ISPepr1

  • Family IS4
  • Group ISPepr1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pelobacter propionicus
Pelobacter propionicus DSM 2379
DNA section
IS Length : 1556 bp

Ends


IR Length : 17

IRL : CTCAACTTTCGCAGTTGGTATAAATACGCAAAATATTGTAATTATTAATA
IRR : CTCAACTTTCGCAGTTGATGATTTACCCGTAACCGCTTGATAGAGCATGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTACACAATTCCTGTTAATTAACATTTAGCCCGAGTAAAGC3

DNA sequence

CTCAACTTTCGCAGTTGGTATAAATACGCAAAATATTGTAATTATTAATAGTATAGCGTCGTAATCTGGATTAAAATGGCTTTGTTCCCCAACAAATCCA
CCAACACAGAGAGACGACGCTATGCAGCAGATTGTAGCAGGAGTTGCCGCTGTAGAAAACCGGATTCATTCGTTCTTTCATAATCAGGGCCTCGGCCTGT
TTCTTCGGCAAAGCAACATCAGGAAAGAAAAGGGTGTTTGCCTCGACACCTTATTCCAGTTCATGCTTGCTCTTGCCTTTACCGGCAAGAACCTTTTCCG
GCTGATCGAGAGCGCAGATACTCCGGAAGGTATCGGCAAAGACACGGTATACCGGTTGCTGAACTCGATTACTGCCAACTGGCGCCGTTTTCTGCTTCTG
CTCAGCGCGCGGGTCATTGTCCAGCGATTGCTTCCCCTGACTGATGAGACAACAACCAAAGTGCTGATCGCTGATGACACCCTGTACAGTCGCGACCGCA
GCAAGTGTGTTGAACTCCTGGCTCGGGTGCATGACCACAATACCGGCCGTTTTATGCGCGGGTTCCGGATGCTCACCCTGGGGTGGTCCGATGGTAACAG
CTTTGTCCCCATGGCGCTCTCGATGCTCAGTTCGGCGAAAGAAAAGAACCGTCTTGCTCCGATGCACGACGGAATCGACAAACGGACCAACGGCTACAAG
CGCCGCCAGGAAAGCATGAGGAAATCCACCGATGTGCTGGTGGATATGGTTTCCTTAGTCATGACGGCAGGGACCAAGGCCCAGCCTCTGCTCCTCGACA
GTTGGTTCGCCTTTCCTGCCACCATAAGACGGATAAAGGCTTTGGGTATGCACACCGTCTGCATGCTCAAGGACACGGGAAAGGTCACTTATGAGATGCA
AGGATGGCCGCTTTCCCTGAAAGAGCTGTACAAATCCGTCCGCAAACGATGCGGTCGTGCCAAGGTGCTGGCCGAAGTACTGGTGACCATAGGCTCAGCC
GATCAGGGCATTCCCGTGCCGGCAAAGATAGTGTTCGTCCGCGACCGGAATTCGAAGAGATGGCTGGCGCTTCTTTCCACCGACACGACCTTGACCGCCG
AAGAGATTATCAAACTCTATCGGCGTCGCTGGGACATAGAGGTGTTTTTCAAAATGGCCAAGTCGTTTCTGAATCTGGCAAAGGAGTTCCAGAGCCGATC
CTTCGACGCCCTGATTGCCCATGCCACACTGGTCTGCTGCCGCTACATCATGCTGGAGCTGGCAAAACGGGAGAATGCCGATCCCCGGACACTCGGAAGT
CTGTTTCACGCTGTCTGCGACGAAATGCGGCAGATTGTCTATACAGAAGCATTGGCATTGTTGCTCAAGTTACTGGAAGAAACCTTGAACAGCGTTATCG
GGTTGTGCAAAGAACAGGTGAAGCAACTGATTGAGCGATTTGTTGAGACACTACCAGCTATTTTCAGAGAGCGATTGTTACTTTTGACTCAGTAATGAGC
ATAAATACATGCTCTATCAAGCGGTTACGGGTAAATCATCAACTGCGAAAGTTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1374 bp457 aa1221495+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQQIVAGVAAVENRIHSFFHNQGLGLFLRQSNIRKEKGVCLDTLFQFMLALAFTGKNLFRLIESADTPEGIGKDTVYRLLNSITANWRRFLLLLSARVIV
QRLLPLTDETTTKVLIADDTLYSRDRSKCVELLARVHDHNTGRFMRGFRMLTLGWSDGNSFVPMALSMLSSAKEKNRLAPMHDGIDKRTNGYKRRQESMR
KSTDVLVDMVSLVMTAGTKAQPLLLDSWFAFPATIRRIKALGMHTVCMLKDTGKVTYEMQGWPLSLKELYKSVRKRCGRAKVLAEVLVTIGSADQGIPVP
AKIVFVRDRNSKRWLALLSTDTTLTAEEIIKLYRRRWDIEVFFKMAKSFLNLAKEFQSRSFDALIAHATLVCCRYIMLELAKRENADPRTLGSLFHAVCD
EMRQIVYTEALALLLKLLEETLNSVIGLCKEQVKQLIERFVETLPAIFRERLLLLTQ

 

Blast result :
Comments
Accession number : NZ_AAJH01000015 Genome in progress.ISPepr1 is 61% aa similar to ISL5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank