ISCce3
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAVC01000059 | ND | Clostridium cellulolyticum | Clostridium cellulolyticum H10 |
DNA section
IS Length : 1289 bp
Ends
IR Length : 31/45
IRL : TGACCTTACCCCAATTTGATGGACACACCGAATGGCTGGTATAATAAAAC
IRR : TGACCTTTCCCTGATAAATTAGACACAACGAATGGCGGGATTTCTCCGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAATGGATAT | AAT | TCAAATTCAC | 3 |
DNA sequence
TGACCTTACCCCAATTTGATGGACACACCGAATGGCTGGTATAATAAAACTAGTCGGAGGTACCCATCATGAAACGTTATGATAATAGTTTTAAAGAACA
AGCGGTCCGTCTTGTTACAGAGCAAGGTAAAAGTGTATCAATTGTGGCTAAAGACATTGGAATCCACGAAAACACTCTATACAAATGGATTGACCAGTAC
AAAACTCATAAAGAGAATGCTTTCCCAGGTAGCGGCAACCTAAGACCTGAAGATGAAGAACTCAGGAAACTTAAGAAGCGTGTTGCAGACCTTGAAATGG
AGAATGAATTACTAAAAAAAGTAACGGCAATCTTCGCGAAAGACCGGAAATAATATATCCTATCATTCACAAATACCGCTTCAAATTTCCTGTTCAGAAG
ATGTGCCAAATACTAAAAATATCAAGAAGCGGTTATTATGCTTGGATTAAAAGGCCTGAAAGCTTGCGCAAGAAAAGGAATGTGGAACTTCTTGAAAAAA
TCAGAAACATTCACAAAGTATCCCGTGAAACCTATGGAAGCCCCCGGATAACCAAGGCTTTAAAGAATGAAGGCATAAACTGTGGTAAAAATCGTATAGC
TAAACTGATGAAGGAAAATAATATTACTGCTAAAACTAGGAAGAAGTTTAAGGCTACAACTAATTCAAAGCACAATTACCCGGTTGCAGATAATATCCTA
AATCAGGACTTTACAGCTTCTAGGCCTAATCAAATCTGGGTTGCAGATATTACTTATATTCCTACAGACGAGGGTTGGCTCTATTTGGCTGCCATTGTTG
ATCTCTACAACAGAAAAGTTGTTGGATGGGCAATGGATATCACTATGACAAAACAGCTTTGTATAGATGCTTTAAAGCAAGCCATCGGCAGGCAGAGACC
ATCAAATGGAGTGATTCATCATTCCGACCGAGGGGTCCAATATGCCAGCAAGGAATATCAGAAAGTACTGAAAAGCAATGGTTTTACAGCAAGTATGAGT
CGCAAGGGTAACTGTTACGATAATGCCTGTATGGAATCATTCTTTGGAACTCTCAAAACGGAGCTTATTTACTTAACAAGGTTCAAAACAAGGACTGAGG
CCCGTCTGGCTATCTTTGAGTATATTGAAGTCTTTTATAATCGGATACGATTACATTCAAAGCTTGGCTATAAGTCGCCTGTGGAATTTGAAAAGCAAAA
CAAAGCTGCTTAAATAAAAGTTAATAAGATACAAAGGAAAACGGAGAAATCCCGCCATTCGTTGTGTCTAATTTATCAGGGAAAGGTCA
AGCGGTCCGTCTTGTTACAGAGCAAGGTAAAAGTGTATCAATTGTGGCTAAAGACATTGGAATCCACGAAAACACTCTATACAAATGGATTGACCAGTAC
AAAACTCATAAAGAGAATGCTTTCCCAGGTAGCGGCAACCTAAGACCTGAAGATGAAGAACTCAGGAAACTTAAGAAGCGTGTTGCAGACCTTGAAATGG
AGAATGAATTACTAAAAAAAGTAACGGCAATCTTCGCGAAAGACCGGAAATAATATATCCTATCATTCACAAATACCGCTTCAAATTTCCTGTTCAGAAG
ATGTGCCAAATACTAAAAATATCAAGAAGCGGTTATTATGCTTGGATTAAAAGGCCTGAAAGCTTGCGCAAGAAAAGGAATGTGGAACTTCTTGAAAAAA
TCAGAAACATTCACAAAGTATCCCGTGAAACCTATGGAAGCCCCCGGATAACCAAGGCTTTAAAGAATGAAGGCATAAACTGTGGTAAAAATCGTATAGC
TAAACTGATGAAGGAAAATAATATTACTGCTAAAACTAGGAAGAAGTTTAAGGCTACAACTAATTCAAAGCACAATTACCCGGTTGCAGATAATATCCTA
AATCAGGACTTTACAGCTTCTAGGCCTAATCAAATCTGGGTTGCAGATATTACTTATATTCCTACAGACGAGGGTTGGCTCTATTTGGCTGCCATTGTTG
ATCTCTACAACAGAAAAGTTGTTGGATGGGCAATGGATATCACTATGACAAAACAGCTTTGTATAGATGCTTTAAAGCAAGCCATCGGCAGGCAGAGACC
ATCAAATGGAGTGATTCATCATTCCGACCGAGGGGTCCAATATGCCAGCAAGGAATATCAGAAAGTACTGAAAAGCAATGGTTTTACAGCAAGTATGAGT
CGCAAGGGTAACTGTTACGATAATGCCTGTATGGAATCATTCTTTGGAACTCTCAAAACGGAGCTTATTTACTTAACAAGGTTCAAAACAAGGACTGAGG
CCCGTCTGGCTATCTTTGAGTATATTGAAGTCTTTTATAATCGGATACGATTACATTCAAAGCTTGGCTATAAGTCGCCTGTGGAATTTGAAAAGCAAAA
CAAAGCTGCTTAAATAAAAGTTAATAAGATACAAAGGAAAACGGAGAAATCCCGCCATTCGTTGTGTCTAATTTATCAGGGAAAGGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
285 bp | 94 aa | 69 | 353 | + | No |
Description : First part of the transposase
ORF sequence :
MKRYDNSFKEQAVRLVTEQGKSVSIVAKDIGIHENTLYKWIDQYKTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKKVTAIFAKDRK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
906 bp | 301 aa | 308 | 1213 | + | No |
Description : Second part of the transposase
ORF sequence :
ITKKSNGNLRERPEIIYPIIHKYRFKFPVQKMCQILKISRSGYYAWIKRPESLRKKRNVELLEKIRNIHKVSRETYGSPRITKALKNEGINCGKNRIAKL
MKENNITAKTRKKFKATTNSKHNYPVADNILNQDFTASRPNQIWVADITYIPTDEGWLYLAAIVDLYNRKVVGWAMDITMTKQLCIDALKQAIGRQRPSN
GVIHHSDRGVQYASKEYQKVLKSNGFTASMSRKGNCYDNACMESFFGTLKTELIYLTRFKTRTEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKA
A
MKENNITAKTRKKFKATTNSKHNYPVADNILNQDFTASRPNQIWVADITYIPTDEGWLYLAAIVDLYNRKVVGWAMDITMTKQLCIDALKQAIGRQRPSN
GVIHHSDRGVQYASKEYQKVLKSNGFTASMSRKGNCYDNACMESFFGTLKTELIYLTRFKTRTEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKA
A
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1145 bp | 384 aa | 69 | 1213 | + | Yes |
Chemistry : DDE
ORF sequence :
MKRYDNSFKEQAVRLVTEQGKSVSIVAKDIGIHENTLYKWIDQYKTHKENAFPGSGNLRPEDEELRKLKKRVADLEMENELLKITKKSNGNLRERPEIIY
PIIHKYRFKFPVQKMCQILKISRSGYYAWIKRPESLRKKRNVELLEKIRNIHKVSRETYGSPRITKALKNEGINCGKNRIAKLMKENNITAKTRKKFKAT
TNSKHNYPVADNILNQDFTASRPNQIWVADITYIPTDEGWLYLAAIVDLYNRKVVGWAMDITMTKQLCIDALKQAIGRQRPSNGVIHHSDRGVQYASKEY
QKVLKSNGFTASMSRKGNCYDNACMESFFGTLKTELIYLTRFKTRTEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA
PIIHKYRFKFPVQKMCQILKISRSGYYAWIKRPESLRKKRNVELLEKIRNIHKVSRETYGSPRITKALKNEGINCGKNRIAKLMKENNITAKTRKKFKAT
TNSKHNYPVADNILNQDFTASRPNQIWVADITYIPTDEGWLYLAAIVDLYNRKVVGWAMDITMTKQLCIDALKQAIGRQRPSNGVIHHSDRGVQYASKEY
QKVLKSNGFTASMSRKGNCYDNACMESFFGTLKTELIYLTRFKTRTEARLAIFEYIEVFYNRIRLHSKLGYKSPVEFEKQNKAA
Blast result :
Comments
Genome in progress.
ISCce3 is 63% % (ORFA)aa similar to IS1076 and 64% (ORFB) aa similar to ISPa20 The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
ISCce3 is 63% % (ORFA)aa similar to IS1076 and 64% (ORFB) aa similar to ISPa20 The third ORF is a putative ORFAB transposase reconstructed in sillico by -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct Submission GenBank