ISDge1

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008025 ND Deinococcus geothermalis
Deinococcus geothermalis DSM 11300
DNA section
IS Length : 1394 bp

Ends


IR Length : 17

IRL : CAGCCGCAGTTAGGGGGAGTAGACTGGGAAATGGCACGTCCCAGCGCAGC
IRR : CAGCCGCAGTTAGGGGGCGGAAAGCCAGCGTTGTTGACGGCGCACGTGGC

Insertion site


Left flankDirect repeatRight flankDR Length
GGACCGGCTCTAGTACTAAGGGGCTTCC8

DNA sequence

CAGCCGCAGTTAGGGGGAGTAGACTGGGAAATGGCACGTCCCAGCGCAGCTCCTCTCCCGCGTCGATGGTTGACAGACCTCGACAAGCTTCACCAACGGA
TTGCTCCGCGTTTCGCCCGTAGTGAACAGCGCCAGCGTGCCCTGGCCTACTTGCAAGCCCTGTTGAGTCCGGTCGAACGCAAGAATGGCTGGCAGGTCGC
TGAGCAGATCGGGGAACACACCCCGAACGGGGTACAACGCCTGCTGTCCACCGCACAGTGGGATGCGCAGGTCGTTCGTGACGACCTGCGCCAGTACGTA
CTGGACCATCTCCAAACGCCTGAGGCAGTGCTGGTCCTTGACGAGACAGGCTTCCTCAAGAAAGGCACGAAATCCGCCGGTGTCCAGCGGCAGTACAGCG
GGACCGCTGGTCGCATCGAGAATTGCCAGATCGGGGTCTTCTTGGCCTACGCGACACCGAGTGGCACCGCCCTGATCGACCGGGAACTCTTTTTGCCCAA
GACCTGGATCGATGATCCGGCCCGCCGTGAAGCGGCCAAAATTCCCGATACCGTCCGTGCTGTCACGAAACCACAACTGGCGCTCGCCATGCTGGAACGG
GCGTTCGATGGCGGCGTACACGCCGCCTGGGTCACGGGTGATGCGGTGTACTCGGCCTACAAGGTCCGTGCCTTTCTCGAACAGCGCCAGCAACCCTACG
TTCTGGCGGTTGCTTCTAACTTCCACGTGTGGGCCTGGCAGGCTGGCGGCCCTGCACAAGTTCATGTGGCCGACATTGCTGGGCAGTTCCAGCCCCACCA
CTGGCAGACGTTGAGTGCAGGCTCAGGGAGTAAGGGGGAGCGCCTCTTCGACTGGGCATGGGTGAGTGTGACCGAGTTGATGGGTCCCGCCGTCGCGGCA
GGACTCGGGCCGATCCTGCCCGCCGGGTTCGAGCGCTGGGTCCTGGCCCGTCGCTCGCTCAAAGACCCCTCTGATCTCGCCTACTACATCGCGTTTGCAC
CCTCGAGCACGACCTTGTCAGAGGTCGTGCGAGCGGCGGGATCGCGCTGGGCGATTGAAGTCGCGTTTGAAATGGCCAAGGGTGAAGTGGGCCTTGATCA
GTACGAGGTCCGTTCGTGGGTCGGGTGGTATCGGCATATCACCTTGGCCATGCTGGCCCACGCCTTCCTGACCGTGGTCGCTGCCCGTGAGAAAAAGGGG
GGGCGGCCGACGAGGATCTGATCCCGCTGACCGTGCCCGAGGTACGTCGCCTCTTGCTCCTGGTCCTGCCGCAGAACAAGACCAAGGCGCTCGTCTGGAG
GTGGTCGTGGTGGCGTCGCCACCACCAGGCGCGCGCCAGGCGAAGCCACGTGCGCCGTCAACAACGCTGGCTTTCCGCCCCCTAACTGCGGCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1188 bp396 aa311218+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARPSAAPLPRRWLTDLDKLHQRIAPRFARSEQRQRALAYLQALLSPVERKNGWQVAEQIGEHTPNGVQRLLSTAQWDAQVVRDDLRQYVLDHLQTPEAV
LVLDETGFLKKGTKSAGVQRQYSGTAGRIENCQIGVFLAYATPSGTALIDRELFLPKTWIDDPARREAAKIPDTVRAVTKPQLALAMLERAFDGGVHAAW
VTGDAVYSAYKVRAFLEQRQQPYVLAVASNFHVWAWQAGGPAQVHVADIAGQFQPHHWQTLSAGSGSKGERLFDWAWVSVTELMGPAVAAGLGPILPAGF
ERWVLARRSLKDPSDLAYYIAFAPSSTTLSEVVRAAGSRWAIEVAFEMAKGEVGLDQYEVRSWVGWYRHITLAMLAHAFLTVVAAREKKGGRPTRI

 

Blast result :
Comments
ISDge1 is 56% aa similar to IS1452. ISDge1 was found by screening completely sequenced genomes for sequences homologous to the IS701 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-99-D(N3)-138-E(C1). The copy number in Deinococcus geothermalis DSM 11300 is 1.
References
1]De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P.(2006)Unpublished