ISSpo4
- Family IS5
- Group IS903
Isoform Synonym(s) ISSpo5
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003911 | ND | Silicibacter pomeroyi | Silicibacter pomeroyi DSS-3 Ruegeria pomeroyi DSS-3 |
DNA section
IS Length : 1092 bp
Ends
IR Length : 16/18
IRL : GGCGTTGTTGCAGAACTCTGCCACTGTAGGATTCACATCGCGAAACCATG
IRR : GGCATTGTTGTAGAACTCACGCCTGAGGCGTGGCCGCCCCTTACCCTACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGACTCTTGGATCGATAC | GTTCGGAGGGCGAAGCGAAT | 0 |
DNA sequence
GGCGTTGTTGCAGAACTCTGCCACTGTAGGATTCACATCGCGAAACCATGTGGTTAGACGGTCTGCATGAGCAAGCCATCACCCGGCCGCTACCGCACGA
CCAACTGGTCGAGTTACACTGCCACGCTCAGAAATCGCGGGTCGCTGTTGATCTGGTTGGACAAGGACATGACCTGGTTCGCGCCGCATGAGGGACGACC
GGGGCGACCGCCGGTCTTTTCGAACGCGGCGATCCAGTTCTGCATGTCGATCAAGGTGCTGTTCAAGCTGCCGCTCCGGCAGACGACTGGGATGGTGGCC
AGCTTGCTCAAGATGGCGGGTCTGGATTGGGAGGTGCCTGACTACACGACGCTTTGCCGACGGCAAAAGACGTTGGCCGTCCAAATCCCGTATCGGCGCG
CCGATGGGCCGCTCAACTTGCTCGTAGACAGCACCGGGATCAAGCTCCTCGGTGACGGTGAATGGCAGGCCCGCAAGCACGGTGTTCAGGGCCGCCGTCA
ATCACTGCCCGGCAGTTGATTGCAAAGCAATCAATGAGAGGGGCGCAAGGTCCATCTGGCGATGGATACCGCTACCTCCGACATCCGGGCGGTGGAGTTT
ACTCCCAGCCGAGACGGCGACAGCCCGGTCCTGCCAGACCTGCTGGAGCAAATCCCCGGGGGCGAAAATATCGGCACCGTGACGGCCGATGGTGCCTACG
ACACAAGACGTTGTCATACAGCGATCCTCGCGCGCGAGGCGGTCCCGATCATCCCGATCCGCAAGAATGGTCGGTCGTGGAGGGAAGACTGCCCAGCCGC
GATTGCCAGAAACGAAACTCTGCGGGCTACCCGGTACTATGGCCGAGCCTTCTGGAAGCGATGGACAGGATACCACGTCCGCAGCCGCATCGAAGCGAAG
ATACGCTGCCTCAAGGCCTTCGGCGAACGCATCGCTGCCCGCGACCCCGAGCGCCAGACCGCCGAAATCCACGTCCGCATCGCACTCATGAACCGCTTCA
ACGCACTCGGCACCGCCGAGATCGTCCGCGTGGCAGGACCTCAGTAGGGTAAGGGGCGGCCACGCCTCAGGCGTGAGTTCTACAACAATGCC
CCAACTGGTCGAGTTACACTGCCACGCTCAGAAATCGCGGGTCGCTGTTGATCTGGTTGGACAAGGACATGACCTGGTTCGCGCCGCATGAGGGACGACC
GGGGCGACCGCCGGTCTTTTCGAACGCGGCGATCCAGTTCTGCATGTCGATCAAGGTGCTGTTCAAGCTGCCGCTCCGGCAGACGACTGGGATGGTGGCC
AGCTTGCTCAAGATGGCGGGTCTGGATTGGGAGGTGCCTGACTACACGACGCTTTGCCGACGGCAAAAGACGTTGGCCGTCCAAATCCCGTATCGGCGCG
CCGATGGGCCGCTCAACTTGCTCGTAGACAGCACCGGGATCAAGCTCCTCGGTGACGGTGAATGGCAGGCCCGCAAGCACGGTGTTCAGGGCCGCCGTCA
ATCACTGCCCGGCAGTTGATTGCAAAGCAATCAATGAGAGGGGCGCAAGGTCCATCTGGCGATGGATACCGCTACCTCCGACATCCGGGCGGTGGAGTTT
ACTCCCAGCCGAGACGGCGACAGCCCGGTCCTGCCAGACCTGCTGGAGCAAATCCCCGGGGGCGAAAATATCGGCACCGTGACGGCCGATGGTGCCTACG
ACACAAGACGTTGTCATACAGCGATCCTCGCGCGCGAGGCGGTCCCGATCATCCCGATCCGCAAGAATGGTCGGTCGTGGAGGGAAGACTGCCCAGCCGC
GATTGCCAGAAACGAAACTCTGCGGGCTACCCGGTACTATGGCCGAGCCTTCTGGAAGCGATGGACAGGATACCACGTCCGCAGCCGCATCGAAGCGAAG
ATACGCTGCCTCAAGGCCTTCGGCGAACGCATCGCTGCCCGCGACCCCGAGCGCCAGACCGCCGAAATCCACGTCCGCATCGCACTCATGAACCGCTTCA
ACGCACTCGGCACCGCCGAGATCGTCCGCGTGGCAGGACCTCAGTAGGGTAAGGGGCGGCCACGCCTCAGGCGTGAGTTCTACAACAATGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 67 | 1047 | + | No |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
There are 2 copies of ISSpo4 in Silicibacter pomeroyi DSS-3. There are 2 stop codon in the sequence of ISSpo4.
ISSpo4 is 89% aa similar to ISPpa4(by BlastX).
ISSpo4 is 89% aa similar to ISPpa4(by BlastX).
References
1] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913