ISFac6

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ferroplasma acidarmanus
Ferroplasma acidarmanus Fer1
DNA section
IS Length : 1511 bp

Ends


IR Length : 16/18

IRL : CCTTAACTCCACAAATTTATAGGGAATACATCCATTATTATTTTTAATTC
IRR : CCTTAACTCCCCAATTTTTTAGGGAATATATTTGTACCTAATTGTTCATC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTTTTTATTTTATAATATTATTTAG7

DNA sequence

CCTTAACTCCACAAATTTATAGGGAATACATCCATTATTATTTTTAATTCCCATGTCTTTACAGTTATAATAGCAATGCAAACATTAATATTATATATTC
CCTATATAGGGTATATGGAAGAATGGGTAAAGGATGTACTGCAAGAAGAAAAAAGGAAAAGGAAGATTCCACTTGAGGTGAAGAGGCTGAACGGAAATTA
TTATTTATACCATTCAACAACAAGATATGATAAGGAAAAGCATGGTGCAAGGAAAGTATCTGATTACATTGGAAGAATTACAGAAAATGGCATAGTAAGC
AATGACAAATCCCGGTCTGTGTATGAATATGGAAATTCAGAATTAATATACTCTGTATCAAAGGATATAATTAAATTATTGAAGAAACACTTCCCTGATA
CATGGGAATCCATATACGCAATGTCTGTGGTAAGGCTAATAAGCTATACACCGATGAAAAGCATTAAGGAAAGATGGGATAAACTGTACATGTCCAGATA
TATCAATGCGCATGTATCGCCCAATACATTGACAGACCTTCTTATTGAAACAGGTTCAGATATCAGCAGCCAGTATGATCTATTCAATGATCTAATGCAC
GATTCCATGAAGCTTGCATTTGACCTATCATCAATATTCTCAAGGTCAGAGAATATAAATATGGCAGAGAAGGGGCATAACCATGAGCACGAGTATATAC
CGCAGATCAATATTGCAATGGTATTTGACTTAGATTACTATAAGCCTGTTTTTCTTAAATCATTGGACGGTTCTGTAAGGGATATAAAATCTTTAAGGAA
GGTACTGGAAGAGATTAATTTTAATGGAGTATTAGTAATGGACAGAGGGTTTGCATCATATTCCTTAGCGGATGAAATAAATAATAAATTCATAATGCCA
TTGAGGAGAAATAATAATATTATTGATTATAGCATTGAATTCAAATCAAGCTTCATGTACAGGGACAGGGGAATACTGTGTACATCATATAAATATGGAA
AATATACTATATACATATTCCAGGACCAGCTGTTAATGTCAGAGGAGGCAAATACATTCATATCACTGATAGCAGACAATAAGAAGAGCCAGGATGATTA
TAATAGTGCATCTAAAGTATTCGGCAAGATTGCAATACTCTCAAATATTGATGACAAACCTGAAAATATATACCTAATGTATAAGCAGAGGGAAGAGATA
GAACAGTCATTTGATGCTATGAAGAATGAATTGGAAAATGACAAATCATACTTAAGCAATGATGATTCCATAAGGGGTTATTTCTTTATTTCATTTGTAT
CATTATACATATATTACTCAATATTTGTTCTCATAAGGGCCGCAGGATTGACTGATAAATTATCTGTAAAGGATGCATTATTAAAATATTCAAGGGTTTA
CAGGATTATACACAACAGTAAAGAAATTATTTCAGAGGTTCCTGCATCATCCGAAAGGATAGATGAACAATTAGGTACAAATATATTCCCTAAAAAATTG
GGGAGTTAAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1392 bp464 aa1151506+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEEWVKDVLQEEKRKRKIPLEVKRLNGNYYLYHSTTRYDKEKHGARKVSDYIGRITENGIVSNDKSRSVYEYGNSELIYSVSKDIIKLLKKHFPDTWESI
YAMSVVRLISYTPMKSIKERWDKLYMSRYINAHVSPNTLTDLLIETGSDISSQYDLFNDLMHDSMKLAFDLSSIFSRSENINMAEKGHNHEHEYIPQINI
AMVFDLDYYKPVFLKSLDGSVRDIKSLRKVLEEINFNGVLVMDRGFASYSLADEINNKFIMPLRRNNNIIDYSIEFKSSFMYRDRGILCTSYKYGKYTIY
IFQDQLLMSEEANTFISLIADNKKSQDDYNSASKVFGKIAILSNIDDKPENIYLMYKQREEIEQSFDAMKNELENDKSYLSNDDSIRGYFFISFVSLYIY
YSIFVLIRAAGLTDKLSVKDALLKYSRVYRIIHNSKEIISEVPASSERIDEQLGTNIFPKKLGS

 

Blast result :
Comments
ISFac6 is 57% aa similar to ISTvo4. ISFac6 was found by screening completely sequenced genomes for sequences homologous to the ISMmy1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-72-D(N3)-119-E(C1). The chromosome sequencing of Ferroplasma acidarmanus Fer1 is currently in progress. Accession number : NZ_AABC00000000.
References
1]De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2006)Unpublished