ISSfl9
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004337 | ND | Shigella flexneri | Shigella flexneri 2a 301 |
DNA section
IS Length : 1304 bp
Ends
IR Length : 22/23
IRL : AGGCTGAGGAATCCCCAGAAAAGAAGACAGGCATAGAGTTTTGTGATCTA
IRR : AGGCTGAGGGATCCCCAGAAAATTTTCATCAGTAAGCCAGCACCATACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGCTCCCTT | TT | CGGGGAGGAA | 2 |
DNA sequence
AGGCTGAGGAATCCCCAGAAAAGAAGACAGGCATAGAGTTTTGTGATCTACTGATTGCGCTAACAAATTCAATGAGATCACCTCTATGCCTGCCCGTAAA
GTATGCCAGACTTTTTTCCGTAATGCTTTAGCTTCCACGCATCAGTATCGACAAAATGCCATTATTGATTCTGCTGCTGCTTTAGTCGGTGGCGCATCTC
TTTCTCTTACCAGCATTGGCCGGCATTTACCCGGTCCTGCTCGCGTGAAAGATAAAATAAAACGCGTTGACTGTCTGTTGGGTAATAAACGACTTCATAA
TGATATCCCTCTGATATTCAAAAATATTACATCCATGATGACAAATAAACTGTCGTGGTGTGTTATCGCTGTTGACTGGAGCGGTTACCCTTTTCAGGAA
TATCATGTCCTTCGTGCCAGCCTCCTCTGCGACGGTCGCTCTATCCCCCTGATGAGTCAGGTCTTCCCGTCAAAAAAAAATAACGAGGCGGTGGAAATCG
CTTTTCTGGATGCGCTTTCCGGGGCCATTTCTCCCCGGACTCGTGTTGTTATTGTTACTGATGCTGGTTTTCAAAGTGCATGGTTCCGTCATATCAAATC
ACAGGGATGGGATTTTATTGGTCGTATCAGGGGGGTAGTGAAGTTCAGGCTGGATAGTGACAAAGATAAGTGGCTGGACATAAAAATGTGCAGGGGGAGT
TCAGAGGCAAAATACCTGGGGACGGGAACCCTGGCCCGGAAAAAACGCTCGCAGTGTGAAGGACATTTTTATCTTTATAAACATTCACCTAAAGGCAGAA
AAAGCAGGCGTGCCAGAGGGAGGCCGGGCTTACCAACAACGGAAAAAGAACAAAAAGCCGCAGGCAGAGAACCATGGTTAATATTCAGCAATACAGCTGA
GTTTAATGCCAAAAAAATCATGAAACTGTACAGTCGAAGAATGCAGATAGAGCAAAACTTTCGGGATGAAAAAAGTGAACGCTTTGGTTTTGGCCTTCGG
GCGAGCAGAAGTCGGAGGGGAGAGCGTTTTCTGGTATTAAGTCTACTGGTTACACTGGCCAGTATCGTACTCTGGCTACTTGGTTATCATTTTGAAAATA
AAGGATTTCATTTAAAGTATCAGGCTAATAGTCTCAAAAAACGAAGAGTATTGTCTTTTCTGACGCTGGCTGAAAACGTCCTGAGATTTAACCCTGAACT
TCTACGACGAGCACAACCTGAAAAGATATTGTGCCGGTTGGCCAGCACTTACCGAAGTATGGTGCTGGCTTACTGATGAAAATTTTCTGGGGATCCCTCA
GCCT
GTATGCCAGACTTTTTTCCGTAATGCTTTAGCTTCCACGCATCAGTATCGACAAAATGCCATTATTGATTCTGCTGCTGCTTTAGTCGGTGGCGCATCTC
TTTCTCTTACCAGCATTGGCCGGCATTTACCCGGTCCTGCTCGCGTGAAAGATAAAATAAAACGCGTTGACTGTCTGTTGGGTAATAAACGACTTCATAA
TGATATCCCTCTGATATTCAAAAATATTACATCCATGATGACAAATAAACTGTCGTGGTGTGTTATCGCTGTTGACTGGAGCGGTTACCCTTTTCAGGAA
TATCATGTCCTTCGTGCCAGCCTCCTCTGCGACGGTCGCTCTATCCCCCTGATGAGTCAGGTCTTCCCGTCAAAAAAAAATAACGAGGCGGTGGAAATCG
CTTTTCTGGATGCGCTTTCCGGGGCCATTTCTCCCCGGACTCGTGTTGTTATTGTTACTGATGCTGGTTTTCAAAGTGCATGGTTCCGTCATATCAAATC
ACAGGGATGGGATTTTATTGGTCGTATCAGGGGGGTAGTGAAGTTCAGGCTGGATAGTGACAAAGATAAGTGGCTGGACATAAAAATGTGCAGGGGGAGT
TCAGAGGCAAAATACCTGGGGACGGGAACCCTGGCCCGGAAAAAACGCTCGCAGTGTGAAGGACATTTTTATCTTTATAAACATTCACCTAAAGGCAGAA
AAAGCAGGCGTGCCAGAGGGAGGCCGGGCTTACCAACAACGGAAAAAGAACAAAAAGCCGCAGGCAGAGAACCATGGTTAATATTCAGCAATACAGCTGA
GTTTAATGCCAAAAAAATCATGAAACTGTACAGTCGAAGAATGCAGATAGAGCAAAACTTTCGGGATGAAAAAAGTGAACGCTTTGGTTTTGGCCTTCGG
GCGAGCAGAAGTCGGAGGGGAGAGCGTTTTCTGGTATTAAGTCTACTGGTTACACTGGCCAGTATCGTACTCTGGCTACTTGGTTATCATTTTGAAAATA
AAGGATTTCATTTAAAGTATCAGGCTAATAGTCTCAAAAAACGAAGAGTATTGTCTTTTCTGACGCTGGCTGAAAACGTCCTGAGATTTAACCCTGAACT
TCTACGACGAGCACAACCTGAAAAGATATTGTGCCGGTTGGCCAGCACTTACCGAAGTATGGTGCTGGCTTACTGATGAAAATTTTCTGGGGATCCCTCA
GCCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1188 bp | 396 aa | 86 | 1273 | + | No |
Chemistry : DDE
ORF sequence :
MPARKVCQTFFRNALASTHQYRQNAIIDSAAALVGGASLSLTSIGRHLPGPARVKDKIKRVDCLLGNKRLHNDIPLIFKNITSMMTNKLSWCVIAVDWSG
YPFQEYHVLRASLLCDGRSIPLMSQVFPSKKNNEAVEIAFLDALSGAISPRTRVVIVTDAGFQSAWFRHIKSQGWDFIGRIRGVVKFRLDSDKDKWLDIK
MCRGSSEAKYLGTGTLARKKRSQCEGHFYLYKHSPKGRKSRRARGRPGLPTTEKEQKAAGREPWLIFSNTAEFNAKKIMKLYSRRMQIEQNFRDEKSERF
GFGLRASRSRRGERFLVLSLLVTLASIVLWLLGYHFENKGFHLKYQANSLKKRRVLSFLTLAENVLRFNPELLRRAQPEKILCRLASTYRSMVLAY
YPFQEYHVLRASLLCDGRSIPLMSQVFPSKKNNEAVEIAFLDALSGAISPRTRVVIVTDAGFQSAWFRHIKSQGWDFIGRIRGVVKFRLDSDKDKWLDIK
MCRGSSEAKYLGTGTLARKKRSQCEGHFYLYKHSPKGRKSRRARGRPGLPTTEKEQKAAGREPWLIFSNTAEFNAKKIMKLYSRRMQIEQNFRDEKSERF
GFGLRASRSRRGERFLVLSLLVTLASIVLWLLGYHFENKGFHLKYQANSLKKRRVLSFLTLAENVLRFNPELLRRAQPEKILCRLASTYRSMVLAY
Blast result :
Comments
ISSfl9 is 78% aa similar to ISSfl1.
ISSfl9 was found by screening completely sequenced genomes for seqences homologous to the ISXaca1 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-61-D(N3)-129-E(C1). The copy number in Shigella flexneri 2a str. 301 is 1.
ISSfl9 was found by screening completely sequenced genomes for seqences homologous to the ISXaca1 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-61-D(N3)-129-E(C1). The copy number in Shigella flexneri 2a str. 301 is 1.
References
1]Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H., Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D., Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K., Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y., Hou,Y. and Yu,J.(2002)Nucleic Acids Res. 30,4432-4441