ISSpo4

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s) ISSpo5
Accession numberTranspositionOriginHost
NC_003911 ND Silicibacter pomeroyi
Silicibacter pomeroyi DSS-3
Ruegeria pomeroyi DSS-3
DNA section
IS Length : 1092 bp

Ends


IR Length : 16/18

IRL : GGCGTTGTTGCAGAACTCTGCCACTGTAGGATTCACATCGCGAAACCATG
IRR : GGCATTGTTGTAGAACTCACGCCTGAGGCGTGGCCGCCCCTTACCCTACT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTGACTCTTGGATCGATACGTTCGGAGGGCGAAGCGAAT0

DNA sequence

GGCGTTGTTGCAGAACTCTGCCACTGTAGGATTCACATCGCGAAACCATGTGGTTAGACGGTCTGCATGAGCAAGCCATCACCCGGCCGCTACCGCACGA
CCAACTGGTCGAGTTACACTGCCACGCTCAGAAATCGCGGGTCGCTGTTGATCTGGTTGGACAAGGACATGACCTGGTTCGCGCCGCATGAGGGACGACC
GGGGCGACCGCCGGTCTTTTCGAACGCGGCGATCCAGTTCTGCATGTCGATCAAGGTGCTGTTCAAGCTGCCGCTCCGGCAGACGACTGGGATGGTGGCC
AGCTTGCTCAAGATGGCGGGTCTGGATTGGGAGGTGCCTGACTACACGACGCTTTGCCGACGGCAAAAGACGTTGGCCGTCCAAATCCCGTATCGGCGCG
CCGATGGGCCGCTCAACTTGCTCGTAGACAGCACCGGGATCAAGCTCCTCGGTGACGGTGAATGGCAGGCCCGCAAGCACGGTGTTCAGGGCCGCCGTCA
ATCACTGCCCGGCAGTTGATTGCAAAGCAATCAATGAGAGGGGCGCAAGGTCCATCTGGCGATGGATACCGCTACCTCCGACATCCGGGCGGTGGAGTTT
ACTCCCAGCCGAGACGGCGACAGCCCGGTCCTGCCAGACCTGCTGGAGCAAATCCCCGGGGGCGAAAATATCGGCACCGTGACGGCCGATGGTGCCTACG
ACACAAGACGTTGTCATACAGCGATCCTCGCGCGCGAGGCGGTCCCGATCATCCCGATCCGCAAGAATGGTCGGTCGTGGAGGGAAGACTGCCCAGCCGC
GATTGCCAGAAACGAAACTCTGCGGGCTACCCGGTACTATGGCCGAGCCTTCTGGAAGCGATGGACAGGATACCACGTCCGCAGCCGCATCGAAGCGAAG
ATACGCTGCCTCAAGGCCTTCGGCGAACGCATCGCTGCCCGCGACCCCGAGCGCCAGACCGCCGAAATCCACGTCCGCATCGCACTCATGAACCGCTTCA
ACGCACTCGGCACCGCCGAGATCGTCCGCGTGGCAGGACCTCAGTAGGGTAAGGGGCGGCCACGCCTCAGGCGTGAGTTCTACAACAATGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa671047+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
There are 2 copies of ISSpo4 in Silicibacter pomeroyi DSS-3. There are 2 stop codon in the sequence of ISSpo4.
ISSpo4 is 89% aa similar to ISPpa4(by BlastX).
References
1] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913