ISLbu1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_013192 | ND | Leptotrichia buccalis | Leptotrichia buccalis DSM 1135 |
DNA section
IS Length : 1519 bp
Ends
IR Length : 22
IRL : GACAGAGTAAAAAAAAATAGGGGCAAATAAATTTAATTAAATTTCAAATT
IRR : GACAGAGTAAAAAAAATAGGGGCAGTCATTAAATACCACAACAAACTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATATTAGTT | TTTTTTTGTA | 0 | |
TTTTCGTGTA | TCTTTTCGTG | 0 | |
CAAATTACTG | GAATATAAAA | ATTAATAATG | 10 |
AACTAATATT | ACAAAAAAAG | 0 | |
CAAGATTTAC | AAAATTTAC | AAAAATCAAA | 9 |
CAAAAAATCA | TTTTCTTTTTT | 0 | |
TAGTTTAATA | TTATTAAGTTA | 0 |
DNA sequence
GACAGAGTAAAAAAAAATAGGGGCAAATAAATTTAATTAAATTTCAAATTAACAAAAAAGAGGAAACCAGTTACAATATAATCGCCAATCCTATTGAAAG
GTGGTTTCCTCTATGATTAGAATATCAAATTTTTTTTCACTTGTAAAGACTTTTTTTAAAAATATTTTTTCCTTCAGACTTCCGTTTGAGCAGCAGTTTA
AGCTGTTTGTCACAAAAGCTTTTGAAATGCTGTTTAGAGTTTATGTCAAAAGAGTTGATGATCACTTCTTTCATTCCAACGAAAGAAAAGATAAGTTTAA
AAGCAAAGGATTTGTTAAAAGAACTGTTACTACTGCCTTCGGGGATGTAACTTTTGAACGTCGAAAATATGTAAACAAAAAAACAGGCATTCACTATTAC
ATTGATGAAAAAATTGGACTTAAGCGGTATAGACGGCTTTCTGAGGAGATGATTTTTACTATACTTTTTGAATATCAGTATACTACAGCTTCATTTCTTG
CAAAAACTTACGGTGTTTCAAGGGCTACCGTGTATAATCTTGTCAATTCTTTTCAAATGCCGAAACTTGATATTGAAAGATTTGAAAGAGACGACAATTC
GCCAGTATATATGGAGATTGATGAAGATCATATGAAGTGTAGAAGAAGTAAAAATACATATATGAGGATGGTTGTAATACATCGTGGAATTGAGGAAATC
TGCACAGACAGGAACAAACTCATTGACAAGCACACAATAATGTTTCCTACATCCGTATCGCTTGAGGAAGTGTCGGAGTATGTACTTAACTATCTTGAAA
AAAGATACAATATGGACAAAAAGAAACTAATTGTGAACTCTGATGGAGGAATATGGATAGACAGCTTTGTAAGAGAACTTGGAATTTACAAGCCAATACA
CATTTATGACAAGTTCCATTTAGTAAAAGCCATAGCTGAAATTTCTAAAAGGGACAAGGAAATATCAAAAAATCTTTACAAATGGCTAAAGGGAGGCGAT
TTTAAAGAACTTGAAAACTTTTATGAAAATTTCAAGGAAAAGGAGAATGTAAGTCAGAGAAGAAAAGACTATACGAAGATGCTGTTTAACCAATATGAGA
AGATAAGAAGAATATATACGGAGGAAGACTACATAGGCTCAAGGACGGAAGCCCTAGTGTCCCACGAATGCTCAAGATTTCTATCAAGTAGGCCAAAAGC
ATTTTCAAGAAGAAAGATAAAGGCAAGAGCGTTATACCACACTTTCTTTGCAAACTATGGAAAAAACAGGGAAAAGGCGTATGAATTGTACTTTAGCGGC
AAAAGAACGAGTTCACTAGAAAAGGCAATAGAGATGGAATGCTTGACAGAAATTGTTAATGAAACAGGAAAAAGCACAAATCTGCCATATTTGAGAGGAG
GAGAATGTACGCTTAGGGAAGTTTTGAAAGAAGTATCACAAAGTAAAATATTTTAAAAAAAGCAGTCAAAAAAGTTTGTTGTGGTATTTAATGACTGCCC
CTATTTTTTTTACTCTGTC
GTGGTTTCCTCTATGATTAGAATATCAAATTTTTTTTCACTTGTAAAGACTTTTTTTAAAAATATTTTTTCCTTCAGACTTCCGTTTGAGCAGCAGTTTA
AGCTGTTTGTCACAAAAGCTTTTGAAATGCTGTTTAGAGTTTATGTCAAAAGAGTTGATGATCACTTCTTTCATTCCAACGAAAGAAAAGATAAGTTTAA
AAGCAAAGGATTTGTTAAAAGAACTGTTACTACTGCCTTCGGGGATGTAACTTTTGAACGTCGAAAATATGTAAACAAAAAAACAGGCATTCACTATTAC
ATTGATGAAAAAATTGGACTTAAGCGGTATAGACGGCTTTCTGAGGAGATGATTTTTACTATACTTTTTGAATATCAGTATACTACAGCTTCATTTCTTG
CAAAAACTTACGGTGTTTCAAGGGCTACCGTGTATAATCTTGTCAATTCTTTTCAAATGCCGAAACTTGATATTGAAAGATTTGAAAGAGACGACAATTC
GCCAGTATATATGGAGATTGATGAAGATCATATGAAGTGTAGAAGAAGTAAAAATACATATATGAGGATGGTTGTAATACATCGTGGAATTGAGGAAATC
TGCACAGACAGGAACAAACTCATTGACAAGCACACAATAATGTTTCCTACATCCGTATCGCTTGAGGAAGTGTCGGAGTATGTACTTAACTATCTTGAAA
AAAGATACAATATGGACAAAAAGAAACTAATTGTGAACTCTGATGGAGGAATATGGATAGACAGCTTTGTAAGAGAACTTGGAATTTACAAGCCAATACA
CATTTATGACAAGTTCCATTTAGTAAAAGCCATAGCTGAAATTTCTAAAAGGGACAAGGAAATATCAAAAAATCTTTACAAATGGCTAAAGGGAGGCGAT
TTTAAAGAACTTGAAAACTTTTATGAAAATTTCAAGGAAAAGGAGAATGTAAGTCAGAGAAGAAAAGACTATACGAAGATGCTGTTTAACCAATATGAGA
AGATAAGAAGAATATATACGGAGGAAGACTACATAGGCTCAAGGACGGAAGCCCTAGTGTCCCACGAATGCTCAAGATTTCTATCAAGTAGGCCAAAAGC
ATTTTCAAGAAGAAAGATAAAGGCAAGAGCGTTATACCACACTTTCTTTGCAAACTATGGAAAAAACAGGGAAAAGGCGTATGAATTGTACTTTAGCGGC
AAAAGAACGAGTTCACTAGAAAAGGCAATAGAGATGGAATGCTTGACAGAAATTGTTAATGAAACAGGAAAAAGCACAAATCTGCCATATTTGAGAGGAG
GAGAATGTACGCTTAGGGAAGTTTTGAAAGAAGTATCACAAAGTAAAATATTTTAAAAAAAGCAGTCAAAAAAGTTTGTTGTGGTATTTAATGACTGCCC
CTATTTTTTTTACTCTGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1344 bp | 447 aa | 113 | 1456 | + | No |
Chemistry : DDE
ORF sequence :
MIRISNFFSLVKTFFKNIFSFRLPFEQQFKLFVTKAFEMLFRVYVKRVDDHFFHSNERKDKFKSKGFVKRTVTTAFGDVTFERRKYVNKKTGIHYYIDEK
IGLKRYRRLSEEMIFTILFEYQYTTASFLAKTYGVSRATVYNLVNSFQMPKLDIERFERDDNSPVYMEIDEDHMKCRRSKNTYMRMVVIHRGIEEICTDR
NKLIDKHTIMFPTSVSLEEVSEYVLNYLEKRYNMDKKKLIVNSDGGIWIDSFVRELGIYKPIHIYDKFHLVKAIAEISKRDKEISKNLYKWLKGGDFKEL
ENFYENFKEKENVSQRRKDYTKMLFNQYEKIRRIYTEEDYIGSRTEALVSHECSRFLSSRPKAFSRRKIKARALYHTFFANYGKNREKAYELYFSGKRTS
SLEKAIEMECLTEIVNETGKSTNLPYLRGGECTLREVLKEVSQSKIF
IGLKRYRRLSEEMIFTILFEYQYTTASFLAKTYGVSRATVYNLVNSFQMPKLDIERFERDDNSPVYMEIDEDHMKCRRSKNTYMRMVVIHRGIEEICTDR
NKLIDKHTIMFPTSVSLEEVSEYVLNYLEKRYNMDKKKLIVNSDGGIWIDSFVRELGIYKPIHIYDKFHLVKAIAEISKRDKEISKNLYKWLKGGDFKEL
ENFYENFKEKENVSQRRKDYTKMLFNQYEKIRRIYTEEDYIGSRTEALVSHECSRFLSSRPKAFSRRKIKARALYHTFFANYGKNREKAYELYFSGKRTS
SLEKAIEMECLTEIVNETGKSTNLPYLRGGECTLREVLKEVSQSKIF
Blast result :
Comments
References