ISSsu2
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Streptococcus suis | Streptococcus suis 89/1591 |
DNA section
IS Length : 1503 bp
Ends
IR Length : 17
IRL : CAATGTCATTAAGTTAACTAACCTATCACGTTTTGTGGTGGGTTAGTTTT
IRR : CAATGTCATTAAGTTAAGCATTTAAGCAGCTAAAGAAACTATTCTCGTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTCCCAGCC | ACTAGAGTCG | 0 |
DNA sequence
CAATGTCATTAAGTTAACTAACCTATCACGTTTTGTGGTGGGTTAGTTTTTATGTTACACTAAAAATAAAAGGGGAAAAGTCATGCTAGATCAGATTAAA
GCTCATTTACTTGATAGTATTAACGACATCGTTTCTAGTGCCAATCAGTTTGTGCTTCATCCTGAAAAAGATTTTAGTCGGCAAAGTCAGCTAACTATGA
AAACCATGATTCAAGCCATACTGACCATGGGTGGTAATACCTTAGCCAAAGAGCTACTTGATTTAGATTTGCCTGTCTCTCAATCTGCCTTTGTTCAACG
ACGGTATCAGATTAAACACCAAGCTTTTAAAACACTTTTTAGGGATATTACTTCTAAAATTCCAATCTCTGATAATCTCCCTATCCTGGCTGTTGATGGC
AGTGATGTGATTCTACCAAGAAATCGTTTTGATAAAACGACCTCTTTTCAAACTGGACCACATCACACTCCTTACAATCTTATTCATATCAATGCTCTCT
ACACTCTTGAACAAGAGATATATCATGATTTACGGATCCAAGATAATCGAGAGGTTGATGAACGTGCAGCTTTTATTGACATGATGAAGACCTCTTCTTT
CAAACAAGCTCTGGTAATAATGGATAGGGGGTATGAATCCTACAATGTCATGGCTCACTGCCAAGAAAGAAATTGGTCCTATATTATTCGTATTCGTGAC
GGGAATCATTCTATGAAATCAGGATTTAACCTCCCTGATACCCCTTGTTTTGATAAGGCATTTGACCTAAACATCTGTCGCAAACAAACCAATGACATGA
AAGAACTGTATCGAGACTTCCCTAATCAGTATCATTTTTTACCTCATAATGCTTCCTTTGACTTTTTACTAAACTCTAGCCGAAAAAGCGACCCACTTCA
GTTTTACGAACTTCATTTTCGAATGGTGCGTCTCGAAATCAAGCCAGGTTTCTTTGAAACTTTGGTGACAAACACCGATTATTCTCCAGAAAAATTAAAA
GAGCTCTATGCCTACAGATGGGGCATAGAGACCAGTTTTCGTGACCTAAAATACAGTATCGGTCTGACTCATTTTCATGCAAAAAAGAAGGAAGGGATTC
TCCAAGAAATCTACGCTCGCTTTATCAATTTTAATGTTTGTAAATGGCTAACCTCACACGTTGCTATTAAAACATCAAAGTTAAAACAGACTTATAAAAT
TTGTTTTTCAGACGCTGTTTATGCCTGTCGAAAATTTCTTAGAAACAAACTCACTTCCTTCCAATTAGAAACCTACATTGCCAAGCATTTATCCATCATC
CGACCCAATCGAACGTTCCAAAGAAAGATAAAAAGCAAGGCACCTGTAAGCTTCACTTATAGAGTAACATAATAGTTGAAAAATAGGGATAAAAAACCTC
CTTTTTGTGCGCCCTAAATACAAAAACTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACA
TTG
GCTCATTTACTTGATAGTATTAACGACATCGTTTCTAGTGCCAATCAGTTTGTGCTTCATCCTGAAAAAGATTTTAGTCGGCAAAGTCAGCTAACTATGA
AAACCATGATTCAAGCCATACTGACCATGGGTGGTAATACCTTAGCCAAAGAGCTACTTGATTTAGATTTGCCTGTCTCTCAATCTGCCTTTGTTCAACG
ACGGTATCAGATTAAACACCAAGCTTTTAAAACACTTTTTAGGGATATTACTTCTAAAATTCCAATCTCTGATAATCTCCCTATCCTGGCTGTTGATGGC
AGTGATGTGATTCTACCAAGAAATCGTTTTGATAAAACGACCTCTTTTCAAACTGGACCACATCACACTCCTTACAATCTTATTCATATCAATGCTCTCT
ACACTCTTGAACAAGAGATATATCATGATTTACGGATCCAAGATAATCGAGAGGTTGATGAACGTGCAGCTTTTATTGACATGATGAAGACCTCTTCTTT
CAAACAAGCTCTGGTAATAATGGATAGGGGGTATGAATCCTACAATGTCATGGCTCACTGCCAAGAAAGAAATTGGTCCTATATTATTCGTATTCGTGAC
GGGAATCATTCTATGAAATCAGGATTTAACCTCCCTGATACCCCTTGTTTTGATAAGGCATTTGACCTAAACATCTGTCGCAAACAAACCAATGACATGA
AAGAACTGTATCGAGACTTCCCTAATCAGTATCATTTTTTACCTCATAATGCTTCCTTTGACTTTTTACTAAACTCTAGCCGAAAAAGCGACCCACTTCA
GTTTTACGAACTTCATTTTCGAATGGTGCGTCTCGAAATCAAGCCAGGTTTCTTTGAAACTTTGGTGACAAACACCGATTATTCTCCAGAAAAATTAAAA
GAGCTCTATGCCTACAGATGGGGCATAGAGACCAGTTTTCGTGACCTAAAATACAGTATCGGTCTGACTCATTTTCATGCAAAAAAGAAGGAAGGGATTC
TCCAAGAAATCTACGCTCGCTTTATCAATTTTAATGTTTGTAAATGGCTAACCTCACACGTTGCTATTAAAACATCAAAGTTAAAACAGACTTATAAAAT
TTGTTTTTCAGACGCTGTTTATGCCTGTCGAAAATTTCTTAGAAACAAACTCACTTCCTTCCAATTAGAAACCTACATTGCCAAGCATTTATCCATCATC
CGACCCAATCGAACGTTCCAAAGAAAGATAAAAAGCAAGGCACCTGTAAGCTTCACTTATAGAGTAACATAATAGTTGAAAAATAGGGATAAAAAACCTC
CTTTTTGTGCGCCCTAAATACAAAAACTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACA
TTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 429 aa | 83 | 1369 | + | No |
Chemistry : DDE
ORF sequence :
MLDQIKAHLLDSINDIVSSANQFVLHPEKDFSRQSQLTMKTMIQAILTMGGNTLAKELLDLDLPVSQSAFVQRRYQIKHQAFKTLFRDITSKIPISDNLP
ILAVDGSDVILPRNRFDKTTSFQTGPHHTPYNLIHINALYTLEQEIYHDLRIQDNREVDERAAFIDMMKTSSFKQALVIMDRGYESYNVMAHCQERNWSY
IIRIRDGNHSMKSGFNLPDTPCFDKAFDLNICRKQTNDMKELYRDFPNQYHFLPHNASFDFLLNSSRKSDPLQFYELHFRMVRLEIKPGFFETLVTNTDY
SPEKLKELYAYRWGIETSFRDLKYSIGLTHFHAKKKEGILQEIYARFINFNVCKWLTSHVAIKTSKLKQTYKICFSDAVYACRKFLRNKLTSFQLETYIA
KHLSIIRPNRTFQRKIKSKAPVSFTYRVT
ILAVDGSDVILPRNRFDKTTSFQTGPHHTPYNLIHINALYTLEQEIYHDLRIQDNREVDERAAFIDMMKTSSFKQALVIMDRGYESYNVMAHCQERNWSY
IIRIRDGNHSMKSGFNLPDTPCFDKAFDLNICRKQTNDMKELYRDFPNQYHFLPHNASFDFLLNSSRKSDPLQFYELHFRMVRLEIKPGFFETLVTNTDY
SPEKLKELYAYRWGIETSFRDLKYSIGLTHFHAKKKEGILQEIYARFINFNVCKWLTSHVAIKTSKLKQTYKICFSDAVYACRKFLRNKLTSFQLETYIA
KHLSIIRPNRTFQRKIKSKAPVSFTYRVT
Blast result :
Comments
ISSsu2 is 57% aa similar to IS1675. ISSsu2 was found by screening completely sequenced genomes for sequences homologous to the IS4 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-75-D(N3)-134-E(C1). Genome sequencing of Streptococcus suis 89/1591 is currently in progress. Accession number: NZ_AAFA00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2006) Unpublished
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2006) Unpublished