ISFjo2

  • Family IS3
  • Group IS3
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAPM01000004 ND Flavobacterium johnsoniae
Flavobacterium johnsoniae UW101
Flavobacterium johnsoniae ATCC 17061
DNA section
IS Length : 1567 bp

Ends


IR Length : 27/36

IRL : TGTACCCTATAGAATAGACAATTAAAAAAAGCCTATTCTATGGGGTATTT
IRR : TGTACCCTTTGTCAAGGACAGTTTAAAAAAGGCTATGCAACATTAAGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTATCATCTCCAATTTTTT0

DNA sequence

TGTACCCTATAGAATAGACAATTAAAAAAAGCCTATTCTATGGGGTATTTTTATGTATAATTAAATAAATGATTATTAGGAGATGTTAAAATGAGCAAAA
AATTATTTACAAGTGAAGAAATAAAAATATTATCTCAAAATAAATATGTAAAAAAAGTAAGCAGCAAAGGAATTACATATAATGATGAATTTAAAAGATT
ATTTATAGTAGAAAGTAAAAATGGCAAGTTACCAAGACAAATATTTGAAGAGAATGGTTTTGATATAGAAATTTTAGGTATGCACCGTGTTCATTCTGCT
AGTAAAAGATGGCGCTCCGCATTTCGAAGAAATGGAACTACTAGTCTTCAAGATACAAGAAAATTCAATACAGGTAGACCTACTGAAAAAGAATTATCTC
TTAAAGAAAAATATGAAAAACTCCAAGCCAAGATATTGTTATTAGAAGCTGAAAATGAACTATTAAAAAAGTTGGAAATGCTAGAAAGGAGCGTGGAATT
AGAAAAATAAAATTAATTACTTGCCAAAAATTTATAATGATTAAATCTATTTTACAAAAATACAATCTTAAGAATAAAGTTAGTTATTTATGTGAATTAG
CGGGCGTTTCACGTTCCGGATACTATAATTATTTTTCAAACAAATCGATTTTAAAGCGTAATAGAAAAGAAAGTCAAGAAATTAATTTATATGAAAATAT
TTTGACTGCATTTAATTTTAAGAATCGTAAGAAAGGTGCTAGGCAAATAAAAATGACTTTAAACAATTTTTTCGGTATTAATTATAATCTAAAACGCATT
AGAAGAATAATGAAAAAAATATAATATTATTTGTCCACATAGATCTGCCAATCCATATAGAAGAATGATGAAGGCTACTAAAGAGCACTCAGTTTTACCA
AACTTATTAAATAGAGAATTTAAACAGGATATACCAGCTAAAGTATTATTAACAGATATAACATATTTGTTTTATAAAAATGGTAAAAAGGCATATTTAT
CAACTGTTTTAGATGCATCTACTAATGAAGTTTTAGCATATAACTTATCTAAAAGTTTAAAAATAGATATTGTAACTGATACAATCAATAAACTAATGAA
TTCAGCTTCTTTTTTACATAAAGATGCATTTATTCATTCAGATCAAGGTGTTCATTATACAAGTCCGATTTTTCAAAAGAAACTTAAAGAAAATGGAATA
GGACAGTCTATGTCTAGACGTGGTAATTGTTGGGACAATGCCCCGCAAGAATCCTTCTTTGGACATTTAAAAGATGAAACATATATTAAAGATTGTGAAA
CTTTCGAGGAATTACAAGAAGAAATAGACGATTATATTGATTATCATAACAACTATAGACCTCAATGGAATTTAAAAAAGATGACTCCTGTTAATTACAG
AAATCATCTTCTTAATGTTGCATAGCCTTTTTTAAACTGTCCTTGACAAAGGGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1161 bp386 aa981258+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKINRKLYDRDFKINAVKVSYEKNSLKRYAEEIGILPCLLTRWRKEFQQFGTASFQGPGFVRVHPDQKRTFELEKRKKESELRFEILKQGAPFLLQGNLP
AYQFIKDNEKKYGVVRMCEVLGIGSNRYLTWKYKGISEKKKYLILLRKEITSIFLDFKKLKGKNQITKELNNRGFTIDHRRVSFHMKTLGLRRIKKKFKI
TTTDSKHSLYTPPNVLNRNFTVSEPGKFWVSDITYLHTTKGFLYLTIIMDLYDRKIIGWNISSELSTIKTTIPAWEMAVRNRKTEEGLVFHSDRGVQYAS
KAFAEKLESYNCIRSMSGKGNHFDNAVAEGFFSTLKRELIRGENRVMTPKQMRNQISEFIENWYNKKRIHTSLNFKTIEEFNTLNS

 

Blast result :
Comments
Genome in progress.
There is no -1 programmed frameshift.
ISFjo2 is 55% (ORFAB) aa similar to ISCce3.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.