ISNth2
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010718 | ND | Natranaerobius thermophilus | Natranaerobius thermophilus JW/NM-WN-LF |
DNA section
IS Length : 1561 bp
Ends
IR Length : 15/22
IRL : GTTATTGTAAAATTACTGTAGGATTTTTTGGAGAAAGCAGGAAGGAAAGG
IRR : GATCGTGTCAAGCCACTGTAGGTTAAAAAGAAACCTTAATTCTCCTAGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCTATTAAG | AAAAGTATT | ACTTCGTTTGA | 9 |
ATTTCAACAA | AACTTTTAG | ATTTCCTTTGA | 9 |
AAAAACCTAA | AAAGCTTAC | ATATGGCTTGA | 9 |
DNA sequence
GTTATTGTAAAATTACTGTAGGATTTTTTGGAGAAAGCAGGAAGGAAAGGAAGCAAAAAAGAAGAGGAACCTCACATTCTCCGCACGAGAATGAAGTATA
CCCAAAAAAGTAAGGAGTGAGGTTCCTCATGGAAATAATTCAACTTGTAGAAGAAAAAATCCTTCAAGTTTCAGAAAAAGTGTTAAATGTTTTAGACGGA
GAAATAGAGTACGATACATTCACAAAGCTACTAAAAGAAGAGCTAGACGGTTTAGGTAGTGATATTCTTAAAGAAGTACTAGAAGCATTGGATGCCCAAA
TAAAAGAAAATAGAAGAGATCGTAAAGGTTGGGTCGTAGAAAGGAAAGCTGACCCCAAGAGTATCTTAACCCCATTTGGTGATATGGTATACAACCGAAC
ATATTATAAAAATAAAGAAACAGGTGAATATAAATATCTAGCTGATGAAAAAGCTGGCATAACCTCACATATGCGAGTAGATTCTACTTTAAAATCAGAT
ATAGCTGATGCAGCCACTAAGGTGTCGTATGAGAAAGCGACAGAAGAAGTGAGTAGGTTTAACCAAGACCTAAAATTAAGTAAACAGACAGTAGCCAATA
CAGTGAAAGAATTTGAATTAGAACCTCTAGAGCAACCAGAAGAAAAGAAAAAAGTATCAAACCTTTACATAGAGGCAGATGAAGATCATTTGTCTATGCA
AACTTCGAAGAGATCTGAAACAAAGCTAATTTATGTCCATGAAGGAATAAAAGGTAAAAAACGTAGATCTCTTAAAAATTGTCAACATTTCACAACAATA
ACTGAATCCCCGGATAAATTTTGGTTAACAGTATGTGACTATATCGAATCACATTATGACACAAAGGACACAAATATTTTCATATCAGGAGATGGGGCTA
AATGGATCCGAGTAGGTGAAGAATATATCCCAAATGCGACATATATATTGGATAAATTTCATCTATCCAAATACATAATAGCAGCTACCGGTCATGCCCC
AAAGCTAAGGAGACAGATATATAAGAACATTAAAAACCTAGATCAAGAAGCAGTATTTGAAAATTTACAAGAAGCACTTACAAAGGCAGATACAGAAGCT
AGACAGAAACGCATAATGGCAACAATTAAATATATTAAAAACAACTGGGATGGCATAGAGGCATCAGTAAACCACCCTGAAGTAGGTTGTAGTGCTGAAG
GCCATGTAAGCCATATTTTAGCATCAAGAATGAGTAGTCGACCAATGGCCTGGAGTGAAAAAGGCGCAACTAAAATGGCCGAGATGTTGGCTACAAAAGC
TAATGGAAAATCAGTAAAAGAAGCTTACTTATCCACAAAAGGTCGTCAAGAAGCTGAAATAGTTAACCTACAGAACCAAATAAAACAAGAACTAAAAAAA
CTTACAACTAAAAAGAAACTAGGAAAAGCCAACAATGGCAATGTACCTTTGATGAATGGAAAGTACAACTTAACAAGAACGGCTATAAAAGGGTTGAACA
GGAAACAGATTATCTAGGAGAATTAAGGTTTCTTTTTAACCTACAGTGGCTTGACACGATC
CCCAAAAAAGTAAGGAGTGAGGTTCCTCATGGAAATAATTCAACTTGTAGAAGAAAAAATCCTTCAAGTTTCAGAAAAAGTGTTAAATGTTTTAGACGGA
GAAATAGAGTACGATACATTCACAAAGCTACTAAAAGAAGAGCTAGACGGTTTAGGTAGTGATATTCTTAAAGAAGTACTAGAAGCATTGGATGCCCAAA
TAAAAGAAAATAGAAGAGATCGTAAAGGTTGGGTCGTAGAAAGGAAAGCTGACCCCAAGAGTATCTTAACCCCATTTGGTGATATGGTATACAACCGAAC
ATATTATAAAAATAAAGAAACAGGTGAATATAAATATCTAGCTGATGAAAAAGCTGGCATAACCTCACATATGCGAGTAGATTCTACTTTAAAATCAGAT
ATAGCTGATGCAGCCACTAAGGTGTCGTATGAGAAAGCGACAGAAGAAGTGAGTAGGTTTAACCAAGACCTAAAATTAAGTAAACAGACAGTAGCCAATA
CAGTGAAAGAATTTGAATTAGAACCTCTAGAGCAACCAGAAGAAAAGAAAAAAGTATCAAACCTTTACATAGAGGCAGATGAAGATCATTTGTCTATGCA
AACTTCGAAGAGATCTGAAACAAAGCTAATTTATGTCCATGAAGGAATAAAAGGTAAAAAACGTAGATCTCTTAAAAATTGTCAACATTTCACAACAATA
ACTGAATCCCCGGATAAATTTTGGTTAACAGTATGTGACTATATCGAATCACATTATGACACAAAGGACACAAATATTTTCATATCAGGAGATGGGGCTA
AATGGATCCGAGTAGGTGAAGAATATATCCCAAATGCGACATATATATTGGATAAATTTCATCTATCCAAATACATAATAGCAGCTACCGGTCATGCCCC
AAAGCTAAGGAGACAGATATATAAGAACATTAAAAACCTAGATCAAGAAGCAGTATTTGAAAATTTACAAGAAGCACTTACAAAGGCAGATACAGAAGCT
AGACAGAAACGCATAATGGCAACAATTAAATATATTAAAAACAACTGGGATGGCATAGAGGCATCAGTAAACCACCCTGAAGTAGGTTGTAGTGCTGAAG
GCCATGTAAGCCATATTTTAGCATCAAGAATGAGTAGTCGACCAATGGCCTGGAGTGAAAAAGGCGCAACTAAAATGGCCGAGATGTTGGCTACAAAAGC
TAATGGAAAATCAGTAAAAGAAGCTTACTTATCCACAAAAGGTCGTCAAGAAGCTGAAATAGTTAACCTACAGAACCAAATAAAACAAGAACTAAAAAAA
CTTACAACTAAAAAGAAACTAGGAAAAGCCAACAATGGCAATGTACCTTTGATGAATGGAAAGTACAACTTAACAAGAACGGCTATAAAAGGGTTGAACA
GGAAACAGATTATCTAGGAGAATTAAGGTTTCTTTTTAACCTACAGTGGCTTGACACGATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1389 bp | 462 aa | 129 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MEIIQLVEEKILQVSEKVLNVLDGEIEYDTFTKLLKEELDGLGSDILKEVLEALDAQIKENRRDRKGWVVERKADPKSILTPFGDMVYNRTYYKNKETGE
YKYLADEKAGITSHMRVDSTLKSDIADAATKVSYEKATEEVSRFNQDLKLSKQTVANTVKEFELEPLEQPEEKKKVSNLYIEADEDHLSMQTSKRSETKL
IYVHEGIKGKKRRSLKNCQHFTTITESPDKFWLTVCDYIESHYDTKDTNIFISGDGAKWIRVGEEYIPNATYILDKFHLSKYIIAATGHAPKLRRQIYKN
IKNLDQEAVFENLQEALTKADTEARQKRIMATIKYIKNNWDGIEASVNHPEVGCSAEGHVSHILASRMSSRPMAWSEKGATKMAEMLATKANGKSVKEAY
LSTKGRQEAEIVNLQNQIKQELKKLTTKKKLGKANNGNVPLMNGKYNLTRTAIKGLNRKQII
YKYLADEKAGITSHMRVDSTLKSDIADAATKVSYEKATEEVSRFNQDLKLSKQTVANTVKEFELEPLEQPEEKKKVSNLYIEADEDHLSMQTSKRSETKL
IYVHEGIKGKKRRSLKNCQHFTTITESPDKFWLTVCDYIESHYDTKDTNIFISGDGAKWIRVGEEYIPNATYILDKFHLSKYIIAATGHAPKLRRQIYKN
IKNLDQEAVFENLQEALTKADTEARQKRIMATIKYIKNNWDGIEASVNHPEVGCSAEGHVSHILASRMSSRPMAWSEKGATKMAEMLATKANGKSVKEAY
LSTKGRQEAEIVNLQNQIKQELKKLTTKKKLGKANNGNVPLMNGKYNLTRTAIKGLNRKQII
Blast result :
Comments
References