ISTth3
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005835 | ND | Thermus thermophilus | Thermus thermophilus HB27 |
DNA section
IS Length : 1682 bp
Ends
IR Length : 17/21
IRL : CATTCCGCACCCCTCTCCCTTGGCCTTAGGATTTTGGGATGGAAACCACA
IRR : CATTCCGCACCCCCTTCACTCCAGCAGGTAATATCGCCCGGCCCCCAGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTTACACC | GA | GTGAAGGGGG | 2 |
DNA sequence
CATTCCGCACCCCTCTCCCTTGGCCTTAGGATTTTGGGATGGAAACCACACCCAACCTACAGGTGTACGACCTGGGCCACCTGGGCCTGGTGGCCAGCAT
CGTGGATCAGATAGGACTGGTACAGACCGTAGACCAGTTCGTGGGCCCAAGGCCGGGCGAAAAGGTCTCCACTGGCATGGCCCTCAAGGCCGCCATACTG
AACGCCCTGGGCTTCGTCACCTCTCCCCTCTACCTCTTCGGCCACTTCTTCCAGGGCAAGCCCACCGAGCTGCTCCTGGGGCCCGGCATCACCCCCGAAC
TTTTGAACGACGACCGCATGGGCCGGATGCTGGACAGCCTGTACGCGGCCGGGGTCACCGAGCTGTTTGTGGAGGTGGCTAAATCTGCCCGCAGAGCCTT
TCCCTTTCCCGTGCGGGCTCTTCACGTGGACTCCACCAGCTTTCACGTCCACGGGGCGTACGGGAGCGGGGAAGAGGGCCAGAGCGATACGGGGGACGAG
CCCCTGGTCATCCGCCTCACCCACGGCTACAGCCGGGACCACCGCCCAGACCTCAAGCAGTGGGTGATGAACCTGATCTGCGCCGATACCGGGGGGATTC
CCCTGCTCTTCGCTCCTGGGGATGGGAACCAGTCGGATCAGGAGGCCTTGGTTCCCCTGCTGGCGCGCTACCGCCAGGGCCTGGAACTGGGGGAGGTGGT
GGTGCTGGACGGGGCCAGCTACAGCCAGGAGAACCTGGGGGCCCTGCAGGGGTTCTCCTGGGTCATGCGGGTGCCGGCCACCCTAAAGGAGGCCAGGGCC
CTGCTACGCAAGGAGTTACCCCAGGAGGCCTGGAGGCCTCTGCTGCCCGGCTACCGGGGGCTGGAGGTGGAGAGCGAGTACGGGGGTGTGCGGCAGCGCT
GGCTGCTGGTGGAGAGCCAGGAGCGGGCCAGGATGGAGGAAGCGAGCCTCCGGCAGCGGATAGTGCGGGCCGAAGGGGAGGCGCGGAAGGTCCTGGGCCA
GCTGACGGCTCGGACCTTCGCCTGTGAGGCGGACGCCCGGCGGGCCCTGAGCGAGGCCAGCGGCCGACTTCCTTTGCACCGGCTGGTCTACCTGGGAGTG
CAGGAGGAACGCCAATGGGAGCGGGTGGGCCGGCCGGGCAAGGGGGAGCGACCCTTGGCGGTGGTCTACCGCCTGCGGGCCCGCCTGGAGGTGGATCAGG
AGAAGCTGGAGCGGGCGAGGCGGGGCCTGGGGCGATTCCTCCTGGCCACCAACGTGCTGGACCGGGAGGGGCTTCCCCCTCAGGAGGTGCTGAGGCGGTA
CAAGGACCAGGCCCGGACGGTGGAGCGGGGGTTCCGGTTTCTGAAGGACCCCCTGTTCTTTGCGGAGAGCACCTTCTTGAAGCGGCCCGAGCGGGTGATG
GCCCTAGGGATGGTGATGGCCCTGGCCCTTCTGGTGTACGCCCTGGGGGAGTGGGCGCTGAGGCGGAGGCTTTGGGAGGCGGGGTCCAGCCTGCCGGACC
AGAAGGGGAGACCCACAGCCAAGCCCACCTTGCGCTGGGTGTTTCAACTCTTTATGTGGGTCCGACTGGTGGAGCTGGGGGGCAGGTGGTTCGTCCTCAA
CCTGGCTCCCCATCACGAGACCGCGGCGCGCCTCCTGGGGGCCGGGCGATATTACCTGCTGGAGTGAAGGGGGTGCGGAATG
CGTGGATCAGATAGGACTGGTACAGACCGTAGACCAGTTCGTGGGCCCAAGGCCGGGCGAAAAGGTCTCCACTGGCATGGCCCTCAAGGCCGCCATACTG
AACGCCCTGGGCTTCGTCACCTCTCCCCTCTACCTCTTCGGCCACTTCTTCCAGGGCAAGCCCACCGAGCTGCTCCTGGGGCCCGGCATCACCCCCGAAC
TTTTGAACGACGACCGCATGGGCCGGATGCTGGACAGCCTGTACGCGGCCGGGGTCACCGAGCTGTTTGTGGAGGTGGCTAAATCTGCCCGCAGAGCCTT
TCCCTTTCCCGTGCGGGCTCTTCACGTGGACTCCACCAGCTTTCACGTCCACGGGGCGTACGGGAGCGGGGAAGAGGGCCAGAGCGATACGGGGGACGAG
CCCCTGGTCATCCGCCTCACCCACGGCTACAGCCGGGACCACCGCCCAGACCTCAAGCAGTGGGTGATGAACCTGATCTGCGCCGATACCGGGGGGATTC
CCCTGCTCTTCGCTCCTGGGGATGGGAACCAGTCGGATCAGGAGGCCTTGGTTCCCCTGCTGGCGCGCTACCGCCAGGGCCTGGAACTGGGGGAGGTGGT
GGTGCTGGACGGGGCCAGCTACAGCCAGGAGAACCTGGGGGCCCTGCAGGGGTTCTCCTGGGTCATGCGGGTGCCGGCCACCCTAAAGGAGGCCAGGGCC
CTGCTACGCAAGGAGTTACCCCAGGAGGCCTGGAGGCCTCTGCTGCCCGGCTACCGGGGGCTGGAGGTGGAGAGCGAGTACGGGGGTGTGCGGCAGCGCT
GGCTGCTGGTGGAGAGCCAGGAGCGGGCCAGGATGGAGGAAGCGAGCCTCCGGCAGCGGATAGTGCGGGCCGAAGGGGAGGCGCGGAAGGTCCTGGGCCA
GCTGACGGCTCGGACCTTCGCCTGTGAGGCGGACGCCCGGCGGGCCCTGAGCGAGGCCAGCGGCCGACTTCCTTTGCACCGGCTGGTCTACCTGGGAGTG
CAGGAGGAACGCCAATGGGAGCGGGTGGGCCGGCCGGGCAAGGGGGAGCGACCCTTGGCGGTGGTCTACCGCCTGCGGGCCCGCCTGGAGGTGGATCAGG
AGAAGCTGGAGCGGGCGAGGCGGGGCCTGGGGCGATTCCTCCTGGCCACCAACGTGCTGGACCGGGAGGGGCTTCCCCCTCAGGAGGTGCTGAGGCGGTA
CAAGGACCAGGCCCGGACGGTGGAGCGGGGGTTCCGGTTTCTGAAGGACCCCCTGTTCTTTGCGGAGAGCACCTTCTTGAAGCGGCCCGAGCGGGTGATG
GCCCTAGGGATGGTGATGGCCCTGGCCCTTCTGGTGTACGCCCTGGGGGAGTGGGCGCTGAGGCGGAGGCTTTGGGAGGCGGGGTCCAGCCTGCCGGACC
AGAAGGGGAGACCCACAGCCAAGCCCACCTTGCGCTGGGTGTTTCAACTCTTTATGTGGGTCCGACTGGTGGAGCTGGGGGGCAGGTGGTTCGTCCTCAA
CCTGGCTCCCCATCACGAGACCGCGGCGCGCCTCCTGGGGGCCGGGCGATATTACCTGCTGGAGTGAAGGGGGTGCGGAATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1629 bp | 542 aa | 39 | 1667 | + | No |
Chemistry : DDE
ORF sequence :
METTPNLQVYDLGHLGLVASIVDQIGLVQTVDQFVGPRPGEKVSTGMALKAAILNALGFVTSPLYLFGHFFQGKPTELLLGPGITPELLNDDRMGRMLDS
LYAAGVTELFVEVAKSARRAFPFPVRALHVDSTSFHVHGAYGSGEEGQSDTGDEPLVIRLTHGYSRDHRPDLKQWVMNLICADTGGIPLLFAPGDGNQSD
QEALVPLLARYRQGLELGEVVVLDGASYSQENLGALQGFSWVMRVPATLKEARALLRKELPQEAWRPLLPGYRGLEVESEYGGVRQRWLLVESQERARME
EASLRQRIVRAEGEARKVLGQLTARTFACEADARRALSEASGRLPLHRLVYLGVQEERQWERVGRPGKGERPLAVVYRLRARLEVDQEKLERARRGLGRF
LLATNVLDREGLPPQEVLRRYKDQARTVERGFRFLKDPLFFAESTFLKRPERVMALGMVMALALLVYALGEWALRRRLWEAGSSLPDQKGRPTAKPTLRW
VFQLFMWVRLVELGGRWFVLNLAPHHETAARLLGAGRYYLLE
LYAAGVTELFVEVAKSARRAFPFPVRALHVDSTSFHVHGAYGSGEEGQSDTGDEPLVIRLTHGYSRDHRPDLKQWVMNLICADTGGIPLLFAPGDGNQSD
QEALVPLLARYRQGLELGEVVVLDGASYSQENLGALQGFSWVMRVPATLKEARALLRKELPQEAWRPLLPGYRGLEVESEYGGVRQRWLLVESQERARME
EASLRQRIVRAEGEARKVLGQLTARTFACEADARRALSEASGRLPLHRLVYLGVQEERQWERVGRPGKGERPLAVVYRLRARLEVDQEKLERARRGLGRF
LLATNVLDREGLPPQEVLRRYKDQARTVERGFRFLKDPLFFAESTFLKRPERVMALGMVMALALLVYALGEWALRRRLWEAGSSLPDQKGRPTAKPTLRW
VFQLFMWVRLVELGGRWFVLNLAPHHETAARLLGAGRYYLLE
Blast result :
Comments
ISTth3 is 52% aa similar to ISPlu4.
There are 1 complete copy in Thermus thermophilus HB27 plasmid pTT27 and two complete and one partial copy in Thermus thermophilus HB27 genome.
There are 1 complete copy in Thermus thermophilus HB27 plasmid pTT27 and two complete and one partial copy in Thermus thermophilus HB27 genome.
References
1] Henne,A., Bruggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.P., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.J. (2004) Nat. Biotechnol. 22 (5), 547-553