ISLpn2
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006369 | ND | Legionella pneumophila | Legionella pneumophila Lens |
DNA section
IS Length : 1498 bp
Ends
IR Length : 15/20
IRL : CTGAATCTTCTACACATCTTGTCTATCGCAAAGAACTATGATCAAATCAC
IRR : CTGTCTCTTGATCACATCTTCATCAACTCTGAAGCAATCCTGAGTCCTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGGGTCTTT | NNNNNNNNN | GGTAGAGCCG | 9 |
CAGGGTCTTT | CCCAAATAC | GGGGGCATTT | 9 |
GTGGCTCTAC | CCCAAATGAA | GGGGCACTTT | 10 |
AGGCTCTTCC | NNNNNNNNN | GGTAGAGCCC | 9 |
DNA sequence
CTGAATCTTCTACACATCTTGTCTATCGCAAAGAACTATGATCAAATCACCTCTTTTTAAGGTGATATATGGATTTAGCAATTGAGGATGCCGCAGCATG
GTCAGAAGCTATTTTTGGTTCAGTTGCTTTGGGGGATAAACGCCTCACTCGTCGATTAATTCAAATAGGTAAACAATTATCATCCATACCTGGTGGTTCT
CTTTCTGAAAGTTGCGAAGGACAGGATGCGCTTATAGAAGGTAGTTATCGTTTTTTGCGAAACAAACGAGTCACAGCGAATCAAATTTCAGAGGGGGGTT
ATCAAGTAACAAGTTTGTTATCTCAGTCAATCCCCACGCTTTTAGCCATTGAAGACACGACCACGCTATCCTATACCCATCAAGTAAAGGAATCATTAGG
TGATTTAGGCGGCCCTAAAGAAAAAAGCAACCGAGGGTTCCATGTTCATACCACCATGCTCATGGATGCAGAACAAGAGAAAACAATAGGATTAATCGCG
CAAGAACGTTGGTGTCGAGATACCAAAGAAAGGGGCAAAAAAAATCATCGACGAGTTCGATTATATACAGAGAAAGAAAGCTATAAATGGGAAAAGAATA
CTCGAGAATTAGAGAAGCGTTTGGGTTCTAAAATGTCTGATGTGATTTCTGTTTGCGATAGGGAAGCAGATATTTTTGAATACATTCAGTATAAGTTAGA
TCATAATCAACGTTTTATTGTTAGAGCGAGCCATAATCGAAAACTAGAAGGAAGTGAGGGTTATTTATTTCAAATGTTACCTTCAGCAACCACCTTGGGT
ACTTATACAATTGAAATAGCTCAAAAAACAAATAGAAAGAAACGCCAAGTGACTCTTGAGTTAAAAACAGCAACCGTTACGTTCTCACTACCAGAGCGAA
GAGCCAAAGCACGGGAGTTAAAACCAATCACTTTAAATGTGGTTATCGCAAAAGAAAAAAATCCATCTGAAAGCGATTGTCTTGAATGGATTCTATTAAC
TACAGAAGCTACAACTACATTAGAGAGTACTCGCAAAATAACTCGATATTATGAGATGAGATGGCGCATTGAAGATTTTCATAAAGCATGGAAATCGGGT
GCTGGTGCTGAAGATCAGCGTATGCAATCGATTGAAAATTTAGAGAAAATGATTGTAATCCTTTCGTTTGTAGCTATTCGATTACTTCAATTAAAAGAGT
ATTTTGAATACCCAACTACTTTAGATATCAATGATAACGCTACTTCTTGCGATGAATTACTCACCAACTCTGAATGGAAAGTTTTGTGGAATAGTGTTGA
AAAAAAATCATTACCTGAAAAAATACCTACAGCTGCTTGGGCTTATAAAGCAATAGCTAAGTTGGGTGGTTGGACTGACTCTAAAAGGACTGGCAAAGCA
GCTTGGTCTACTATCTGGAAAGGATGGTTTCGCTTACAGGAACGAGTTGAAGGACTCAGGATTGCTTCAGAGTTGATGAAGATGTGATCAAGAGACAG
GTCAGAAGCTATTTTTGGTTCAGTTGCTTTGGGGGATAAACGCCTCACTCGTCGATTAATTCAAATAGGTAAACAATTATCATCCATACCTGGTGGTTCT
CTTTCTGAAAGTTGCGAAGGACAGGATGCGCTTATAGAAGGTAGTTATCGTTTTTTGCGAAACAAACGAGTCACAGCGAATCAAATTTCAGAGGGGGGTT
ATCAAGTAACAAGTTTGTTATCTCAGTCAATCCCCACGCTTTTAGCCATTGAAGACACGACCACGCTATCCTATACCCATCAAGTAAAGGAATCATTAGG
TGATTTAGGCGGCCCTAAAGAAAAAAGCAACCGAGGGTTCCATGTTCATACCACCATGCTCATGGATGCAGAACAAGAGAAAACAATAGGATTAATCGCG
CAAGAACGTTGGTGTCGAGATACCAAAGAAAGGGGCAAAAAAAATCATCGACGAGTTCGATTATATACAGAGAAAGAAAGCTATAAATGGGAAAAGAATA
CTCGAGAATTAGAGAAGCGTTTGGGTTCTAAAATGTCTGATGTGATTTCTGTTTGCGATAGGGAAGCAGATATTTTTGAATACATTCAGTATAAGTTAGA
TCATAATCAACGTTTTATTGTTAGAGCGAGCCATAATCGAAAACTAGAAGGAAGTGAGGGTTATTTATTTCAAATGTTACCTTCAGCAACCACCTTGGGT
ACTTATACAATTGAAATAGCTCAAAAAACAAATAGAAAGAAACGCCAAGTGACTCTTGAGTTAAAAACAGCAACCGTTACGTTCTCACTACCAGAGCGAA
GAGCCAAAGCACGGGAGTTAAAACCAATCACTTTAAATGTGGTTATCGCAAAAGAAAAAAATCCATCTGAAAGCGATTGTCTTGAATGGATTCTATTAAC
TACAGAAGCTACAACTACATTAGAGAGTACTCGCAAAATAACTCGATATTATGAGATGAGATGGCGCATTGAAGATTTTCATAAAGCATGGAAATCGGGT
GCTGGTGCTGAAGATCAGCGTATGCAATCGATTGAAAATTTAGAGAAAATGATTGTAATCCTTTCGTTTGTAGCTATTCGATTACTTCAATTAAAAGAGT
ATTTTGAATACCCAACTACTTTAGATATCAATGATAACGCTACTTCTTGCGATGAATTACTCACCAACTCTGAATGGAAAGTTTTGTGGAATAGTGTTGA
AAAAAAATCATTACCTGAAAAAATACCTACAGCTGCTTGGGCTTATAAAGCAATAGCTAAGTTGGGTGGTTGGACTGACTCTAAAAGGACTGGCAAAGCA
GCTTGGTCTACTATCTGGAAAGGATGGTTTCGCTTACAGGAACGAGTTGAAGGACTCAGGATTGCTTCAGAGTTGATGAAGATGTGATCAAGAGACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1416 bp | 472 aa | 69 | 1484 | + | No |
Chemistry : DDE
ORF sequence :
MDLAIEDAAAWSEAIFGSVALGDKRLTRRLIQIGKQLSSIPGGSLSESCEGQDALIEGSYRFLRNKRVTANQISEGGYQVTSLLSQSIPTLLAIEDTTTL
SYTHQVKESLGDLGGPKEKSNRGFHVHTTMLMDAEQEKTIGLIAQERWCRDTKERGKKNHRRVRLYTEKESYKWEKNTRELEKRLGSKMSDVISVCDREA
DIFEYIQYKLDHNQRFIVRASHNRKLEGSEGYLFQMLPSATTLGTYTIEIAQKTNRKKRQVTLELKTATVTFSLPERRAKARELKPITLNVVIAKEKNPS
ESDCLEWILLTTEATTTLESTRKITRYYEMRWRIEDFHKAWKSGAGAEDQRMQSIENLEKMIVILSFVAIRLLQLKEYFEYPTTLDINDNATSCDELLTN
SEWKVLWNSVEKKSLPEKIPTAAWAYKAIAKLGGWTDSKRTGKAAWSTIWKGWFRLQERVEGLRIASELMKM
SYTHQVKESLGDLGGPKEKSNRGFHVHTTMLMDAEQEKTIGLIAQERWCRDTKERGKKNHRRVRLYTEKESYKWEKNTRELEKRLGSKMSDVISVCDREA
DIFEYIQYKLDHNQRFIVRASHNRKLEGSEGYLFQMLPSATTLGTYTIEIAQKTNRKKRQVTLELKTATVTFSLPERRAKARELKPITLNVVIAKEKNPS
ESDCLEWILLTTEATTTLESTRKITRYYEMRWRIEDFHKAWKSGAGAEDQRMQSIENLEKMIVILSFVAIRLLQLKEYFEYPTTLDINDNATSCDELLTN
SEWKVLWNSVEKKSLPEKIPTAAWAYKAIAKLGGWTDSKRTGKAAWSTIWKGWFRLQERVEGLRIASELMKM
Blast result :
Comments
ISLpn2 is 59% aa similar to IS50R.
ISLpn2 was found by screening completely sequenced genomes for sequences homologous to the IS50R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-100-D(N3)-137-E(C1). The copy number in Legionella pneumophila str. Lens is 4.
ISLpn2 was found by screening completely sequenced genomes for sequences homologous to the IS50R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-100-D(N3)-137-E(C1). The copy number in Legionella pneumophila str. Lens is 4.
References
1] Cazalet,C., Rusniok,C., Br, Zidane,N., Magnier,A., Ma,L., Tichit,M., Jarraud,S., Bouchier,C., Vandenesch,F., Kunst,F., Etienne,J., Glaser,P. and Buchrieser,C.(2004)Nat. Genet. 36(11), 1165-1173.
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18