ISVei1
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008786 | ND | Verminephrobacter eiseniae | Verminephrobacter eiseniae EF01-2 |
DNA section
IS Length : 1214 bp
Ends
IR Length : 21/42
IRL : TGACCACTGAAGTTTGAATGATCTGAAAGATATAAGGAGGCAGTGCGACT
IRR : TGACCTTGCCCCTGGAATCCGTACCCCATAGCGGAGTCACGAATTGGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATCACGCCT | ATGAGCCTGA | 0 |
DNA sequence
TGACCACTGAAGTTTGAATGATCTGAAAGATATAAGGAGGCAGTGCGACTGGTCCATGGCGGCCAGAGCATCGCAGCGGCGGCCAGGACGCTGGGCGTGG
TGGAACAGACGCTGTTCAACTGGGTCAAGGCGGATCGCCTGGGCAAGCTCACAGGCGCTGACAGCAAGGCAGTGAGCGTCGAGCAGATGGAGATCAGCCG
GCTGCGCGCGGAGCTGGCACGCGTGAAGATGGAGCGTGACATCCTGGGAAAAGCGACGGCGTACTTCGCGAAGGCGCACACCTGAAGTACGCCTTCATTC
ACCGCAACCGCCAGGCGTGGCCGATCTCGGTGCAGTGCCGAGTCCTGCAGGCCAGCATCACCGGCTACCACGAACACTTCGTTCGTAGAGCCAGCGCGGC
CCAGCGGCACCATCTCAGCGACGACGCGCTGCTGGTGCACATCGAGGTGATCCACGCCGAAACGCGGGGCGGCTACGGCTGGCCGCGCACGTGGAAGGAA
CTGCTGGCCAGGGGCATCCGGGTGGGCAAGGAGCGGGTGCGCAAGCTCATGCAACTGCACGGCATCCGGGCCAAGGGCAAGCGCCGCTTGAAGGTCACCA
CGGACAGCAAGCATGACCTGCCGATCGCCCCCAATCTGCTGGATCGGCAGTTCGATGTGGCCGAACCCGACAAGGTCTGGGTGGGCGACATCACCTACAT
CGCAACCGACGAAGGCTGGCTGTTGCTGGCCGTGGTGATCGACCTGTTCAGCCGCCAGGTGGTGGGCTGGTCACTGCGCCAGGACATGACGCGCGACATC
GTCATCGATGCTGTGCGCATGGCCTGGTTCAAGCGCCATCCGCGCAAGCATGCCGGGCTGATCTTGCACAGCGACCGGGGCAGCCAATACGCCAGCGAGG
ACTTCAGGGACGTGCTCGCCCAGTGCGGCATCACGGCCTCGATGAGCCGCAAGGGCAACTGCTGGGACAACGCCTGCAGCGAGACCCTGTTCGGTTCGTT
GAAGGTGGAGCGACTGCATGGGCAGCGCTTCGTGACGCGGCGCCAGGCCAAGGACGAGGTCATCGCCTGGGTACTCTGGTACAACCGCACCCGGCTGCAC
TCCACGCTGGCGTACGTCAGCCCGGTGCGGTTCGAGCAAGACTGGTATGCGGCTCAGGCCAAGCAAGCCAATTCGTGACTCCGCTATGGGGTACGGATTC
CAGGGGCAAGGTCA
TGGAACAGACGCTGTTCAACTGGGTCAAGGCGGATCGCCTGGGCAAGCTCACAGGCGCTGACAGCAAGGCAGTGAGCGTCGAGCAGATGGAGATCAGCCG
GCTGCGCGCGGAGCTGGCACGCGTGAAGATGGAGCGTGACATCCTGGGAAAAGCGACGGCGTACTTCGCGAAGGCGCACACCTGAAGTACGCCTTCATTC
ACCGCAACCGCCAGGCGTGGCCGATCTCGGTGCAGTGCCGAGTCCTGCAGGCCAGCATCACCGGCTACCACGAACACTTCGTTCGTAGAGCCAGCGCGGC
CCAGCGGCACCATCTCAGCGACGACGCGCTGCTGGTGCACATCGAGGTGATCCACGCCGAAACGCGGGGCGGCTACGGCTGGCCGCGCACGTGGAAGGAA
CTGCTGGCCAGGGGCATCCGGGTGGGCAAGGAGCGGGTGCGCAAGCTCATGCAACTGCACGGCATCCGGGCCAAGGGCAAGCGCCGCTTGAAGGTCACCA
CGGACAGCAAGCATGACCTGCCGATCGCCCCCAATCTGCTGGATCGGCAGTTCGATGTGGCCGAACCCGACAAGGTCTGGGTGGGCGACATCACCTACAT
CGCAACCGACGAAGGCTGGCTGTTGCTGGCCGTGGTGATCGACCTGTTCAGCCGCCAGGTGGTGGGCTGGTCACTGCGCCAGGACATGACGCGCGACATC
GTCATCGATGCTGTGCGCATGGCCTGGTTCAAGCGCCATCCGCGCAAGCATGCCGGGCTGATCTTGCACAGCGACCGGGGCAGCCAATACGCCAGCGAGG
ACTTCAGGGACGTGCTCGCCCAGTGCGGCATCACGGCCTCGATGAGCCGCAAGGGCAACTGCTGGGACAACGCCTGCAGCGAGACCCTGTTCGGTTCGTT
GAAGGTGGAGCGACTGCATGGGCAGCGCTTCGTGACGCGGCGCCAGGCCAAGGACGAGGTCATCGCCTGGGTACTCTGGTACAACCGCACCCGGCTGCAC
TCCACGCTGGCGTACGTCAGCCCGGTGCGGTTCGAGCAAGACTGGTATGCGGCTCAGGCCAAGCAAGCCAATTCGTGACTCCGCTATGGGGTACGGATTC
CAGGGGCAAGGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
243 bp | 80 aa | 43 | 285 | + | No |
Description : First part of the transposase
ORF sequence :
MRLVHGGQSIAAAARTLGVVEQTLFNWVKADRLGKLTGADSKAVSVEQMEISRLRAELARVKMERDILGKATAYFAKAHT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 240 | 1178 | + | No |
Description : Second part of the transposase
ORF sequence :
HPGKSDGVLREGAHLKYAFIHRNRQAWPISVQCRVLQASITGYHEHFVRRASAAQRHHLSDDALLVHIEVIHAETRGGYGWPRTWKELLARGIRVGKERV
RKLMQLHGIRAKGKRRLKVTTDSKHDLPIAPNLLDRQFDVAEPDKVWVGDITYIATDEGWLLLAVVIDLFSRQVVGWSLRQDMTRDIVIDAVRMAWFKRH
PRKHAGLILHSDRGSQYASEDFRDVLAQCGITASMSRKGNCWDNACSETLFGSLKVERLHGQRFVTRRQAKDEVIAWVLWYNRTRLHSTLAYVSPVRFEQ
DWYAAQAKQANS
RKLMQLHGIRAKGKRRLKVTTDSKHDLPIAPNLLDRQFDVAEPDKVWVGDITYIATDEGWLLLAVVIDLFSRQVVGWSLRQDMTRDIVIDAVRMAWFKRH
PRKHAGLILHSDRGSQYASEDFRDVLAQCGITASMSRKGNCWDNACSETLFGSLKVERLHGQRFVTRRQAKDEVIAWVLWYNRTRLHSTLAYVSPVRFEQ
DWYAAQAKQANS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1136 bp | 378 aa | 43 | 1178 | + | Yes |
Chemistry : DDE
ORF sequence :
MRLVHGGQSIAAAARTLGVVEQTLFNWVKADRLGKLTGADSKAVSVEQMEISRLRAELARVKMERDILGKSDGVLREGAHLKYAFIHRNRQAWPISVQCR
VLQASITGYHEHFVRRASAAQRHHLSDDALLVHIEVIHAETRGGYGWPRTWKELLARGIRVGKERVRKLMQLHGIRAKGKRRLKVTTDSKHDLPIAPNLL
DRQFDVAEPDKVWVGDITYIATDEGWLLLAVVIDLFSRQVVGWSLRQDMTRDIVIDAVRMAWFKRHPRKHAGLILHSDRGSQYASEDFRDVLAQCGITAS
MSRKGNCWDNACSETLFGSLKVERLHGQRFVTRRQAKDEVIAWVLWYNRTRLHSTLAYVSPVRFEQDWYAAQAKQANS
VLQASITGYHEHFVRRASAAQRHHLSDDALLVHIEVIHAETRGGYGWPRTWKELLARGIRVGKERVRKLMQLHGIRAKGKRRLKVTTDSKHDLPIAPNLL
DRQFDVAEPDKVWVGDITYIATDEGWLLLAVVIDLFSRQVVGWSLRQDMTRDIVIDAVRMAWFKRHPRKHAGLILHSDRGSQYASEDFRDVLAQCGITAS
MSRKGNCWDNACSETLFGSLKVERLHGQRFVTRRQAKDEVIAWVLWYNRTRLHSTLAYVSPVRFEQDWYAAQAKQANS
Blast result :
Comments
ISVei1 is 81% (ORFA) and 77% (ORFB) aa similar to ISBxe1. The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. (2007) Direct submission GenBank.