ISFac6
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ferroplasma acidarmanus | Ferroplasma acidarmanus Fer1 |
DNA section
IS Length : 1511 bp
Ends
IR Length : 16/18
IRL : CCTTAACTCCACAAATTTATAGGGAATACATCCATTATTATTTTTAATTC
IRR : CCTTAACTCCCCAATTTTTTAGGGAATATATTTGTACCTAATTGTTCATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTTTTTTAT | TTTATAA | TATTATTTAG | 7 |
DNA sequence
CCTTAACTCCACAAATTTATAGGGAATACATCCATTATTATTTTTAATTCCCATGTCTTTACAGTTATAATAGCAATGCAAACATTAATATTATATATTC
CCTATATAGGGTATATGGAAGAATGGGTAAAGGATGTACTGCAAGAAGAAAAAAGGAAAAGGAAGATTCCACTTGAGGTGAAGAGGCTGAACGGAAATTA
TTATTTATACCATTCAACAACAAGATATGATAAGGAAAAGCATGGTGCAAGGAAAGTATCTGATTACATTGGAAGAATTACAGAAAATGGCATAGTAAGC
AATGACAAATCCCGGTCTGTGTATGAATATGGAAATTCAGAATTAATATACTCTGTATCAAAGGATATAATTAAATTATTGAAGAAACACTTCCCTGATA
CATGGGAATCCATATACGCAATGTCTGTGGTAAGGCTAATAAGCTATACACCGATGAAAAGCATTAAGGAAAGATGGGATAAACTGTACATGTCCAGATA
TATCAATGCGCATGTATCGCCCAATACATTGACAGACCTTCTTATTGAAACAGGTTCAGATATCAGCAGCCAGTATGATCTATTCAATGATCTAATGCAC
GATTCCATGAAGCTTGCATTTGACCTATCATCAATATTCTCAAGGTCAGAGAATATAAATATGGCAGAGAAGGGGCATAACCATGAGCACGAGTATATAC
CGCAGATCAATATTGCAATGGTATTTGACTTAGATTACTATAAGCCTGTTTTTCTTAAATCATTGGACGGTTCTGTAAGGGATATAAAATCTTTAAGGAA
GGTACTGGAAGAGATTAATTTTAATGGAGTATTAGTAATGGACAGAGGGTTTGCATCATATTCCTTAGCGGATGAAATAAATAATAAATTCATAATGCCA
TTGAGGAGAAATAATAATATTATTGATTATAGCATTGAATTCAAATCAAGCTTCATGTACAGGGACAGGGGAATACTGTGTACATCATATAAATATGGAA
AATATACTATATACATATTCCAGGACCAGCTGTTAATGTCAGAGGAGGCAAATACATTCATATCACTGATAGCAGACAATAAGAAGAGCCAGGATGATTA
TAATAGTGCATCTAAAGTATTCGGCAAGATTGCAATACTCTCAAATATTGATGACAAACCTGAAAATATATACCTAATGTATAAGCAGAGGGAAGAGATA
GAACAGTCATTTGATGCTATGAAGAATGAATTGGAAAATGACAAATCATACTTAAGCAATGATGATTCCATAAGGGGTTATTTCTTTATTTCATTTGTAT
CATTATACATATATTACTCAATATTTGTTCTCATAAGGGCCGCAGGATTGACTGATAAATTATCTGTAAAGGATGCATTATTAAAATATTCAAGGGTTTA
CAGGATTATACACAACAGTAAAGAAATTATTTCAGAGGTTCCTGCATCATCCGAAAGGATAGATGAACAATTAGGTACAAATATATTCCCTAAAAAATTG
GGGAGTTAAGG
CCTATATAGGGTATATGGAAGAATGGGTAAAGGATGTACTGCAAGAAGAAAAAAGGAAAAGGAAGATTCCACTTGAGGTGAAGAGGCTGAACGGAAATTA
TTATTTATACCATTCAACAACAAGATATGATAAGGAAAAGCATGGTGCAAGGAAAGTATCTGATTACATTGGAAGAATTACAGAAAATGGCATAGTAAGC
AATGACAAATCCCGGTCTGTGTATGAATATGGAAATTCAGAATTAATATACTCTGTATCAAAGGATATAATTAAATTATTGAAGAAACACTTCCCTGATA
CATGGGAATCCATATACGCAATGTCTGTGGTAAGGCTAATAAGCTATACACCGATGAAAAGCATTAAGGAAAGATGGGATAAACTGTACATGTCCAGATA
TATCAATGCGCATGTATCGCCCAATACATTGACAGACCTTCTTATTGAAACAGGTTCAGATATCAGCAGCCAGTATGATCTATTCAATGATCTAATGCAC
GATTCCATGAAGCTTGCATTTGACCTATCATCAATATTCTCAAGGTCAGAGAATATAAATATGGCAGAGAAGGGGCATAACCATGAGCACGAGTATATAC
CGCAGATCAATATTGCAATGGTATTTGACTTAGATTACTATAAGCCTGTTTTTCTTAAATCATTGGACGGTTCTGTAAGGGATATAAAATCTTTAAGGAA
GGTACTGGAAGAGATTAATTTTAATGGAGTATTAGTAATGGACAGAGGGTTTGCATCATATTCCTTAGCGGATGAAATAAATAATAAATTCATAATGCCA
TTGAGGAGAAATAATAATATTATTGATTATAGCATTGAATTCAAATCAAGCTTCATGTACAGGGACAGGGGAATACTGTGTACATCATATAAATATGGAA
AATATACTATATACATATTCCAGGACCAGCTGTTAATGTCAGAGGAGGCAAATACATTCATATCACTGATAGCAGACAATAAGAAGAGCCAGGATGATTA
TAATAGTGCATCTAAAGTATTCGGCAAGATTGCAATACTCTCAAATATTGATGACAAACCTGAAAATATATACCTAATGTATAAGCAGAGGGAAGAGATA
GAACAGTCATTTGATGCTATGAAGAATGAATTGGAAAATGACAAATCATACTTAAGCAATGATGATTCCATAAGGGGTTATTTCTTTATTTCATTTGTAT
CATTATACATATATTACTCAATATTTGTTCTCATAAGGGCCGCAGGATTGACTGATAAATTATCTGTAAAGGATGCATTATTAAAATATTCAAGGGTTTA
CAGGATTATACACAACAGTAAAGAAATTATTTCAGAGGTTCCTGCATCATCCGAAAGGATAGATGAACAATTAGGTACAAATATATTCCCTAAAAAATTG
GGGAGTTAAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1392 bp | 464 aa | 115 | 1506 | + | No |
Chemistry : DDE
ORF sequence :
MEEWVKDVLQEEKRKRKIPLEVKRLNGNYYLYHSTTRYDKEKHGARKVSDYIGRITENGIVSNDKSRSVYEYGNSELIYSVSKDIIKLLKKHFPDTWESI
YAMSVVRLISYTPMKSIKERWDKLYMSRYINAHVSPNTLTDLLIETGSDISSQYDLFNDLMHDSMKLAFDLSSIFSRSENINMAEKGHNHEHEYIPQINI
AMVFDLDYYKPVFLKSLDGSVRDIKSLRKVLEEINFNGVLVMDRGFASYSLADEINNKFIMPLRRNNNIIDYSIEFKSSFMYRDRGILCTSYKYGKYTIY
IFQDQLLMSEEANTFISLIADNKKSQDDYNSASKVFGKIAILSNIDDKPENIYLMYKQREEIEQSFDAMKNELENDKSYLSNDDSIRGYFFISFVSLYIY
YSIFVLIRAAGLTDKLSVKDALLKYSRVYRIIHNSKEIISEVPASSERIDEQLGTNIFPKKLGS
YAMSVVRLISYTPMKSIKERWDKLYMSRYINAHVSPNTLTDLLIETGSDISSQYDLFNDLMHDSMKLAFDLSSIFSRSENINMAEKGHNHEHEYIPQINI
AMVFDLDYYKPVFLKSLDGSVRDIKSLRKVLEEINFNGVLVMDRGFASYSLADEINNKFIMPLRRNNNIIDYSIEFKSSFMYRDRGILCTSYKYGKYTIY
IFQDQLLMSEEANTFISLIADNKKSQDDYNSASKVFGKIAILSNIDDKPENIYLMYKQREEIEQSFDAMKNELENDKSYLSNDDSIRGYFFISFVSLYIY
YSIFVLIRAAGLTDKLSVKDALLKYSRVYRIIHNSKEIISEVPASSERIDEQLGTNIFPKKLGS
Blast result :
Comments
ISFac6 is 57% aa similar to ISTvo4. ISFac6 was found by screening completely sequenced genomes for sequences homologous to the ISMmy1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-72-D(N3)-119-E(C1). The chromosome sequencing of Ferroplasma acidarmanus Fer1 is currently in progress. Accession number : NZ_AABC00000000.
References
1]De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2006)Unpublished
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2006)Unpublished