ISFjo2
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAPM01000004 | ND | Flavobacterium johnsoniae | Flavobacterium johnsoniae UW101 Flavobacterium johnsoniae ATCC 17061 |
DNA section
IS Length : 1567 bp
Ends
IR Length : 27/36
IRL : TGTACCCTATAGAATAGACAATTAAAAAAAGCCTATTCTATGGGGTATTT
IRR : TGTACCCTTTGTCAAGGACAGTTTAAAAAAGGCTATGCAACATTAAGAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTATCATCT | CCAATTTTTT | 0 |
DNA sequence
TGTACCCTATAGAATAGACAATTAAAAAAAGCCTATTCTATGGGGTATTTTTATGTATAATTAAATAAATGATTATTAGGAGATGTTAAAATGAGCAAAA
AATTATTTACAAGTGAAGAAATAAAAATATTATCTCAAAATAAATATGTAAAAAAAGTAAGCAGCAAAGGAATTACATATAATGATGAATTTAAAAGATT
ATTTATAGTAGAAAGTAAAAATGGCAAGTTACCAAGACAAATATTTGAAGAGAATGGTTTTGATATAGAAATTTTAGGTATGCACCGTGTTCATTCTGCT
AGTAAAAGATGGCGCTCCGCATTTCGAAGAAATGGAACTACTAGTCTTCAAGATACAAGAAAATTCAATACAGGTAGACCTACTGAAAAAGAATTATCTC
TTAAAGAAAAATATGAAAAACTCCAAGCCAAGATATTGTTATTAGAAGCTGAAAATGAACTATTAAAAAAGTTGGAAATGCTAGAAAGGAGCGTGGAATT
AGAAAAATAAAATTAATTACTTGCCAAAAATTTATAATGATTAAATCTATTTTACAAAAATACAATCTTAAGAATAAAGTTAGTTATTTATGTGAATTAG
CGGGCGTTTCACGTTCCGGATACTATAATTATTTTTCAAACAAATCGATTTTAAAGCGTAATAGAAAAGAAAGTCAAGAAATTAATTTATATGAAAATAT
TTTGACTGCATTTAATTTTAAGAATCGTAAGAAAGGTGCTAGGCAAATAAAAATGACTTTAAACAATTTTTTCGGTATTAATTATAATCTAAAACGCATT
AGAAGAATAATGAAAAAAATATAATATTATTTGTCCACATAGATCTGCCAATCCATATAGAAGAATGATGAAGGCTACTAAAGAGCACTCAGTTTTACCA
AACTTATTAAATAGAGAATTTAAACAGGATATACCAGCTAAAGTATTATTAACAGATATAACATATTTGTTTTATAAAAATGGTAAAAAGGCATATTTAT
CAACTGTTTTAGATGCATCTACTAATGAAGTTTTAGCATATAACTTATCTAAAAGTTTAAAAATAGATATTGTAACTGATACAATCAATAAACTAATGAA
TTCAGCTTCTTTTTTACATAAAGATGCATTTATTCATTCAGATCAAGGTGTTCATTATACAAGTCCGATTTTTCAAAAGAAACTTAAAGAAAATGGAATA
GGACAGTCTATGTCTAGACGTGGTAATTGTTGGGACAATGCCCCGCAAGAATCCTTCTTTGGACATTTAAAAGATGAAACATATATTAAAGATTGTGAAA
CTTTCGAGGAATTACAAGAAGAAATAGACGATTATATTGATTATCATAACAACTATAGACCTCAATGGAATTTAAAAAAGATGACTCCTGTTAATTACAG
AAATCATCTTCTTAATGTTGCATAGCCTTTTTTAAACTGTCCTTGACAAAGGGTACA
AATTATTTACAAGTGAAGAAATAAAAATATTATCTCAAAATAAATATGTAAAAAAAGTAAGCAGCAAAGGAATTACATATAATGATGAATTTAAAAGATT
ATTTATAGTAGAAAGTAAAAATGGCAAGTTACCAAGACAAATATTTGAAGAGAATGGTTTTGATATAGAAATTTTAGGTATGCACCGTGTTCATTCTGCT
AGTAAAAGATGGCGCTCCGCATTTCGAAGAAATGGAACTACTAGTCTTCAAGATACAAGAAAATTCAATACAGGTAGACCTACTGAAAAAGAATTATCTC
TTAAAGAAAAATATGAAAAACTCCAAGCCAAGATATTGTTATTAGAAGCTGAAAATGAACTATTAAAAAAGTTGGAAATGCTAGAAAGGAGCGTGGAATT
AGAAAAATAAAATTAATTACTTGCCAAAAATTTATAATGATTAAATCTATTTTACAAAAATACAATCTTAAGAATAAAGTTAGTTATTTATGTGAATTAG
CGGGCGTTTCACGTTCCGGATACTATAATTATTTTTCAAACAAATCGATTTTAAAGCGTAATAGAAAAGAAAGTCAAGAAATTAATTTATATGAAAATAT
TTTGACTGCATTTAATTTTAAGAATCGTAAGAAAGGTGCTAGGCAAATAAAAATGACTTTAAACAATTTTTTCGGTATTAATTATAATCTAAAACGCATT
AGAAGAATAATGAAAAAAATATAATATTATTTGTCCACATAGATCTGCCAATCCATATAGAAGAATGATGAAGGCTACTAAAGAGCACTCAGTTTTACCA
AACTTATTAAATAGAGAATTTAAACAGGATATACCAGCTAAAGTATTATTAACAGATATAACATATTTGTTTTATAAAAATGGTAAAAAGGCATATTTAT
CAACTGTTTTAGATGCATCTACTAATGAAGTTTTAGCATATAACTTATCTAAAAGTTTAAAAATAGATATTGTAACTGATACAATCAATAAACTAATGAA
TTCAGCTTCTTTTTTACATAAAGATGCATTTATTCATTCAGATCAAGGTGTTCATTATACAAGTCCGATTTTTCAAAAGAAACTTAAAGAAAATGGAATA
GGACAGTCTATGTCTAGACGTGGTAATTGTTGGGACAATGCCCCGCAAGAATCCTTCTTTGGACATTTAAAAGATGAAACATATATTAAAGATTGTGAAA
CTTTCGAGGAATTACAAGAAGAAATAGACGATTATATTGATTATCATAACAACTATAGACCTCAATGGAATTTAAAAAAGATGACTCCTGTTAATTACAG
AAATCATCTTCTTAATGTTGCATAGCCTTTTTTAAACTGTCCTTGACAAAGGGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1161 bp | 386 aa | 98 | 1258 | + | No |
Chemistry : DDE
ORF sequence :
MKINRKLYDRDFKINAVKVSYEKNSLKRYAEEIGILPCLLTRWRKEFQQFGTASFQGPGFVRVHPDQKRTFELEKRKKESELRFEILKQGAPFLLQGNLP
AYQFIKDNEKKYGVVRMCEVLGIGSNRYLTWKYKGISEKKKYLILLRKEITSIFLDFKKLKGKNQITKELNNRGFTIDHRRVSFHMKTLGLRRIKKKFKI
TTTDSKHSLYTPPNVLNRNFTVSEPGKFWVSDITYLHTTKGFLYLTIIMDLYDRKIIGWNISSELSTIKTTIPAWEMAVRNRKTEEGLVFHSDRGVQYAS
KAFAEKLESYNCIRSMSGKGNHFDNAVAEGFFSTLKRELIRGENRVMTPKQMRNQISEFIENWYNKKRIHTSLNFKTIEEFNTLNS
AYQFIKDNEKKYGVVRMCEVLGIGSNRYLTWKYKGISEKKKYLILLRKEITSIFLDFKKLKGKNQITKELNNRGFTIDHRRVSFHMKTLGLRRIKKKFKI
TTTDSKHSLYTPPNVLNRNFTVSEPGKFWVSDITYLHTTKGFLYLTIIMDLYDRKIIGWNISSELSTIKTTIPAWEMAVRNRKTEEGLVFHSDRGVQYAS
KAFAEKLESYNCIRSMSGKGNHFDNAVAEGFFSTLKRELIRGENRVMTPKQMRNQISEFIENWYNKKRIHTSLNFKTIEEFNTLNS
Blast result :
Comments
Genome in progress.
There is no -1 programmed frameshift.
ISFjo2 is 55% (ORFAB) aa similar to ISCce3.
There is no -1 programmed frameshift.
ISFjo2 is 55% (ORFAB) aa similar to ISCce3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.