ISLpn5
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002942 | ND | Legionella pneumophila | Legionella pneumophila subsp. pneumophila Philadelphia 1 |
DNA section
IS Length : 1571 bp
Ends
IR Length : 17
IRL : CTTACTATTACCCATAAGTCTATAAATTATAAGAAAAACTTTTTCTTTAA
IRR : CTTACTATTACCCATAACTAAGAAAGAGCAAGATTCCAACCTTCCGCAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCCCGTCC | CCTAAGAAC | GCAGCATGCG | 9 |
DNA sequence
CTTACTATTACCCATAAGTCTATAAATTATAAGAAAAACTTTTTCTTTAATTTAACTCTCTGTTATAAATAAGGGCAGTATTTTGACTGATAATGAGAGC
AAATGATAAAAGGGAATCAAAATAACTCATCTTCTGGATGGGCAGAGAGTGAGTTCGGAATAGTTAATTTTGGTGATAAACGATTAAGTAAAAGACTTCT
AAAAATAGCAGATAGCTTTGCCAACTCCCCTGAATGTTCAATAAATCGAGCATGTGACGATTGGCATCAAAGTAAAGCAGCTTATAGATTTTTTCAAAAT
GATGCTGTATCGGAAAGAAAAATCCTTGATAGTCATATCACTAAAACTATTGAAAGAGCCAAGAACTATCCAACTATTTTAGCCATCCAGGATACGAGTT
ATATTTCTTATAAAAATCATAAAAAGACTGAAGGATTAGGAATTATAGCAGCTAGAGTTCGCTCTAAAACAACTAATTTTCAAACTCATGGATTGGTAAT
GCATACCACATTTGCAGTAACTACAGAAGGCCTGCCTATAGGATTACTGGATCAAAAAATTAGTTCTAGACCGCTTTTAGATGAGACAGTAAAGGAGTTG
AAAAAAAGAAGTCATAATATCGCTCTTCCTATAGAGGAAAAAGAAAGTATGCGTTGGATCGAGTCTCTCGAACACTCTAATAATTATCCGGATTTAAAAA
ATGCTAAGGTGGTTACTGTTTGTGATAGAGAGGCAGATATTTATGATTTATTTGAAGTAGCATCGACAAATCAATGTCCTTTTGTAGTGAGGGCACGTCA
AGATAGAACAGTAAATAAGACATCAATTTACTCTAAAAAAAGTGGTGAAAAATTATGGGATTTGGTGAGTGGTTCGCCTTGTCGGGGGGAAATTCAAGTC
ACTATTCCTGCTCGAGATAATAAGCCTAAAAGAACAGCAACATTAGAAGTAAGGTTTGATCATTTTGTGATGAACCCTCCTAAAAATAACGTGAAACGTA
AAACCAGAACACTCCCTGATTTAAAACTAAATGCAGTGTATGTCATAGAACAATCTCCTCCTCTGGGCGAAGAGCCTATGAATTGGATGTTGTTGACCAA
CATAGACATTAATAATTTTGAAGAGGCAGTAGAAAAAATACAATGGTATTGCTTAAGATGGAGGATAGAAATTTTTCACAAAATCTTAAAATCTGGTTTT
AAAGTTGAAGAATGCAGGCTCGGTGCAGCCGATAGATTAGTTCGCTTTCTTACAATAATGAGTGTCATTGCATGGCGAATTTTTTTTATCACACTAGTTG
CTAGAGAAAGCCCCGATCTTCCTTGTTCGTTCTTATTGGCTAATGAGGAATGGAACGTCTTGTATACCAAAATACATCATACAAAACACTATCCTGAAAC
ACCACCCACAATAAAAGAAGCCGTGAAATGGATAGCTCAGCTAGGCGGCTTTTTAGCCCGTAAAAACGATGGGGAACCTGGTCCTATAACATTGTGGAGA
GGATGGAAAAGATTAGTCGACCTTGCGGAAGGTTGGAATCTTGCTCTTTCTTAGTTATGGGTAATAGTAAG
AAATGATAAAAGGGAATCAAAATAACTCATCTTCTGGATGGGCAGAGAGTGAGTTCGGAATAGTTAATTTTGGTGATAAACGATTAAGTAAAAGACTTCT
AAAAATAGCAGATAGCTTTGCCAACTCCCCTGAATGTTCAATAAATCGAGCATGTGACGATTGGCATCAAAGTAAAGCAGCTTATAGATTTTTTCAAAAT
GATGCTGTATCGGAAAGAAAAATCCTTGATAGTCATATCACTAAAACTATTGAAAGAGCCAAGAACTATCCAACTATTTTAGCCATCCAGGATACGAGTT
ATATTTCTTATAAAAATCATAAAAAGACTGAAGGATTAGGAATTATAGCAGCTAGAGTTCGCTCTAAAACAACTAATTTTCAAACTCATGGATTGGTAAT
GCATACCACATTTGCAGTAACTACAGAAGGCCTGCCTATAGGATTACTGGATCAAAAAATTAGTTCTAGACCGCTTTTAGATGAGACAGTAAAGGAGTTG
AAAAAAAGAAGTCATAATATCGCTCTTCCTATAGAGGAAAAAGAAAGTATGCGTTGGATCGAGTCTCTCGAACACTCTAATAATTATCCGGATTTAAAAA
ATGCTAAGGTGGTTACTGTTTGTGATAGAGAGGCAGATATTTATGATTTATTTGAAGTAGCATCGACAAATCAATGTCCTTTTGTAGTGAGGGCACGTCA
AGATAGAACAGTAAATAAGACATCAATTTACTCTAAAAAAAGTGGTGAAAAATTATGGGATTTGGTGAGTGGTTCGCCTTGTCGGGGGGAAATTCAAGTC
ACTATTCCTGCTCGAGATAATAAGCCTAAAAGAACAGCAACATTAGAAGTAAGGTTTGATCATTTTGTGATGAACCCTCCTAAAAATAACGTGAAACGTA
AAACCAGAACACTCCCTGATTTAAAACTAAATGCAGTGTATGTCATAGAACAATCTCCTCCTCTGGGCGAAGAGCCTATGAATTGGATGTTGTTGACCAA
CATAGACATTAATAATTTTGAAGAGGCAGTAGAAAAAATACAATGGTATTGCTTAAGATGGAGGATAGAAATTTTTCACAAAATCTTAAAATCTGGTTTT
AAAGTTGAAGAATGCAGGCTCGGTGCAGCCGATAGATTAGTTCGCTTTCTTACAATAATGAGTGTCATTGCATGGCGAATTTTTTTTATCACACTAGTTG
CTAGAGAAAGCCCCGATCTTCCTTGTTCGTTCTTATTGGCTAATGAGGAATGGAACGTCTTGTATACCAAAATACATCATACAAAACACTATCCTGAAAC
ACCACCCACAATAAAAGAAGCCGTGAAATGGATAGCTCAGCTAGGCGGCTTTTTAGCCCGTAAAAACGATGGGGAACCTGGTCCTATAACATTGTGGAGA
GGATGGAAAAGATTAGTCGACCTTGCGGAAGGTTGGAATCTTGCTCTTTCTTAGTTATGGGTAATAGTAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1449 bp | 483 aa | 103 | 1551 | + | No |
Chemistry : DDE
ORF sequence :
MIKGNQNNSSSGWAESEFGIVNFGDKRLSKRLLKIADSFANSPECSINRACDDWHQSKAAYRFFQNDAVSERKILDSHITKTIERAKNYPTILAIQDTSY
ISYKNHKKTEGLGIIAARVRSKTTNFQTHGLVMHTTFAVTTEGLPIGLLDQKISSRPLLDETVKELKKRSHNIALPIEEKESMRWIESLEHSNNYPDLKN
AKVVTVCDREADIYDLFEVASTNQCPFVVRARQDRTVNKTSIYSKKSGEKLWDLVSGSPCRGEIQVTIPARDNKPKRTATLEVRFDHFVMNPPKNNVKRK
TRTLPDLKLNAVYVIEQSPPLGEEPMNWMLLTNIDINNFEEAVEKIQWYCLRWRIEIFHKILKSGFKVEECRLGAADRLVRFLTIMSVIAWRIFFITLVA
RESPDLPCSFLLANEEWNVLYTKIHHTKHYPETPPTIKEAVKWIAQLGGFLARKNDGEPGPITLWRGWKRLVDLAEGWNLALS
ISYKNHKKTEGLGIIAARVRSKTTNFQTHGLVMHTTFAVTTEGLPIGLLDQKISSRPLLDETVKELKKRSHNIALPIEEKESMRWIESLEHSNNYPDLKN
AKVVTVCDREADIYDLFEVASTNQCPFVVRARQDRTVNKTSIYSKKSGEKLWDLVSGSPCRGEIQVTIPARDNKPKRTATLEVRFDHFVMNPPKNNVKRK
TRTLPDLKLNAVYVIEQSPPLGEEPMNWMLLTNIDINNFEEAVEKIQWYCLRWRIEIFHKILKSGFKVEECRLGAADRLVRFLTIMSVIAWRIFFITLVA
RESPDLPCSFLLANEEWNVLYTKIHHTKHYPETPPTIKEAVKWIAQLGGFLARKNDGEPGPITLWRGWKRLVDLAEGWNLALS
Blast result :
Comments
ISLpn5 is 48% aa similar to ISAzo5.
ISLpn5 was found by screening completely sequenced genomes for sequences homologous to the IS50R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-111-D(N3)-147-E(C1). The copy number in 'Legionella pneumophila subsp. pneumophila str. Philadelphia 1' is 1.
ISLpn5 was found by screening completely sequenced genomes for sequences homologous to the IS50R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-111-D(N3)-147-E(C1). The copy number in 'Legionella pneumophila subsp. pneumophila str. Philadelphia 1' is 1.
References
1] Chien,M., Morozova,I., Shi,S., Sheng,H., Chen,J., Gomez,S.M., Asamani,G., Hill,K., Nuara,J., Feder,M., Rineer,J., Greenberg,J.J., Steshenko,V., Park,S.H., Zhao,B., Teplitskaya,E., Edwards,J.R., Pampou,S., Georghiou,A., Chou,I.-C., Iannuccilli,W., Ulz,M.E., Kim,D.H., Geringer-Sameth,A., Goldsberry,C., Morozov,P., Fischer,S.G., Segal,G., Qu,X., Rzhetsky,A., Zhang,P., Cayanis,E., De Jong,P.J., Ju,J., Kalachikov,S., Shuman,H.A. and Russo,J.J.(2004)Science 305(5692), 1966-1968.
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18