ISLrh4
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013198 | ND | Lactobacillus rhamnosus | Lactobacillus rhamnosus ATCC 53103 Lactobacillus rhamnosus GG |
DNA section
IS Length : 1577 bp
Ends
IR Length : 17/23
IRL : CATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAAAGGGAGCG
IRR : GACGGCGTCAACTTTTTGTGGGTTTAACTTGTAAACTTTTTGCTAGAATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGCGCATA | GGCTGTAAG | TGGCTTTATG | 9 |
TTTAATTTCC | GGGTTCAC | TTTAATAGTT | 8 |
GCGACTGGTG | CTCATAGGT | CGTTCTGTGT | 9 |
GTGAATCAAG | CATATCATA | AGACACATAG | 9 |
AACGCGCATA | GGCTGTAAG | GGCTGTAAGT | 9 |
CGAAAGTTTG | ATCAACAAG | GCACGAACTA | 9 |
TTTAATTTCC | GGGTTCAC | TTTAATAGTT | 8 |
GCGACTGGTG | CTCATAGGT | CGTTCTGTGT | 9 |
GTGAATCAAG | CATATCATA | AGACACATAG | 9 |
CGCCGGTTCG | CGCTTAGTA | CGCTTAGTAA | 9 |
DNA sequence
CATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAAAGGGAGCGAATCCCTTCGTGCTAGAATGTTAATTGCAAGAAAAACACGATAGCAGTAG
GAGGAATTCGCTCTTGTCACCTATAGTACAACAAATCATTTTAGAAATGTTGAAAGAAATTGATGAATCTGTCATGGAGATGGTCGCGGGCAAGCTGGAT
TTAAGTCAATTCATTTTAACCAATCAGGAAAACTTTCGTGAGCACCTCTGCCAGTTAGTTGGGCAGGCACTGGAACAAGTGGACCAAGCTATTATGGACA
GTGCTTACCGCCGTCGATTCTATAGCGTCAAAGATAAGCGGGAACGCACTTACTTGGCATCCATTGGCTCACTGGTTTTCACCCGACGTTATTATCAAGA
TAAACGGACTGGCGAGCGTGTCTTCTTGCTTGATGAACTCGTTGGTATTGAGAAGCGTAGCCGACTTTCGCTCGACCTCAAAGCTAAGCTGCTGGAAGAT
GCCGCCCAAATGTCTTACAAGCAATCAGGAGATCGTAACGGCGGGGGTACAAAACCATCGAAGAGCACCGTCATGCATGTTGTTCATAGAGACGGGAAGG
CCATCAGCGCTTTGGATCAGTTAAAGGATCAACCAATGCCCGTACCGGAAACATTATTTGTCGAAGCCGATGAAGATCATGTCCCCCATCAGGACGGCAC
CAATCATTTCTTGAAAATGGTTTATGTACATGAAGGTTATCGGTCTGTGGGTAAGAAGTTTCAGTTGATTAGGCCATTTTATATTACCGGTGAATACCCG
GGAACAGCTGGTACTGAAGAAATCTGGCAAACCACGCTTGATTGCATCATGAAACAATATGGCGGTCAGATGCCCAAACGCTTTTTTCTGGCCGGTGATG
GTGCCAGTTGGATCAAAACCGGGGCCGATTTTCTACCCAACTGCACGGTGGTCTACGATAAATTTCACCTACGTAAAGCGTGCAAACAAGCGGCAATTGG
CGTACCCGGTAATCTGGGCGATATTCTCATGCATTGGGCGTTACAAGGGCACTCAAGCTATCTAAATGATTATTTCCGTGTTCGGCTCAATGACCCTCAG
TTACGGTCGTCAGAACGCAAAGCTGTCCGACAAGCACGAACGCTCATTCACAAGAATTGGAAACAAATTCAGGCCAACAATGATCCAGACTTTCACGGGA
CATCAGCTGAAGGTCATATTAGTCATATGCTTTCAGAGCGCTTCAGTTCGCGGCCAATGGGCTGGTCACAAACTGGCACAGACAATTTATCACAGACGCG
GGTATACGTGCTTAAGGGCGGAAACGTTTTTGAGCGGTTAGAAGCCGAAGCCAAGGAACGTCACCAAACAAAGATTGATATTCGCGTTGATGATCGTATT
AAGATTCAGTTTAAATCAGCAGCCACGAAATACTCACAAGCGGCGCAAGCAGCGTTTGTAGAACTCGCTAGTGGGAAACATCGCGGCTGGCAATACGGTA
TCACACATCAGTTGTAAGTTGAAAAAGCATTCTAGCAAAAAGTTTACAAGTTAAACCCACAAAAAGTTGACGCCGTC
GAGGAATTCGCTCTTGTCACCTATAGTACAACAAATCATTTTAGAAATGTTGAAAGAAATTGATGAATCTGTCATGGAGATGGTCGCGGGCAAGCTGGAT
TTAAGTCAATTCATTTTAACCAATCAGGAAAACTTTCGTGAGCACCTCTGCCAGTTAGTTGGGCAGGCACTGGAACAAGTGGACCAAGCTATTATGGACA
GTGCTTACCGCCGTCGATTCTATAGCGTCAAAGATAAGCGGGAACGCACTTACTTGGCATCCATTGGCTCACTGGTTTTCACCCGACGTTATTATCAAGA
TAAACGGACTGGCGAGCGTGTCTTCTTGCTTGATGAACTCGTTGGTATTGAGAAGCGTAGCCGACTTTCGCTCGACCTCAAAGCTAAGCTGCTGGAAGAT
GCCGCCCAAATGTCTTACAAGCAATCAGGAGATCGTAACGGCGGGGGTACAAAACCATCGAAGAGCACCGTCATGCATGTTGTTCATAGAGACGGGAAGG
CCATCAGCGCTTTGGATCAGTTAAAGGATCAACCAATGCCCGTACCGGAAACATTATTTGTCGAAGCCGATGAAGATCATGTCCCCCATCAGGACGGCAC
CAATCATTTCTTGAAAATGGTTTATGTACATGAAGGTTATCGGTCTGTGGGTAAGAAGTTTCAGTTGATTAGGCCATTTTATATTACCGGTGAATACCCG
GGAACAGCTGGTACTGAAGAAATCTGGCAAACCACGCTTGATTGCATCATGAAACAATATGGCGGTCAGATGCCCAAACGCTTTTTTCTGGCCGGTGATG
GTGCCAGTTGGATCAAAACCGGGGCCGATTTTCTACCCAACTGCACGGTGGTCTACGATAAATTTCACCTACGTAAAGCGTGCAAACAAGCGGCAATTGG
CGTACCCGGTAATCTGGGCGATATTCTCATGCATTGGGCGTTACAAGGGCACTCAAGCTATCTAAATGATTATTTCCGTGTTCGGCTCAATGACCCTCAG
TTACGGTCGTCAGAACGCAAAGCTGTCCGACAAGCACGAACGCTCATTCACAAGAATTGGAAACAAATTCAGGCCAACAATGATCCAGACTTTCACGGGA
CATCAGCTGAAGGTCATATTAGTCATATGCTTTCAGAGCGCTTCAGTTCGCGGCCAATGGGCTGGTCACAAACTGGCACAGACAATTTATCACAGACGCG
GGTATACGTGCTTAAGGGCGGAAACGTTTTTGAGCGGTTAGAAGCCGAAGCCAAGGAACGTCACCAAACAAAGATTGATATTCGCGTTGATGATCGTATT
AAGATTCAGTTTAAATCAGCAGCCACGAAATACTCACAAGCGGCGCAAGCAGCGTTTGTAGAACTCGCTAGTGGGAAACATCGCGGCTGGCAATACGGTA
TCACACATCAGTTGTAAGTTGAAAAAGCATTCTAGCAAAAAGTTTACAAGTTAAACCCACAAAAAGTTGACGCCGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1404 bp | 467 aa | 114 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MSPIVQQIILEMLKEIDESVMEMVAGKLDLSQFILTNQENFREHLCQLVGQALEQVDQAIMDSAYRRRFYSVKDKRERTYLASIGSLVFTRRYYQDKRTG
ERVFLLDELVGIEKRSRLSLDLKAKLLEDAAQMSYKQSGDRNGGGTKPSKSTVMHVVHRDGKAISALDQLKDQPMPVPETLFVEADEDHVPHQDGTNHFL
KMVYVHEGYRSVGKKFQLIRPFYITGEYPGTAGTEEIWQTTLDCIMKQYGGQMPKRFFLAGDGASWIKTGADFLPNCTVVYDKFHLRKACKQAAIGVPGN
LGDILMHWALQGHSSYLNDYFRVRLNDPQLRSSERKAVRQARTLIHKNWKQIQANNDPDFHGTSAEGHISHMLSERFSSRPMGWSQTGTDNLSQTRVYVL
KGGNVFERLEAEAKERHQTKIDIRVDDRIKIQFKSAATKYSQAAQAAFVELASGKHRGWQYGITHQL
ERVFLLDELVGIEKRSRLSLDLKAKLLEDAAQMSYKQSGDRNGGGTKPSKSTVMHVVHRDGKAISALDQLKDQPMPVPETLFVEADEDHVPHQDGTNHFL
KMVYVHEGYRSVGKKFQLIRPFYITGEYPGTAGTEEIWQTTLDCIMKQYGGQMPKRFFLAGDGASWIKTGADFLPNCTVVYDKFHLRKACKQAAIGVPGN
LGDILMHWALQGHSSYLNDYFRVRLNDPQLRSSERKAVRQARTLIHKNWKQIQANNDPDFHGTSAEGHISHMLSERFSSRPMGWSQTGTDNLSQTRVYVL
KGGNVFERLEAEAKERHQTKIDIRVDDRIKIQFKSAATKYSQAAQAAFVELASGKHRGWQYGITHQL
Blast result :
Comments
References