ISPpr3
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006371 | ND | Photobacterium profundum | Photobacterium profundum SS9 |
DNA section
IS Length : 1502 bp
Ends
IR Length : 17/21
IRL : CTGTCTCTTATACACAAATCCCCAGTTTTTAAACTGGGGATTTTTTTTGA
IRR : CTGTCTCTTGATCACAAGTCCAAGCATTCAAGAGATTGTGCTAAATGATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCAAAGGCA | CCATACGGT | GCCCTTTTAT | 9 |
GAAAAAAGGA | GCCGACGGG | CTCCTTTTTT | 9 |
TAAAAAGGCT | TTTATTAAA | AGCCTTTTTA | 9 |
ACTCGATGTA | ACTAAAGGC | ACCCTTTATT | 9 |
TCAAAAGCCT | CTTCCTATG | TACCTTTCCA | 9 |
AGAATGGTA | TTATTACGGC | AGGCTTTGCT | 10 |
DNA sequence
CTGTCTCTTATACACAAATCCCCAGTTTTTAAACTGGGGATTTTTTTTGAACTTCATTTCAATATCACGATCTGATCCTTTGTTATTAAACTAAGGACGG
CCATTATGTATATTTCTACTCCTCAAGATTGGGCTACTTCTCTTTTTGGTCAGGCTAATTTAGGCGATCCAAGGCGAACAAAACGATTAGTTAAAGTGGC
GACTAATCTTGCATTACACACAGGGAAATCTTTAGTGAAATCAAGCCAACAGCCAGCAGAGATTGAAGGCGCTTATCGCTTTATTCGCAACGAATCTATT
AATGCTAATGATATTGCCGAAGCCGGATTTCAAACAACAACACAAGAGGCTAACCGCCATGATTTATTGTTAGCGCTTGAAGATACAACGTCTCTTAACT
ATACCCATCGCGCTGTAAAAGAGCAGCTTGGTCATGTTAATGGTGGAAACAGAACTCGCGGTATTTATGCTCATTCCATCTTGCTTTTCGCACCAACTAA
CCACCAAGTGGTTGGGTTAATTGAACAAATACGGTGGACGCGAGATATAAAAACAAGAGGAAAAGGTGCACGTCATGCACAAACACCCTATAAAGAAAAA
GAAAGTTATAAATGGGAACAGGCTTCGATAAATATGGCATCCCGCCTTGGTGAGACTATGCAACAGGTTATATCTGTATGTGATCGTGAAGCTGATATTT
ATGAATATTTAACGTATAAAACTCAAGAAAACCAACGTTTTGTTGTTCGTTCAATGCAAAGCCGTTGTATCGAAGAAAGTGATAATAAGTTGTACGCTTT
TTCAGACCAATTACAACCTGCAGGCAATCGAAAAATCTATATCCCACAAAAAGGAGGGCGGAAAGCGCGAGAGGTTATTCTTGATATCCGATTCTCAACC
ATTACTCTCAAAGTGCCTGCCAATAAGAAAGGAAAAAGTATTCCACTATATTATGTCGGGTGCGTAGAGCAAGGTGCAGGTAACAACGGATTAAGCTGGC
ACTTGATGACGTCAGAGCCTGTTACGAATAGAGAAGAAGCACTGAAAATCGTTCAGTATTATGAGCAACGTTGGTTGATTGAGGACTATCACAAAGCTTG
GAAAAGTGGTGGAACCCAAGTTGAGTCATTACGCATGCAAAGCTATACCAATATTGAACGCATGGCCACAATACTCGCTTTCCTTGCTACACGAATCTTA
CAACTGAAATTTATGGGGCAGAATATAAAAGCTGATGAAGAAAGTTGTGAGTCAGTCTTATCGCCTATTGGGTGGAAATTACTTTGGTTAAAGCGGGAAA
ATAAACCATTACCCAATGAAGTCCCAAGTATTCGGTGGGCTTACCTAGCATTAGCTAAATTAGGAGGATGGAATGACAGTAAACGAACAGGACGAGCCGG
TTGGCCCGTTCTGTGGGATGGATGGTTTAAATTACAAACCATCATTGAAGGCTATCATTTAGCACAATCTCTTGAATGCTTGGACTTGTGATCAAGAGAC
AG
CCATTATGTATATTTCTACTCCTCAAGATTGGGCTACTTCTCTTTTTGGTCAGGCTAATTTAGGCGATCCAAGGCGAACAAAACGATTAGTTAAAGTGGC
GACTAATCTTGCATTACACACAGGGAAATCTTTAGTGAAATCAAGCCAACAGCCAGCAGAGATTGAAGGCGCTTATCGCTTTATTCGCAACGAATCTATT
AATGCTAATGATATTGCCGAAGCCGGATTTCAAACAACAACACAAGAGGCTAACCGCCATGATTTATTGTTAGCGCTTGAAGATACAACGTCTCTTAACT
ATACCCATCGCGCTGTAAAAGAGCAGCTTGGTCATGTTAATGGTGGAAACAGAACTCGCGGTATTTATGCTCATTCCATCTTGCTTTTCGCACCAACTAA
CCACCAAGTGGTTGGGTTAATTGAACAAATACGGTGGACGCGAGATATAAAAACAAGAGGAAAAGGTGCACGTCATGCACAAACACCCTATAAAGAAAAA
GAAAGTTATAAATGGGAACAGGCTTCGATAAATATGGCATCCCGCCTTGGTGAGACTATGCAACAGGTTATATCTGTATGTGATCGTGAAGCTGATATTT
ATGAATATTTAACGTATAAAACTCAAGAAAACCAACGTTTTGTTGTTCGTTCAATGCAAAGCCGTTGTATCGAAGAAAGTGATAATAAGTTGTACGCTTT
TTCAGACCAATTACAACCTGCAGGCAATCGAAAAATCTATATCCCACAAAAAGGAGGGCGGAAAGCGCGAGAGGTTATTCTTGATATCCGATTCTCAACC
ATTACTCTCAAAGTGCCTGCCAATAAGAAAGGAAAAAGTATTCCACTATATTATGTCGGGTGCGTAGAGCAAGGTGCAGGTAACAACGGATTAAGCTGGC
ACTTGATGACGTCAGAGCCTGTTACGAATAGAGAAGAAGCACTGAAAATCGTTCAGTATTATGAGCAACGTTGGTTGATTGAGGACTATCACAAAGCTTG
GAAAAGTGGTGGAACCCAAGTTGAGTCATTACGCATGCAAAGCTATACCAATATTGAACGCATGGCCACAATACTCGCTTTCCTTGCTACACGAATCTTA
CAACTGAAATTTATGGGGCAGAATATAAAAGCTGATGAAGAAAGTTGTGAGTCAGTCTTATCGCCTATTGGGTGGAAATTACTTTGGTTAAAGCGGGAAA
ATAAACCATTACCCAATGAAGTCCCAAGTATTCGGTGGGCTTACCTAGCATTAGCTAAATTAGGAGGATGGAATGACAGTAAACGAACAGGACGAGCCGG
TTGGCCCGTTCTGTGGGATGGATGGTTTAAATTACAAACCATCATTGAAGGCTATCATTTAGCACAATCTCTTGAATGCTTGGACTTGTGATCAAGAGAC
AG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1386 bp | 461 aa | 103 | 1488 | + | No |
Chemistry : DDE
ORF sequence :
MYISTPQDWATSLFGQANLGDPRRTKRLVKVATNLALHTGKSLVKSSQQPAEIEGAYRFIRNESINANDIAEAGFQTTTQEANRHDLLLALEDTTSLNYT
HRAVKEQLGHVNGGNRTRGIYAHSILLFAPTNHQVVGLIEQIRWTRDIKTRGKGARHAQTPYKEKESYKWEQASINMASRLGETMQQVISVCDREADIYE
YLTYKTQENQRFVVRSMQSRCIEESDNKLYAFSDQLQPAGNRKIYIPQKGGRKAREVILDIRFSTITLKVPANKKGKSIPLYYVGCVEQGAGNNGLSWHL
MTSEPVTNREEALKIVQYYEQRWLIEDYHKAWKSGGTQVESLRMQSYTNIERMATILAFLATRILQLKFMGQNIKADEESCESVLSPIGWKLLWLKRENK
PLPNEVPSIRWAYLALAKLGGWNDSKRTGRAGWPVLWDGWFKLQTIIEGYHLAQSLECLDL
HRAVKEQLGHVNGGNRTRGIYAHSILLFAPTNHQVVGLIEQIRWTRDIKTRGKGARHAQTPYKEKESYKWEQASINMASRLGETMQQVISVCDREADIYE
YLTYKTQENQRFVVRSMQSRCIEESDNKLYAFSDQLQPAGNRKIYIPQKGGRKAREVILDIRFSTITLKVPANKKGKSIPLYYVGCVEQGAGNNGLSWHL
MTSEPVTNREEALKIVQYYEQRWLIEDYHKAWKSGGTQVESLRMQSYTNIERMATILAFLATRILQLKFMGQNIKADEESCESVLSPIGWKLLWLKRENK
PLPNEVPSIRWAYLALAKLGGWNDSKRTGRAGWPVLWDGWFKLQTIIEGYHLAQSLECLDL
Blast result :
Comments
ISPpr3 is 74% aa similar to ISPlu9.
ISPpr3 was found by screening completely sequenced genomes for sequences homologous to the IS50R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-99-D(N3)-132-E(C1). The copy number in Photobacterium profundum SS9 is 7, 2 copies lying on chromosome 1 and 5 on chromosome 2.
ISPpr3 was found by screening completely sequenced genomes for sequences homologous to the IS50R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-99-D(N3)-132-E(C1). The copy number in Photobacterium profundum SS9 is 7, 2 copies lying on chromosome 1 and 5 on chromosome 2.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Bartlett,D. and Valle,G.(2004)Unpublished
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18