ISfinder Mirror Site

ISTasp1

Family IS5
Group IS903

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NZ_GG697169	ND	Thalassiobium sp.	Thalassiobium sp. R2A62

DNA section

IS Length : 1053 bp

Ends

IR Length : 24/29

IRL : GGAGCTTTGTTGCACAAATGGGTTGATGGGATTCACTGTATGAATCCAGC
IRR : GGCTTTGTTGCACAAATTGGGTGAAGGACGTTCTTGCCCTTACCCCAGAC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GTGGTGACGT		TGTCTAAGAC	0

DNA sequence

GGAGCTTTGTTGCACAAATGGGTTGATGGGATTCACTGTATGAATCCAGCGTGATAGCTGCAGGGGATGAGCAGCTGGTCCCCTACTAAATATAAGACCA
AGAATTGGTCGTCTTACAATGACAGTTTGAAGCGGCGCGGATCGTTGTCGGTCTGGTTTGATCCAGAGATGGTGTGGACGCCGCCGCCAAACGGCAAACG
CGGTCGGCAACAGCAATTCAGTGACGCCGCTATTCAAACGTGTCTGACGCTCAAAGTCCTTTTTGGCATGCCGCTCCGCCAGACAACCGGGTTCGTTCAG
AGCTTGCTGCAGTTGGTCGGGCTTTATTGGTCAGTGCCGGATTTCAGCACTCTTTGCCGCCGCCAGAAAACGCTGAACGTGAGCCTGCCCTATCGTGGCG
GTGCTGGCCCGTTGAATCTTCTTATCGATAGTACGGGGATCAAGGCCGAGGGTGAAGGCGAGTGGAATGCGCGTAAGCATGGCGGCTCTAAACGCCGCAT
ATGGCGCAAGATACACATAGGTATCGACGAAGAAACGCTGGAAGTGCGGGCAGTCGAAGTCACGGGCAGCAACATCGGGGATGCTCCCGTGCTGCCCGCA
CTCCTGAACCAAATCCCGCTTGATCAGGACATCGGCAGCGTCACCGCAGACGGGGCGTATGACACGCGTAAATGTCACGAGGCAATTGCCGCCCGAGGTG
CCCATGTAGTGATCCCGCCACGCAAGAATGCAAAGCCCTGGAAGCCCACGAGCGCCGGAGCAATTGCCCGCAACGATGCGGTCAATGCACAACGATATCT
GGGCCGCACGTTGTGGCGACACTGGAGCGGATACCATCGCAGAAGCCGCGTCGAAACCAAGATGCATTGTATGAAACTACTGGGCCAATCGTTGATGGCG
AGGGACTTCGATCGCCAGGTCGCGGAAATCCAAGTCCGCATCGCCGTCCTTAACCGCTATACGGCTCTTGGCATACCTATCACTAAGCCCGTAGGCTAAA
TCCGTCTGGGGTAAGGGCAAGAACGTCCTTCACCCAATTTGTGCAACAAAGCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
933 bp	310 aa	67	999	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSWSPTKYKTKNWSSYNDSLKRRGSLSVWFDPEMVWTPPPNGKRGRQQQFSDAAIQTCLTLKVLFGMPLRQTTGFVQSLLQLVGLYWSVPDFSTLCRRQ
KTLNVSLPYRGGAGPLNLLIDSTGIKAEGEGEWNARKHGGSKRRIWRKIHIGIDEETLEVRAVEVTGSNIGDAPVLPALLNQIPLDQDIGSVTADGAYDT
RKCHEAIAARGAHVVIPPRKNAKPWKPTSAGAIARNDAVNAQRYLGRTLWRHWSGYHRRSRVETKMHCMKLLGQSLMARDFDRQVAEIQVRIAVLNRYTA
LGIPITKPVG

Blast result :

Comments

ISTasp1 is 90% aa similar to ISRusp1.

References

1] ISfinder annotation (2010)
2] Suzuki,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2009) Direct submission GenBank.