ISFtu2

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006570 ND Francisella tularensis
Francisella tularensis subspecies tularensis SchuS4
DNA section
IS Length : 865 bp

Ends


IR Length : 17

IRL : GGTTCTGTGCACAAAAAACTTAAATTATATTGAAAATAGCTAAACCGCTG
IRR : GGTTCTGTGCACAAAAATAAATATTCATCGTAACCAAATAAAAGTACAAG

Insertion site


Left flankDirect repeatRight flankDR Length
GCATTTTTATTATAAAACACCAG2

DNA sequence

GGTTCTGTGCACAAAAAACTTAAATTATATTGAAAATAGCTAAACCGCTGTTATTTAAGATTTGAAAAGCAATAAATATCAATGGTTTAGCAAATGAATT
ATCATATAAAAGAAGTATTCTGGTCAATTATTTTATCATTCTTAAAATCACAAAAAGGTATACATACCAATGATGAAGCCAAATTAAGATTGTTTATTGA
AGCTGTATTTTATGTGTTACGTACAGGCTGTCAATGGAGAATGTTACCATTTTATTATGGTAAATATAGATCAATACATAAGCGTTTTAAAGATTGGTGT
GATAAAGATATATTTTCTAGATTATTTAAATCAGTACAAAACCCTGATTTACAAGAAGTCATGCTTGATTCAACAATAGCAAGAGCACATGCTTGTGCTA
CGGGATATGATAAAGATGATAACCAAGCAATTGGTAGATCAGTTGGTAGGATAACCACTAAAATCCATGCTATGACTGATGCTTTAGGTAATCCAATAGA
AATATTGTTGTCAGAGGATAAAACTCATGATAGTAAAGTAGCTATAGATTTACTAAAAAATGTATATAATACAAAAGTTATCGCTGATAGAGCATATCAT
TCTAATGAAATCAGGCAGCATATTCAAGGTATATCCTCTGAAGCTGTTATCCCTTGTAAATCAAATACTCTAAACCATATACCTTTTGATAGTCATGTAT
ATAAAGAAAGACATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGATTTGATAAAACCATTTTAGCATATATAGGAAT
GATTAAATTAGCTTGTACTTTTATTTGGTTACGATGAATATTTATTTTTGTGCACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
744 bp247 aa94837+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNYHIKEVFWSIILSFLKSQKGIHTNDEAKLRLFIEAVFYVLRTGCQWRMLPFYYGKYRSIHKRFKDWCDKDIFSRLFKSVQNPDLQEVMLDSTIARAHA
CATGYDKDDNQAIGRSVGRITTKIHAMTDALGNPIEILLSEDKTHDSKVAIDLLKNVYNTKVIADRAYHSNEIRQHIQGISSEAVIPCKSNTLNHIPFDS
HVYKERHLIENFFSKIKHFRRVFSRFDKTILAYIGMIKLACTFIWLR

 

Blast result :
Comments
ISFtu2 is 57% aa similar to IS711.
References
1] Larsson,P., Oyston,P.C., Chain,P., Chu,M.C., Duffield,M., Fuxelius,H.H., Garcia,E., Halltorp,G., Johansson,D., Isherwood,K.E., Karp,P.D., Larsson,E., Liu,Y., Michell,S., Prior,J., Prior,R., Malfatti,S., Sjostedt,A., Svensson,K., Thompson,N., Vergez,L., Wagg,J.K., Wren,B.W., Lindler,L.E., Andersson,S.G., Forsman,M. and Titball,R.W.
(2005) Nat. Genet. 37 (2), 153-159