ISEfa5

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY495588 Y Enterococcus faecium
Enterococcus faecium
DNA section
IS Length : 1514 bp

Ends


IR Length : 16/25

IRL : GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCA
IRR : GGCTCTTTGTCAATAAGGACTGATGGGTTGTACAAAATCAAATCTGGGTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCATTTTTATTTTAGGTATTAAAAAACATATCGTTCTCTAGTATGATTAAATC
ACGACAAAATAAACAACTGAGAGGACGATATGCTATATGAATGATTCTATCAAAAAAATGCTGCGATTAATAGAGAAAGATTTGATGATTACAGAGGTCT
CTTACGAGACCTTTCAGAAGAAAAAGACGTTGATCGTCGATGCTGTTTTCTCACCTGCTCCCCATACCTGTAGAAATTGTGGTTCTACTGTGGTAGATGG
AAACGGGAAAGTAATTGTAGTGAAAAATGGGAAGAAGGAAACGATTGTCCGCTTTGAACAATACAATCACATGCCTTTGGTTATGCGCTTAAAAAAGCAG
CGCTATACCTGTAAAAACTGTCGAACCCATTGGACGGCTCAAAGTTATTTTGTTCAACCCAGACATTCAATCGCGAATCATGTCAGATATAAAATTGCTT
CTTTACTGACTGAAAAAGTATCTTTATCTTTTATTGCGAAAAATTGTCAGGTATCTTTGACCACCGTTATTCGTACGTTGAAAGAGTTTAAAAGCTACTT
ACCAAAGCAATCTAAGAGGATTCTCCCCAGAGTATTGATGGTTGATGAATTTCGTTCGCACGCTTCCATAGAAGATAAAATGAGCTTTATTTGCGCAGAT
GGCGAAACAGGACAATTAATTGATGTCTTGCCTACGCGTAAATTGCCTCGATTAACAAGCTATTTCTTAGGCTGCGCTAATCCTGAAGAAGTAAAATTTT
TAGTCACGGACATGAACGCCGCCTACTTCCAGCTTACCAAACGTATTCTGCCAAATGCGAAAGTAGTGATTGATCGGTTTCATATTATCAAACACATGAA
TCAAGCCTTTAATGAGTTGCGTATCCGTGAAATGAATGAACTTCGTAAAGTAGGACAGAAAAGTCAGGCAGAAAAACTGAAAAAGAACTGGCGCTTTTTG
CTAAAAAATCGTGCAAACATCAACCATTATGAATACAAAACATGGAAAAGTTTTCGAGCACCAAAATACCCATTTCTTACGGAAGCGATGATGATTGATC
GATTGCTTGGCTTTTCTACGTCCCTGAAGGAGGCGTATCCCTATTTTCATGAATTAGTTGAAGCCTTTCGAGACAAAGACCCTGACTTATTTTTCTCCTT
ATTGGCAGAACTTCCCGAAACGTTAGATGACGGCTTTCGGGAAAAGCTCCAAAACCTTCTGACCTATGAAGAAGGCATCACCAACGCGATGATCTATCCT
TACACCAATGGAAAAATAGAAGCGAAGAATACCCATATAAAGACAATGAAACGAGTATCCTACGGATTTAAATCATTTGAGAACATGAGAATTAGAATCT
TTTTGATCAATCAATTAATCAAAGTAAGATAACAAAAAATCTGAGCCAGAATGAGGTTCATTCTGACCCAGATTTGATTTTGTACAACCCATCAGTCCTT
ATTGACAAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1296 bp431 aa861381+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNDSIKKMLRLIEKDLMITEVSYETFQKKKTLIVDAVFSPAPHTCRNCGSTVVDGNGKVIVVKNGKKETIVRFEQYNHMPLVMRLKKQRYTCKNCRTHWT
AQSYFVQPRHSIANHVRYKIASLLTEKVSLSFIAKNCQVSLTTVIRTLKEFKSYLPKQSKRILPRVLMVDEFRSHASIEDKMSFICADGETGQLIDVLPT
RKLPRLTSYFLGCANPEEVKFLVTDMNAAYFQLTKRILPNAKVVIDRFHIIKHMNQAFNELRIREMNELRKVGQKSQAEKLKKNWRFLLKNRANINHYEY
KTWKSFRAPKYPFLTEAMMIDRLLGFSTSLKEAYPYFHELVEAFRDKDPDLFFSLLAELPETLDDGFREKLQNLLTYEEGITNAMIYPYTNGKIEAKNTH
IKTMKRVSYGFKSFENMRIRIFLINQLIKVR

 

Blast result :
Comments
Complete IS element isolated between vanX and vanY of E. faecium isolated in Brazil.
ISEfa5 is 52% aa similar to IS1476.
References
1] Camargo,I.L.B.C., Godlman,G.H., Zanella,R.C., Brandileone,M.C.,Woodford,N. and Darini,A.L.C. (2004) Direct submission GenBank.
2] Camargo,I.L., Zanella,R.C., Brandileone,M.C., Pignatari,A.C., Goldman,G.H., Woodford,N. and Darini,A.L. (2005) Int. J. Med. Microbiol. 294 (8), 513-519