ISTth3

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005835 ND Thermus thermophilus
Thermus thermophilus HB27
DNA section
IS Length : 1682 bp

Ends


IR Length : 17/21

IRL : CATTCCGCACCCCTCTCCCTTGGCCTTAGGATTTTGGGATGGAAACCACA
IRR : CATTCCGCACCCCCTTCACTCCAGCAGGTAATATCGCCCGGCCCCCAGGA

Insertion site


Left flankDirect repeatRight flankDR Length
GCTTACACCGAGTGAAGGGGG2

DNA sequence

CATTCCGCACCCCTCTCCCTTGGCCTTAGGATTTTGGGATGGAAACCACACCCAACCTACAGGTGTACGACCTGGGCCACCTGGGCCTGGTGGCCAGCAT
CGTGGATCAGATAGGACTGGTACAGACCGTAGACCAGTTCGTGGGCCCAAGGCCGGGCGAAAAGGTCTCCACTGGCATGGCCCTCAAGGCCGCCATACTG
AACGCCCTGGGCTTCGTCACCTCTCCCCTCTACCTCTTCGGCCACTTCTTCCAGGGCAAGCCCACCGAGCTGCTCCTGGGGCCCGGCATCACCCCCGAAC
TTTTGAACGACGACCGCATGGGCCGGATGCTGGACAGCCTGTACGCGGCCGGGGTCACCGAGCTGTTTGTGGAGGTGGCTAAATCTGCCCGCAGAGCCTT
TCCCTTTCCCGTGCGGGCTCTTCACGTGGACTCCACCAGCTTTCACGTCCACGGGGCGTACGGGAGCGGGGAAGAGGGCCAGAGCGATACGGGGGACGAG
CCCCTGGTCATCCGCCTCACCCACGGCTACAGCCGGGACCACCGCCCAGACCTCAAGCAGTGGGTGATGAACCTGATCTGCGCCGATACCGGGGGGATTC
CCCTGCTCTTCGCTCCTGGGGATGGGAACCAGTCGGATCAGGAGGCCTTGGTTCCCCTGCTGGCGCGCTACCGCCAGGGCCTGGAACTGGGGGAGGTGGT
GGTGCTGGACGGGGCCAGCTACAGCCAGGAGAACCTGGGGGCCCTGCAGGGGTTCTCCTGGGTCATGCGGGTGCCGGCCACCCTAAAGGAGGCCAGGGCC
CTGCTACGCAAGGAGTTACCCCAGGAGGCCTGGAGGCCTCTGCTGCCCGGCTACCGGGGGCTGGAGGTGGAGAGCGAGTACGGGGGTGTGCGGCAGCGCT
GGCTGCTGGTGGAGAGCCAGGAGCGGGCCAGGATGGAGGAAGCGAGCCTCCGGCAGCGGATAGTGCGGGCCGAAGGGGAGGCGCGGAAGGTCCTGGGCCA
GCTGACGGCTCGGACCTTCGCCTGTGAGGCGGACGCCCGGCGGGCCCTGAGCGAGGCCAGCGGCCGACTTCCTTTGCACCGGCTGGTCTACCTGGGAGTG
CAGGAGGAACGCCAATGGGAGCGGGTGGGCCGGCCGGGCAAGGGGGAGCGACCCTTGGCGGTGGTCTACCGCCTGCGGGCCCGCCTGGAGGTGGATCAGG
AGAAGCTGGAGCGGGCGAGGCGGGGCCTGGGGCGATTCCTCCTGGCCACCAACGTGCTGGACCGGGAGGGGCTTCCCCCTCAGGAGGTGCTGAGGCGGTA
CAAGGACCAGGCCCGGACGGTGGAGCGGGGGTTCCGGTTTCTGAAGGACCCCCTGTTCTTTGCGGAGAGCACCTTCTTGAAGCGGCCCGAGCGGGTGATG
GCCCTAGGGATGGTGATGGCCCTGGCCCTTCTGGTGTACGCCCTGGGGGAGTGGGCGCTGAGGCGGAGGCTTTGGGAGGCGGGGTCCAGCCTGCCGGACC
AGAAGGGGAGACCCACAGCCAAGCCCACCTTGCGCTGGGTGTTTCAACTCTTTATGTGGGTCCGACTGGTGGAGCTGGGGGGCAGGTGGTTCGTCCTCAA
CCTGGCTCCCCATCACGAGACCGCGGCGCGCCTCCTGGGGGCCGGGCGATATTACCTGCTGGAGTGAAGGGGGTGCGGAATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1629 bp542 aa391667+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

METTPNLQVYDLGHLGLVASIVDQIGLVQTVDQFVGPRPGEKVSTGMALKAAILNALGFVTSPLYLFGHFFQGKPTELLLGPGITPELLNDDRMGRMLDS
LYAAGVTELFVEVAKSARRAFPFPVRALHVDSTSFHVHGAYGSGEEGQSDTGDEPLVIRLTHGYSRDHRPDLKQWVMNLICADTGGIPLLFAPGDGNQSD
QEALVPLLARYRQGLELGEVVVLDGASYSQENLGALQGFSWVMRVPATLKEARALLRKELPQEAWRPLLPGYRGLEVESEYGGVRQRWLLVESQERARME
EASLRQRIVRAEGEARKVLGQLTARTFACEADARRALSEASGRLPLHRLVYLGVQEERQWERVGRPGKGERPLAVVYRLRARLEVDQEKLERARRGLGRF
LLATNVLDREGLPPQEVLRRYKDQARTVERGFRFLKDPLFFAESTFLKRPERVMALGMVMALALLVYALGEWALRRRLWEAGSSLPDQKGRPTAKPTLRW
VFQLFMWVRLVELGGRWFVLNLAPHHETAARLLGAGRYYLLE

 

Blast result :
Comments
ISTth3 is 52% aa similar to ISPlu4.
There are 1 complete copy in Thermus thermophilus HB27 plasmid pTT27 and two complete and one partial copy in Thermus thermophilus HB27 genome.
References
1] Henne,A., Bruggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.P., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.J. (2004) Nat. Biotechnol. 22 (5), 547-553