ISEfa5
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY495588 | Y | Enterococcus faecium | Enterococcus faecium |
DNA section
IS Length : 1514 bp
Ends
IR Length : 16/25
IRL : GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCA
IRR : GGCTCTTTGTCAATAAGGACTGATGGGTTGTACAAAATCAAATCTGGGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTATAATTTATGGGACTGATGAATCAGAATTGATTCTTCAGCCCCATTTTTATTTTAGGTATTAAAAAACATATCGTTCTCTAGTATGATTAAATC
ACGACAAAATAAACAACTGAGAGGACGATATGCTATATGAATGATTCTATCAAAAAAATGCTGCGATTAATAGAGAAAGATTTGATGATTACAGAGGTCT
CTTACGAGACCTTTCAGAAGAAAAAGACGTTGATCGTCGATGCTGTTTTCTCACCTGCTCCCCATACCTGTAGAAATTGTGGTTCTACTGTGGTAGATGG
AAACGGGAAAGTAATTGTAGTGAAAAATGGGAAGAAGGAAACGATTGTCCGCTTTGAACAATACAATCACATGCCTTTGGTTATGCGCTTAAAAAAGCAG
CGCTATACCTGTAAAAACTGTCGAACCCATTGGACGGCTCAAAGTTATTTTGTTCAACCCAGACATTCAATCGCGAATCATGTCAGATATAAAATTGCTT
CTTTACTGACTGAAAAAGTATCTTTATCTTTTATTGCGAAAAATTGTCAGGTATCTTTGACCACCGTTATTCGTACGTTGAAAGAGTTTAAAAGCTACTT
ACCAAAGCAATCTAAGAGGATTCTCCCCAGAGTATTGATGGTTGATGAATTTCGTTCGCACGCTTCCATAGAAGATAAAATGAGCTTTATTTGCGCAGAT
GGCGAAACAGGACAATTAATTGATGTCTTGCCTACGCGTAAATTGCCTCGATTAACAAGCTATTTCTTAGGCTGCGCTAATCCTGAAGAAGTAAAATTTT
TAGTCACGGACATGAACGCCGCCTACTTCCAGCTTACCAAACGTATTCTGCCAAATGCGAAAGTAGTGATTGATCGGTTTCATATTATCAAACACATGAA
TCAAGCCTTTAATGAGTTGCGTATCCGTGAAATGAATGAACTTCGTAAAGTAGGACAGAAAAGTCAGGCAGAAAAACTGAAAAAGAACTGGCGCTTTTTG
CTAAAAAATCGTGCAAACATCAACCATTATGAATACAAAACATGGAAAAGTTTTCGAGCACCAAAATACCCATTTCTTACGGAAGCGATGATGATTGATC
GATTGCTTGGCTTTTCTACGTCCCTGAAGGAGGCGTATCCCTATTTTCATGAATTAGTTGAAGCCTTTCGAGACAAAGACCCTGACTTATTTTTCTCCTT
ATTGGCAGAACTTCCCGAAACGTTAGATGACGGCTTTCGGGAAAAGCTCCAAAACCTTCTGACCTATGAAGAAGGCATCACCAACGCGATGATCTATCCT
TACACCAATGGAAAAATAGAAGCGAAGAATACCCATATAAAGACAATGAAACGAGTATCCTACGGATTTAAATCATTTGAGAACATGAGAATTAGAATCT
TTTTGATCAATCAATTAATCAAAGTAAGATAACAAAAAATCTGAGCCAGAATGAGGTTCATTCTGACCCAGATTTGATTTTGTACAACCCATCAGTCCTT
ATTGACAAAGAGCC
ACGACAAAATAAACAACTGAGAGGACGATATGCTATATGAATGATTCTATCAAAAAAATGCTGCGATTAATAGAGAAAGATTTGATGATTACAGAGGTCT
CTTACGAGACCTTTCAGAAGAAAAAGACGTTGATCGTCGATGCTGTTTTCTCACCTGCTCCCCATACCTGTAGAAATTGTGGTTCTACTGTGGTAGATGG
AAACGGGAAAGTAATTGTAGTGAAAAATGGGAAGAAGGAAACGATTGTCCGCTTTGAACAATACAATCACATGCCTTTGGTTATGCGCTTAAAAAAGCAG
CGCTATACCTGTAAAAACTGTCGAACCCATTGGACGGCTCAAAGTTATTTTGTTCAACCCAGACATTCAATCGCGAATCATGTCAGATATAAAATTGCTT
CTTTACTGACTGAAAAAGTATCTTTATCTTTTATTGCGAAAAATTGTCAGGTATCTTTGACCACCGTTATTCGTACGTTGAAAGAGTTTAAAAGCTACTT
ACCAAAGCAATCTAAGAGGATTCTCCCCAGAGTATTGATGGTTGATGAATTTCGTTCGCACGCTTCCATAGAAGATAAAATGAGCTTTATTTGCGCAGAT
GGCGAAACAGGACAATTAATTGATGTCTTGCCTACGCGTAAATTGCCTCGATTAACAAGCTATTTCTTAGGCTGCGCTAATCCTGAAGAAGTAAAATTTT
TAGTCACGGACATGAACGCCGCCTACTTCCAGCTTACCAAACGTATTCTGCCAAATGCGAAAGTAGTGATTGATCGGTTTCATATTATCAAACACATGAA
TCAAGCCTTTAATGAGTTGCGTATCCGTGAAATGAATGAACTTCGTAAAGTAGGACAGAAAAGTCAGGCAGAAAAACTGAAAAAGAACTGGCGCTTTTTG
CTAAAAAATCGTGCAAACATCAACCATTATGAATACAAAACATGGAAAAGTTTTCGAGCACCAAAATACCCATTTCTTACGGAAGCGATGATGATTGATC
GATTGCTTGGCTTTTCTACGTCCCTGAAGGAGGCGTATCCCTATTTTCATGAATTAGTTGAAGCCTTTCGAGACAAAGACCCTGACTTATTTTTCTCCTT
ATTGGCAGAACTTCCCGAAACGTTAGATGACGGCTTTCGGGAAAAGCTCCAAAACCTTCTGACCTATGAAGAAGGCATCACCAACGCGATGATCTATCCT
TACACCAATGGAAAAATAGAAGCGAAGAATACCCATATAAAGACAATGAAACGAGTATCCTACGGATTTAAATCATTTGAGAACATGAGAATTAGAATCT
TTTTGATCAATCAATTAATCAAAGTAAGATAACAAAAAATCTGAGCCAGAATGAGGTTCATTCTGACCCAGATTTGATTTTGTACAACCCATCAGTCCTT
ATTGACAAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1296 bp | 431 aa | 86 | 1381 | + | No |
Chemistry : Unknow
ORF sequence :
MNDSIKKMLRLIEKDLMITEVSYETFQKKKTLIVDAVFSPAPHTCRNCGSTVVDGNGKVIVVKNGKKETIVRFEQYNHMPLVMRLKKQRYTCKNCRTHWT
AQSYFVQPRHSIANHVRYKIASLLTEKVSLSFIAKNCQVSLTTVIRTLKEFKSYLPKQSKRILPRVLMVDEFRSHASIEDKMSFICADGETGQLIDVLPT
RKLPRLTSYFLGCANPEEVKFLVTDMNAAYFQLTKRILPNAKVVIDRFHIIKHMNQAFNELRIREMNELRKVGQKSQAEKLKKNWRFLLKNRANINHYEY
KTWKSFRAPKYPFLTEAMMIDRLLGFSTSLKEAYPYFHELVEAFRDKDPDLFFSLLAELPETLDDGFREKLQNLLTYEEGITNAMIYPYTNGKIEAKNTH
IKTMKRVSYGFKSFENMRIRIFLINQLIKVR
AQSYFVQPRHSIANHVRYKIASLLTEKVSLSFIAKNCQVSLTTVIRTLKEFKSYLPKQSKRILPRVLMVDEFRSHASIEDKMSFICADGETGQLIDVLPT
RKLPRLTSYFLGCANPEEVKFLVTDMNAAYFQLTKRILPNAKVVIDRFHIIKHMNQAFNELRIREMNELRKVGQKSQAEKLKKNWRFLLKNRANINHYEY
KTWKSFRAPKYPFLTEAMMIDRLLGFSTSLKEAYPYFHELVEAFRDKDPDLFFSLLAELPETLDDGFREKLQNLLTYEEGITNAMIYPYTNGKIEAKNTH
IKTMKRVSYGFKSFENMRIRIFLINQLIKVR
Blast result :
Comments
Complete IS element isolated between vanX and vanY of E. faecium isolated in Brazil.
ISEfa5 is 52% aa similar to IS1476.
ISEfa5 is 52% aa similar to IS1476.
References
1] Camargo,I.L.B.C., Godlman,G.H., Zanella,R.C., Brandileone,M.C.,Woodford,N. and Darini,A.L.C. (2004) Direct submission GenBank.
2] Camargo,I.L., Zanella,R.C., Brandileone,M.C., Pignatari,A.C., Goldman,G.H., Woodford,N. and Darini,A.L. (2005) Int. J. Med. Microbiol. 294 (8), 513-519
2] Camargo,I.L., Zanella,R.C., Brandileone,M.C., Pignatari,A.C., Goldman,G.H., Woodford,N. and Darini,A.L. (2005) Int. J. Med. Microbiol. 294 (8), 513-519