ISNth2

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010718 ND Natranaerobius thermophilus
Natranaerobius thermophilus JW/NM-WN-LF
DNA section
IS Length : 1561 bp

Ends


IR Length : 15/22

IRL : GTTATTGTAAAATTACTGTAGGATTTTTTGGAGAAAGCAGGAAGGAAAGG
IRR : GATCGTGTCAAGCCACTGTAGGTTAAAAAGAAACCTTAATTCTCCTAGAT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCTATTAAGAAAAGTATTACTTCGTTTGA9
ATTTCAACAAAACTTTTAGATTTCCTTTGA9
AAAAACCTAAAAAGCTTACATATGGCTTGA9

DNA sequence

GTTATTGTAAAATTACTGTAGGATTTTTTGGAGAAAGCAGGAAGGAAAGGAAGCAAAAAAGAAGAGGAACCTCACATTCTCCGCACGAGAATGAAGTATA
CCCAAAAAAGTAAGGAGTGAGGTTCCTCATGGAAATAATTCAACTTGTAGAAGAAAAAATCCTTCAAGTTTCAGAAAAAGTGTTAAATGTTTTAGACGGA
GAAATAGAGTACGATACATTCACAAAGCTACTAAAAGAAGAGCTAGACGGTTTAGGTAGTGATATTCTTAAAGAAGTACTAGAAGCATTGGATGCCCAAA
TAAAAGAAAATAGAAGAGATCGTAAAGGTTGGGTCGTAGAAAGGAAAGCTGACCCCAAGAGTATCTTAACCCCATTTGGTGATATGGTATACAACCGAAC
ATATTATAAAAATAAAGAAACAGGTGAATATAAATATCTAGCTGATGAAAAAGCTGGCATAACCTCACATATGCGAGTAGATTCTACTTTAAAATCAGAT
ATAGCTGATGCAGCCACTAAGGTGTCGTATGAGAAAGCGACAGAAGAAGTGAGTAGGTTTAACCAAGACCTAAAATTAAGTAAACAGACAGTAGCCAATA
CAGTGAAAGAATTTGAATTAGAACCTCTAGAGCAACCAGAAGAAAAGAAAAAAGTATCAAACCTTTACATAGAGGCAGATGAAGATCATTTGTCTATGCA
AACTTCGAAGAGATCTGAAACAAAGCTAATTTATGTCCATGAAGGAATAAAAGGTAAAAAACGTAGATCTCTTAAAAATTGTCAACATTTCACAACAATA
ACTGAATCCCCGGATAAATTTTGGTTAACAGTATGTGACTATATCGAATCACATTATGACACAAAGGACACAAATATTTTCATATCAGGAGATGGGGCTA
AATGGATCCGAGTAGGTGAAGAATATATCCCAAATGCGACATATATATTGGATAAATTTCATCTATCCAAATACATAATAGCAGCTACCGGTCATGCCCC
AAAGCTAAGGAGACAGATATATAAGAACATTAAAAACCTAGATCAAGAAGCAGTATTTGAAAATTTACAAGAAGCACTTACAAAGGCAGATACAGAAGCT
AGACAGAAACGCATAATGGCAACAATTAAATATATTAAAAACAACTGGGATGGCATAGAGGCATCAGTAAACCACCCTGAAGTAGGTTGTAGTGCTGAAG
GCCATGTAAGCCATATTTTAGCATCAAGAATGAGTAGTCGACCAATGGCCTGGAGTGAAAAAGGCGCAACTAAAATGGCCGAGATGTTGGCTACAAAAGC
TAATGGAAAATCAGTAAAAGAAGCTTACTTATCCACAAAAGGTCGTCAAGAAGCTGAAATAGTTAACCTACAGAACCAAATAAAACAAGAACTAAAAAAA
CTTACAACTAAAAAGAAACTAGGAAAAGCCAACAATGGCAATGTACCTTTGATGAATGGAAAGTACAACTTAACAAGAACGGCTATAAAAGGGTTGAACA
GGAAACAGATTATCTAGGAGAATTAAGGTTTCTTTTTAACCTACAGTGGCTTGACACGATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1389 bp462 aa1291517+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEIIQLVEEKILQVSEKVLNVLDGEIEYDTFTKLLKEELDGLGSDILKEVLEALDAQIKENRRDRKGWVVERKADPKSILTPFGDMVYNRTYYKNKETGE
YKYLADEKAGITSHMRVDSTLKSDIADAATKVSYEKATEEVSRFNQDLKLSKQTVANTVKEFELEPLEQPEEKKKVSNLYIEADEDHLSMQTSKRSETKL
IYVHEGIKGKKRRSLKNCQHFTTITESPDKFWLTVCDYIESHYDTKDTNIFISGDGAKWIRVGEEYIPNATYILDKFHLSKYIIAATGHAPKLRRQIYKN
IKNLDQEAVFENLQEALTKADTEARQKRIMATIKYIKNNWDGIEASVNHPEVGCSAEGHVSHILASRMSSRPMAWSEKGATKMAEMLATKANGKSVKEAY
LSTKGRQEAEIVNLQNQIKQELKKLTTKKKLGKANNGNVPLMNGKYNLTRTAIKGLNRKQII

 

Blast result :
Comments
References