ISFtu2
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006570 | ND | Francisella tularensis | Francisella tularensis subspecies tularensis SchuS4 |
DNA section
IS Length : 865 bp
Ends
IR Length : 17
IRL : GGTTCTGTGCACAAAAAACTTAAATTATATTGAAAATAGCTAAACCGCTG
IRR : GGTTCTGTGCACAAAAATAAATATTCATCGTAACCAAATAAAAGTACAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCATTTTTAT | TA | TAAAACACCAG | 2 |
DNA sequence
GGTTCTGTGCACAAAAAACTTAAATTATATTGAAAATAGCTAAACCGCTGTTATTTAAGATTTGAAAAGCAATAAATATCAATGGTTTAGCAAATGAATT
ATCATATAAAAGAAGTATTCTGGTCAATTATTTTATCATTCTTAAAATCACAAAAAGGTATACATACCAATGATGAAGCCAAATTAAGATTGTTTATTGA
AGCTGTATTTTATGTGTTACGTACAGGCTGTCAATGGAGAATGTTACCATTTTATTATGGTAAATATAGATCAATACATAAGCGTTTTAAAGATTGGTGT
GATAAAGATATATTTTCTAGATTATTTAAATCAGTACAAAACCCTGATTTACAAGAAGTCATGCTTGATTCAACAATAGCAAGAGCACATGCTTGTGCTA
CGGGATATGATAAAGATGATAACCAAGCAATTGGTAGATCAGTTGGTAGGATAACCACTAAAATCCATGCTATGACTGATGCTTTAGGTAATCCAATAGA
AATATTGTTGTCAGAGGATAAAACTCATGATAGTAAAGTAGCTATAGATTTACTAAAAAATGTATATAATACAAAAGTTATCGCTGATAGAGCATATCAT
TCTAATGAAATCAGGCAGCATATTCAAGGTATATCCTCTGAAGCTGTTATCCCTTGTAAATCAAATACTCTAAACCATATACCTTTTGATAGTCATGTAT
ATAAAGAAAGACATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGATTTGATAAAACCATTTTAGCATATATAGGAAT
GATTAAATTAGCTTGTACTTTTATTTGGTTACGATGAATATTTATTTTTGTGCACAGAACC
ATCATATAAAAGAAGTATTCTGGTCAATTATTTTATCATTCTTAAAATCACAAAAAGGTATACATACCAATGATGAAGCCAAATTAAGATTGTTTATTGA
AGCTGTATTTTATGTGTTACGTACAGGCTGTCAATGGAGAATGTTACCATTTTATTATGGTAAATATAGATCAATACATAAGCGTTTTAAAGATTGGTGT
GATAAAGATATATTTTCTAGATTATTTAAATCAGTACAAAACCCTGATTTACAAGAAGTCATGCTTGATTCAACAATAGCAAGAGCACATGCTTGTGCTA
CGGGATATGATAAAGATGATAACCAAGCAATTGGTAGATCAGTTGGTAGGATAACCACTAAAATCCATGCTATGACTGATGCTTTAGGTAATCCAATAGA
AATATTGTTGTCAGAGGATAAAACTCATGATAGTAAAGTAGCTATAGATTTACTAAAAAATGTATATAATACAAAAGTTATCGCTGATAGAGCATATCAT
TCTAATGAAATCAGGCAGCATATTCAAGGTATATCCTCTGAAGCTGTTATCCCTTGTAAATCAAATACTCTAAACCATATACCTTTTGATAGTCATGTAT
ATAAAGAAAGACATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGATTTGATAAAACCATTTTAGCATATATAGGAAT
GATTAAATTAGCTTGTACTTTTATTTGGTTACGATGAATATTTATTTTTGTGCACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
744 bp | 247 aa | 94 | 837 | + | No |
Chemistry : DDE
ORF sequence :
MNYHIKEVFWSIILSFLKSQKGIHTNDEAKLRLFIEAVFYVLRTGCQWRMLPFYYGKYRSIHKRFKDWCDKDIFSRLFKSVQNPDLQEVMLDSTIARAHA
CATGYDKDDNQAIGRSVGRITTKIHAMTDALGNPIEILLSEDKTHDSKVAIDLLKNVYNTKVIADRAYHSNEIRQHIQGISSEAVIPCKSNTLNHIPFDS
HVYKERHLIENFFSKIKHFRRVFSRFDKTILAYIGMIKLACTFIWLR
CATGYDKDDNQAIGRSVGRITTKIHAMTDALGNPIEILLSEDKTHDSKVAIDLLKNVYNTKVIADRAYHSNEIRQHIQGISSEAVIPCKSNTLNHIPFDS
HVYKERHLIENFFSKIKHFRRVFSRFDKTILAYIGMIKLACTFIWLR
Blast result :
Comments
ISFtu2 is 57% aa similar to IS711.
References
1] Larsson,P., Oyston,P.C., Chain,P., Chu,M.C., Duffield,M., Fuxelius,H.H., Garcia,E., Halltorp,G., Johansson,D., Isherwood,K.E., Karp,P.D., Larsson,E., Liu,Y., Michell,S., Prior,J., Prior,R., Malfatti,S., Sjostedt,A., Svensson,K., Thompson,N., Vergez,L., Wagg,J.K., Wren,B.W., Lindler,L.E., Andersson,S.G., Forsman,M. and Titball,R.W.
(2005) Nat. Genet. 37 (2), 153-159
(2005) Nat. Genet. 37 (2), 153-159