ISBcen21
- Family IS3
- Group IS51
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAVA01000021 | ND | Burkholderia cenocepacia | Burkholderia cenocepacia MC0-3 |
DNA section
IS Length : 1231 bp
Ends
IR Length : 31/41
IRL : TGGACCGGCCAGCCTTTCGTAGACATCTTCGAGCCATAATTTATGGCAAC
IRR : TGGACCGGCCAGAGTTTCATAGACACTCACGAGCCGTTTAACGCGTAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGAGTTGTC | GCTCGCGAGC | 0 |
DNA sequence
TGGACCGGCCAGCCTTTCGTAGACATCTTCGAGCCATAATTTATGGCAACCGAGGAGGTCAGTATGAGCGGCAAGCGGTACACGGATGAGTTCAAGATTG
AGGCAGTCAAGCAAGTCACCGAGCGAGGTCATTCGGTAGCTGATGTGGCGCAGCGGCTGGGCATCACGACCCACAGCCTTTACGCCTGGAAACTGAAGTT
CGGCAGGTCCGACGTCGTGCGGCGATCGGAGCTGGATCAGAGCGCCGAGGTTCGGCGACTGAAGGCCGAGCTCAAGCGCATGACCGAGGAGCGCGACATT
CTAAAAAAAGCCGCCGCGTACTTTGCAAAGGGATAGCGGCAAGGTACGCGTTCATGCGAGCCCATCTCGGCGAGTTCCGCCTGCATTCAATGTGCCGAGT
CCTTGGCGTGCATCGCAGCGGCTATTACGTCTGGCAGCGGCAGACAGTCGGTGTCCGCAAGCGTGAGGATGATCGATTGCTCGGTCTGATCAAGCATTCC
TGGCTGGCCAGCGGCGGCGTCTATGGCTACCGCAAGGTCACGGTGGATTTGCGTGAATCGGGAGAAACGTGCAGCCGTCACCGCGTCCATCGCCTCATGA
AAGGCGAAGGTCTGCGGGCAGAAGTGGGCTATGGCAGCAAGCCCCGCTATCGGGGTGGTCCGGTCGGCGTAATCGCCAACGTGCTGAACCGTGAGTTCGC
GCCAACCGCACCGAACCGGGTCTGGGTAACGGACATCACGTACATCCGGACCTACGAGGGCTGGCTGTATCTGGCGGCTGTTATGGATCTGTACTCGCGC
CAGATCGTCGGTTGGGCTACGCGCTCGACGATGACCAGCGATCTGGTTTTACAGGCGCTGTTGGCTGCGGTTTGGAAACGCAAACCGGGACCCGGTGTCA
TGGTGCATTCCGACCAGGGCAGTCAATTCACGAGCGATGACTGGCAGTCATTCCTGAAGGCACACCATATGGTGCCAAGCATGAGTCGGCGCGGTAATTG
CCACGACAATGCCGTGGCCGAGAGCTTCTTCAGTGCCCTAAAGAAGGAGCGAATCAAGCGGCGCATCTATCCGAGTCGGGCGACCGCGACCTCGGACTTG
TTCGATTACATCGAAATGTTTTATAACCCGGTTCGTCGGCATGGTTCCGCCGGCGATCTTTCACCGATTGAGTTCGAGCGGCGCTACGCGTTAAACGGCT
CGTGAGTGTCTATGAAACTCTGGCCGGTCCA
AGGCAGTCAAGCAAGTCACCGAGCGAGGTCATTCGGTAGCTGATGTGGCGCAGCGGCTGGGCATCACGACCCACAGCCTTTACGCCTGGAAACTGAAGTT
CGGCAGGTCCGACGTCGTGCGGCGATCGGAGCTGGATCAGAGCGCCGAGGTTCGGCGACTGAAGGCCGAGCTCAAGCGCATGACCGAGGAGCGCGACATT
CTAAAAAAAGCCGCCGCGTACTTTGCAAAGGGATAGCGGCAAGGTACGCGTTCATGCGAGCCCATCTCGGCGAGTTCCGCCTGCATTCAATGTGCCGAGT
CCTTGGCGTGCATCGCAGCGGCTATTACGTCTGGCAGCGGCAGACAGTCGGTGTCCGCAAGCGTGAGGATGATCGATTGCTCGGTCTGATCAAGCATTCC
TGGCTGGCCAGCGGCGGCGTCTATGGCTACCGCAAGGTCACGGTGGATTTGCGTGAATCGGGAGAAACGTGCAGCCGTCACCGCGTCCATCGCCTCATGA
AAGGCGAAGGTCTGCGGGCAGAAGTGGGCTATGGCAGCAAGCCCCGCTATCGGGGTGGTCCGGTCGGCGTAATCGCCAACGTGCTGAACCGTGAGTTCGC
GCCAACCGCACCGAACCGGGTCTGGGTAACGGACATCACGTACATCCGGACCTACGAGGGCTGGCTGTATCTGGCGGCTGTTATGGATCTGTACTCGCGC
CAGATCGTCGGTTGGGCTACGCGCTCGACGATGACCAGCGATCTGGTTTTACAGGCGCTGTTGGCTGCGGTTTGGAAACGCAAACCGGGACCCGGTGTCA
TGGTGCATTCCGACCAGGGCAGTCAATTCACGAGCGATGACTGGCAGTCATTCCTGAAGGCACACCATATGGTGCCAAGCATGAGTCGGCGCGGTAATTG
CCACGACAATGCCGTGGCCGAGAGCTTCTTCAGTGCCCTAAAGAAGGAGCGAATCAAGCGGCGCATCTATCCGAGTCGGGCGACCGCGACCTCGGACTTG
TTCGATTACATCGAAATGTTTTATAACCCGGTTCGTCGGCATGGTTCCGCCGGCGATCTTTCACCGATTGAGTTCGAGCGGCGCTACGCGTTAAACGGCT
CGTGAGTGTCTATGAAACTCTGGCCGGTCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
297 bp | 98 aa | 40 | 336 | + | No |
Description : First part of the transposase
ORF sequence :
MATEEVSMSGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKLKFGRSDVVRRSELDQSAEVRRLKAELKRMTEERDILKKAAAYFAKG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1062 bp | 353 aa | 144 | 1205 | + | No |
Description : Second part of the transposase
ORF sequence :
CGAAAGHHDPQPLRLETEVRQVRRRAAIGAGSERRGSATEGRAQAHDRGARHSKKSRRVLCKGIAARYAFMRAHLGEFRLHSMCRVLGVHRSGYYVWQRQ
TVGVRKREDDRLLGLIKHSWLASGGVYGYRKVTVDLRESGETCSRHRVHRLMKGEGLRAEVGYGSKPRYRGGPVGVIANVLNREFAPTAPNRVWVTDITY
IRTYEGWLYLAAVMDLYSRQIVGWATRSTMTSDLVLQALLAAVWKRKPGPGVMVHSDQGSQFTSDDWQSFLKAHHMVPSMSRRGNCHDNAVAESFFSALK
KERIKRRIYPSRATATSDLFDYIEMFYNPVRRHGSAGDLSPIEFERRYALNGS
TVGVRKREDDRLLGLIKHSWLASGGVYGYRKVTVDLRESGETCSRHRVHRLMKGEGLRAEVGYGSKPRYRGGPVGVIANVLNREFAPTAPNRVWVTDITY
IRTYEGWLYLAAVMDLYSRQIVGWATRSTMTSDLVLQALLAAVWKRKPGPGVMVHSDQGSQFTSDDWQSFLKAHHMVPSMSRRGNCHDNAVAESFFSALK
KERIKRRIYPSRATATSDLFDYIEMFYNPVRRHGSAGDLSPIEFERRYALNGS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1166 bp | 387 aa | 40 | 1205 | + | Yes |
Chemistry : DDE
ORF sequence :
MATEEVSMSGKRYTDEFKIEAVKQVTERGHSVADVAQRLGITTHSLYAWKLKFGRSDVVRRSELDQSAEVRRLKAELKRMTEERDILKKSRRVLCKGIAA
RYAFMRAHLGEFRLHSMCRVLGVHRSGYYVWQRQTVGVRKREDDRLLGLIKHSWLASGGVYGYRKVTVDLRESGETCSRHRVHRLMKGEGLRAEVGYGSK
PRYRGGPVGVIANVLNREFAPTAPNRVWVTDITYIRTYEGWLYLAAVMDLYSRQIVGWATRSTMTSDLVLQALLAAVWKRKPGPGVMVHSDQGSQFTSDD
WQSFLKAHHMVPSMSRRGNCHDNAVAESFFSALKKERIKRRIYPSRATATSDLFDYIEMFYNPVRRHGSAGDLSPIEFERRYALNGS
RYAFMRAHLGEFRLHSMCRVLGVHRSGYYVWQRQTVGVRKREDDRLLGLIKHSWLASGGVYGYRKVTVDLRESGETCSRHRVHRLMKGEGLRAEVGYGSK
PRYRGGPVGVIANVLNREFAPTAPNRVWVTDITYIRTYEGWLYLAAVMDLYSRQIVGWATRSTMTSDLVLQALLAAVWKRKPGPGVMVHSDQGSQFTSDD
WQSFLKAHHMVPSMSRRGNCHDNAVAESFFSALKKERIKRRIYPSRATATSDLFDYIEMFYNPVRRHGSAGDLSPIEFERRYALNGS
Blast result :
Comments
ISBcen21 is 90% (ORFA) aa similar to ISXac3 and 76% (ORFB) aa similar to ISAisp2. The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.