ISNpu6
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Nostoc punctiforme | Nostoc punctiforme PCC 73102 |
DNA section
IS Length : 1457 bp
Ends
IR Length : 25
IRL : TTATCCCTCTTCTGTCACTTTCCGGGTATTCTGAATAAAAGAATAAAAAA
IRR : TTATCCCTCTTCTGTCACTTTCCGGAATAAGCAAGTAGTAAAGAAGCTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGGTAAGG | GTAAGTCGGT | 0 |
DNA sequence
TTATCCCTCTTCTGTCACTTTCCGGGTATTCTGAATAAAAGAATAAAAAAAGAAAACCTTGAAAGGTAAGTGGGGCAATGGATGTAGAGTTACAAATACT
GAAACATTTGGCAAGAGATGCCCACCCAACAGTTGCCATCATAGATGAATATTGTGCAGATTATAAAGACCTATTTAAGGAAGTAAGAAATTATGAGTGT
TTCAAATATTTACACTTAGGAATCATATCAACAATAAAAAGGAAATCATTACCAGAGATAGCGAAGGTAGTAAGTATAAACTCAGCCCAATCATTACATC
ATTTCCTGGCAAATTCAGATTGGTCAGTAGATGAATTAAAACAACGAAGATTAAATAAACTTAAGCAAGTATTGAATGGTCAGGCGATTACAGTAGTAAT
AGATGAAACTGGAGATAGAAAAAAAGGTAAAAAGACTGACTATGTGGCGAGACAATACTTAGGAAGTGTGGGAAAAATTGATAATGGAATAGTTTCAGTC
AATGCTTATGGAGTTTACTCTAATATAACCTTTCCATTAATGGTAAAAGTGTTTAAACCAAAAGGGACGCTGAAAGAGGGAGATAAATATAAAACTAAAA
TAGAGTTAGCGTCAGAAATGATTACAGAGTTAATGGAAGAGGGCTTTCAGATTGAACTGGTACTGGCAGATAGTTTATATGGTGAAAGTAGCCAATTTAT
TAGAAAACTGGATGAATATAACTTAGCCTATGTGGTAGCAATTAGAAGTAATCATGGAGTCTGGTTGCCAGCAGGGCAAAGTGTTAGAGCAAACAATTGG
TGTAAATTTGAGAGAACATTTAGTAATCAAAAATCAGAGACTAGATACATTAGAGAAATAATTTATGGTAAAAAAAGAACCATAACTTACTGGGAAATAA
CTACTGACCCAGAAACCATGCCAGAAAATTCTACCTCCTTCGTGATGACGAATCTTCAAGGGAATTTGAAAAAGACTTTAGGCGACTTATATGGATTAAG
AACCTGGGTTGAATATGGTTTTCGACAGTGTAAACAAGAACTAGGCTGGACAGATTATCGTTTCACAAATTTTCAACATATTGAGAGGTGGTGGGAGATT
ATTTTTTGCGTTTACACGATGATTAGTTTGAATTCTCCAGCCTTGTTAGCCTTAAATCAATCTCGCCAAATTGAGGCTGAGGGGCAAAGAACTAGTCATA
TTGACTTTTCTAATCATCAACAATGGAATCATGAATCTGGATGGAAGAATGTTTTAAATAATCTGCGTCTAATCGTCCAACCACTCTTACTATTTTGGTT
GATTTATCCTTGGCTCGATATTTTCCCTAATTCACAGTTATTACTGGGATTCAATCATTTAATTGCAGCCATGAATCAATTTAAACCCTGTTATGCTTCT
GGATGATTTAGCTTCTTTACTACTTGCTTATTCCGGAAAGTGACAGAAGAGGGATAA
GAAACATTTGGCAAGAGATGCCCACCCAACAGTTGCCATCATAGATGAATATTGTGCAGATTATAAAGACCTATTTAAGGAAGTAAGAAATTATGAGTGT
TTCAAATATTTACACTTAGGAATCATATCAACAATAAAAAGGAAATCATTACCAGAGATAGCGAAGGTAGTAAGTATAAACTCAGCCCAATCATTACATC
ATTTCCTGGCAAATTCAGATTGGTCAGTAGATGAATTAAAACAACGAAGATTAAATAAACTTAAGCAAGTATTGAATGGTCAGGCGATTACAGTAGTAAT
AGATGAAACTGGAGATAGAAAAAAAGGTAAAAAGACTGACTATGTGGCGAGACAATACTTAGGAAGTGTGGGAAAAATTGATAATGGAATAGTTTCAGTC
AATGCTTATGGAGTTTACTCTAATATAACCTTTCCATTAATGGTAAAAGTGTTTAAACCAAAAGGGACGCTGAAAGAGGGAGATAAATATAAAACTAAAA
TAGAGTTAGCGTCAGAAATGATTACAGAGTTAATGGAAGAGGGCTTTCAGATTGAACTGGTACTGGCAGATAGTTTATATGGTGAAAGTAGCCAATTTAT
TAGAAAACTGGATGAATATAACTTAGCCTATGTGGTAGCAATTAGAAGTAATCATGGAGTCTGGTTGCCAGCAGGGCAAAGTGTTAGAGCAAACAATTGG
TGTAAATTTGAGAGAACATTTAGTAATCAAAAATCAGAGACTAGATACATTAGAGAAATAATTTATGGTAAAAAAAGAACCATAACTTACTGGGAAATAA
CTACTGACCCAGAAACCATGCCAGAAAATTCTACCTCCTTCGTGATGACGAATCTTCAAGGGAATTTGAAAAAGACTTTAGGCGACTTATATGGATTAAG
AACCTGGGTTGAATATGGTTTTCGACAGTGTAAACAAGAACTAGGCTGGACAGATTATCGTTTCACAAATTTTCAACATATTGAGAGGTGGTGGGAGATT
ATTTTTTGCGTTTACACGATGATTAGTTTGAATTCTCCAGCCTTGTTAGCCTTAAATCAATCTCGCCAAATTGAGGCTGAGGGGCAAAGAACTAGTCATA
TTGACTTTTCTAATCATCAACAATGGAATCATGAATCTGGATGGAAGAATGTTTTAAATAATCTGCGTCTAATCGTCCAACCACTCTTACTATTTTGGTT
GATTTATCCTTGGCTCGATATTTTCCCTAATTCACAGTTATTACTGGGATTCAATCATTTAATTGCAGCCATGAATCAATTTAAACCCTGTTATGCTTCT
GGATGATTTAGCTTCTTTACTACTTGCTTATTCCGGAAAGTGACAGAAGAGGGATAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1326 bp | 442 aa | 78 | 1403 | + | No |
Chemistry : DDE
ORF sequence :
MDVELQILKHLARDAHPTVAIIDEYCADYKDLFKEVRNYECFKYLHLGIISTIKRKSLPEIAKVVSINSAQSLHHFLANSDWSVDELKQRRLNKLKQVLN
GQAITVVIDETGDRKKGKKTDYVARQYLGSVGKIDNGIVSVNAYGVYSNITFPLMVKVFKPKGTLKEGDKYKTKIELASEMITELMEEGFQIELVLADSL
YGESSQFIRKLDEYNLAYVVAIRSNHGVWLPAGQSVRANNWCKFERTFSNQKSETRYIREIIYGKKRTITYWEITTDPETMPENSTSFVMTNLQGNLKKT
LGDLYGLRTWVEYGFRQCKQELGWTDYRFTNFQHIERWWEIIFCVYTMISLNSPALLALNQSRQIEAEGQRTSHIDFSNHQQWNHESGWKNVLNNLRLIV
QPLLLFWLIYPWLDIFPNSQLLLGFNHLIAAMNQFKPCYASG
GQAITVVIDETGDRKKGKKTDYVARQYLGSVGKIDNGIVSVNAYGVYSNITFPLMVKVFKPKGTLKEGDKYKTKIELASEMITELMEEGFQIELVLADSL
YGESSQFIRKLDEYNLAYVVAIRSNHGVWLPAGQSVRANNWCKFERTFSNQKSETRYIREIIYGKKRTITYWEITTDPETMPENSTSFVMTNLQGNLKKT
LGDLYGLRTWVEYGFRQCKQELGWTDYRFTNFQHIERWWEIIFCVYTMISLNSPALLALNQSRQIEAEGQRTSHIDFSNHQQWNHESGWKNVLNNLRLIV
QPLLLFWLIYPWLDIFPNSQLLLGFNHLIAAMNQFKPCYASG
Blast result :
Comments
ISNpu6 is 73% aa similar to IS701. ISNpu6 was found by screening completely sequenced genomes for sequences homologous to the IS701 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-88-D(N3)-113-E(C1). The chromosome sequencing of Nostoc punctiforme PCC 73102 is currently in progress. Accesion number: NZ_AAAY00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] NCBI Microbial Genomes Annotation Project (2006) Unpublished
2] NCBI Microbial Genomes Annotation Project (2006) Unpublished