ISLpn1
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006368 | ND | Legionella pneumophila | Legionella pneumophila Paris |
DNA section
IS Length : 1355 bp
Ends
IR Length : 16/18
IRL : CTGAGGAATCCTGTCATTTAATTGAGCAGTTACTTTTTTAAAGTGTACAT
IRR : CTGAGTGATCCTGTCATTATTTTACTCAGCTCAAAGCGCCACATTCAATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCGAAGGCG | CGCCTTCGCG | 0 | |
CGCGAAGGCG | CGCCTTCGCG | 0 |
DNA sequence
CTGAGGAATCCTGTCATTTAATTGAGCAGTTACTTTTTTAAAGTGTACATTAACAAAGATGGGAAAAGAAATTGAAGTGCATACAGATTCATGATCAAAT
TTGTTTACCAAGACAAAACTAATCGGAAGTTGTATGCACAAGAAAATATTTTGCCAGAATTTATTGGATAGCGCATTAAAGAATTCAATTCATGCTAAAA
GAAAACAATGTTTGGTTCGCTTTTTAAGTGACTTAATGGACTACGATACCACATTATCCGTTACAGAGATTGGTAAAAAATTAACATCCAAAACGACAGT
TAAAAGTAAAATATATGCGGCTCAAACATTCGTGAATAATTTCAAACTGGAAAGGGATATTGTTTGCATTTATAAGAGTCTGACCCATTTTTTTTGGAGC
CATGCAAAAGAGATTGTTGTTTTAATTGATTGGACTGGAGGATGTAGCGAGGGCTATCATGTTCTGGAAGCTAGTATTGCAGCTCATGGTCGCTCAATAC
CAATCTATCACGAAGTTCATTCTGAGTCAGAGCAAGAAAATGCAGAGATTCATCGTCAATTTTTATTACGCTTGAAAGAGGTTATTCCTTCGAGTTTGTC
CGTGACAATTATTACAGACGCGGGTTTTCATCGTGAGTGGTTTCAACAGGTGCTTGAGCTAGGCTGGGATGTTATTGGCCGCATCTATTCTTTGTATTGC
TATCAGATTGAAGGAGAAACAAATTGGCACAAAGTGAAAGATATTCTTTTTGAAGGTATTGGAAAAGCTTCTGCATTAGGTAAGGTCAAGCTTGGAAAAA
CAAAAAAGGCGGTGGAAGGTTATCTTTATACCTATAAAGAAAAACTCTCAGGCAAGGTACGAAAAAAGAAAAATAAATATCCTTCTCATGATAAAGCTCA
TTCCAATTATTATAAAAATGGGTGGGTTCTCTTTAGCTCATTAAATAAGCATGCTCGATTTCTCGTGTCTTATTACAAAAAAAGAATGCAAATCGAACAA
AATTTCAAAGACATAAAAAATGAACAACTGGGAATGGGATTTCGACGAAATCAATCTTCAGGAAAAACCAGAGTTAATATGCTTTTTTTTCTTGCTGTTT
TATTAATTATGATTGCCTGGTGGTTCGGTTTAATGATTGAATCCCTTAATAAACATCGCTCTTATCAAGCAAATACTATAAAAAACAAACGAGTTCGCTC
TTTTATTCATCTTGCTAGAATGGCTTATCGACATGAGCCGGAATTACTGAATTGGGATTTATTTCAATACATAATGAGTGATTTGAAACAGCAATATCAC
TCATTTATTGAATGTGGCGCTTTGAGCTGAGTAAAATAATGACAGGATCACTCAG
TTGTTTACCAAGACAAAACTAATCGGAAGTTGTATGCACAAGAAAATATTTTGCCAGAATTTATTGGATAGCGCATTAAAGAATTCAATTCATGCTAAAA
GAAAACAATGTTTGGTTCGCTTTTTAAGTGACTTAATGGACTACGATACCACATTATCCGTTACAGAGATTGGTAAAAAATTAACATCCAAAACGACAGT
TAAAAGTAAAATATATGCGGCTCAAACATTCGTGAATAATTTCAAACTGGAAAGGGATATTGTTTGCATTTATAAGAGTCTGACCCATTTTTTTTGGAGC
CATGCAAAAGAGATTGTTGTTTTAATTGATTGGACTGGAGGATGTAGCGAGGGCTATCATGTTCTGGAAGCTAGTATTGCAGCTCATGGTCGCTCAATAC
CAATCTATCACGAAGTTCATTCTGAGTCAGAGCAAGAAAATGCAGAGATTCATCGTCAATTTTTATTACGCTTGAAAGAGGTTATTCCTTCGAGTTTGTC
CGTGACAATTATTACAGACGCGGGTTTTCATCGTGAGTGGTTTCAACAGGTGCTTGAGCTAGGCTGGGATGTTATTGGCCGCATCTATTCTTTGTATTGC
TATCAGATTGAAGGAGAAACAAATTGGCACAAAGTGAAAGATATTCTTTTTGAAGGTATTGGAAAAGCTTCTGCATTAGGTAAGGTCAAGCTTGGAAAAA
CAAAAAAGGCGGTGGAAGGTTATCTTTATACCTATAAAGAAAAACTCTCAGGCAAGGTACGAAAAAAGAAAAATAAATATCCTTCTCATGATAAAGCTCA
TTCCAATTATTATAAAAATGGGTGGGTTCTCTTTAGCTCATTAAATAAGCATGCTCGATTTCTCGTGTCTTATTACAAAAAAAGAATGCAAATCGAACAA
AATTTCAAAGACATAAAAAATGAACAACTGGGAATGGGATTTCGACGAAATCAATCTTCAGGAAAAACCAGAGTTAATATGCTTTTTTTTCTTGCTGTTT
TATTAATTATGATTGCCTGGTGGTTCGGTTTAATGATTGAATCCCTTAATAAACATCGCTCTTATCAAGCAAATACTATAAAAAACAAACGAGTTCGCTC
TTTTATTCATCTTGCTAGAATGGCTTATCGACATGAGCCGGAATTACTGAATTGGGATTTATTTCAATACATAATGAGTGATTTGAAACAGCAATATCAC
TCATTTATTGAATGTGGCGCTTTGAGCTGAGTAAAATAATGACAGGATCACTCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1194 bp | 358 aa | 134 | 1327 | + | No |
Chemistry : DDE
ORF sequence :
MHKKIFCQNLLDSALKNSIHAKRKQCLVRFLSDLMDYDTTLSVTEIGKKLTSKTTVKSKIYAAQTFVNNFKLERDIVCIYKSLTHFFWSHAKEIVVLIDW
TGGCSEGYHVLEASIAAHGRSIPIYHEVHSESEQENAEIHRQFLLRLKEVIPSSLSVTIITDAGFHREWFQQVLELGWDVIGRIYSLYCYQIEGETNWHK
VKDILFEGIGKASALGKVKLGKTKKAVEGYLYTYKEKLSGKVRKKKNKYPSHDKAHSNYYKNGWVLFSSLNKHARFLVSYYKKRMQIEQNFKDIKNEQLG
MGFRRNQSSGKTRVNMLFFLAVLLIMIAWWFGLMIESLNKHRSYQANTIKNKRVRSFIHLARMAYRHEPELLNWDLFQYIMSDLKQQYHSFIECGALS
TGGCSEGYHVLEASIAAHGRSIPIYHEVHSESEQENAEIHRQFLLRLKEVIPSSLSVTIITDAGFHREWFQQVLELGWDVIGRIYSLYCYQIEGETNWHK
VKDILFEGIGKASALGKVKLGKTKKAVEGYLYTYKEKLSGKVRKKKNKYPSHDKAHSNYYKNGWVLFSSLNKHARFLVSYYKKRMQIEQNFKDIKNEQLG
MGFRRNQSSGKTRVNMLFFLAVLLIMIAWWFGLMIESLNKHRSYQANTIKNKRVRSFIHLARMAYRHEPELLNWDLFQYIMSDLKQQYHSFIECGALS
Blast result :
Comments
ISLpn1 is 52% aa similar to ISSfl1.
ISLpn1 was found by screening completely sequenced genomes for sequences homologous to the IS10R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-62-D(N3)-125-E(C1). The copy number in Legionella pneumophila str. Paris is 2.
ISLpn1 was found by screening completely sequenced genomes for sequences homologous to the IS10R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-62-D(N3)-125-E(C1). The copy number in Legionella pneumophila str. Paris is 2.
References
1] Cazalet,C., Rusniok,C., Br, Zidane,N., Magnier,A., Ma,L., Tichit,M., Jarraud,S., Bouchier,C., Vandenesch,F., Kunst,F., Etienne,J., Glaser,P. and Buchrieser,C.
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18