAQVCEDLDILPAVLYRWRKEQKNYGKNSFPGRGNPKMTDQQKEIARLKKQLKEAELERDILKKGDW
HLLRERQEKYRFIKQHRMKFPVEKMCTMLAVSKSGYYHWLKSGPSTLWKENQKLSSLIKDIFEDSHQSYGAPRIKAELKALGFKVSKPRVARIMKANYLY
AKRKRKFKATTDSNHKYPIAPNLLNQCFNVARANQVWVSDITYVQTNQGWSYLTVIIDLFNRKVIGWALSDTLNTEDTVIKAWQMAIKNTTLTQPLIFHS
DQGIQYASQRFTNLLKSYNDLVKQSMSRKGNCWDNAVAESFFKSLKVEWVYWHKYKLKSQAELSIFQWIETWYNTRRRHSYLGNRTIKEFEIDMYNQKLA
A
HLLRERQEKYRFIKQHRMKFPVEKMCTMLAVSKSGYYHWLKSGPSTLWKENQKLSSLIKDIFEDSHQSYGAPRIKAELKALGFKVSKPRVARIMKANYLY
AKRKRKFKATTDSNHKYPIAPNLLNQCFNVARANQVWVSDITYVQTNQGWSYLTVIIDLFNRKVIGWALSDTLNTEDTVIKAWQMAIKNTTLTQPLIFHS
DQGIQYASQRFTNLLKSYNDLVKQSMSRKGNCWDNAVAESFFKSLKVEWVYWHKYKLKSQAELSIFQWIETWYNTRRRHSYLGNRTIKEFEIDMYNQKLA
A
Blast result :
Comments
Genome in progress.
ISLbl1 is 62% (ORFA) and 68% (ORFB) aa similar to ISCce3. The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
ISLbl1 is 62% (ORFA) and 68% (ORFB) aa similar to ISCce3. The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
References
1] Pinhassi,J., Pedros-Alio,C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.