ISPepr1
- Family IS4
- Group ISPepr1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pelobacter propionicus | Pelobacter propionicus DSM 2379 |
DNA section
IS Length : 1556 bp
Ends
IR Length : 17
IRL : CTCAACTTTCGCAGTTGGTATAAATACGCAAAATATTGTAATTATTAATA
IRR : CTCAACTTTCGCAGTTGATGATTTACCCGTAACCGCTTGATAGAGCATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTACACAATTCCTGTTAA | TTA | ACATTTAGCCCGAGTAAAGC | 3 |
DNA sequence
CTCAACTTTCGCAGTTGGTATAAATACGCAAAATATTGTAATTATTAATAGTATAGCGTCGTAATCTGGATTAAAATGGCTTTGTTCCCCAACAAATCCA
CCAACACAGAGAGACGACGCTATGCAGCAGATTGTAGCAGGAGTTGCCGCTGTAGAAAACCGGATTCATTCGTTCTTTCATAATCAGGGCCTCGGCCTGT
TTCTTCGGCAAAGCAACATCAGGAAAGAAAAGGGTGTTTGCCTCGACACCTTATTCCAGTTCATGCTTGCTCTTGCCTTTACCGGCAAGAACCTTTTCCG
GCTGATCGAGAGCGCAGATACTCCGGAAGGTATCGGCAAAGACACGGTATACCGGTTGCTGAACTCGATTACTGCCAACTGGCGCCGTTTTCTGCTTCTG
CTCAGCGCGCGGGTCATTGTCCAGCGATTGCTTCCCCTGACTGATGAGACAACAACCAAAGTGCTGATCGCTGATGACACCCTGTACAGTCGCGACCGCA
GCAAGTGTGTTGAACTCCTGGCTCGGGTGCATGACCACAATACCGGCCGTTTTATGCGCGGGTTCCGGATGCTCACCCTGGGGTGGTCCGATGGTAACAG
CTTTGTCCCCATGGCGCTCTCGATGCTCAGTTCGGCGAAAGAAAAGAACCGTCTTGCTCCGATGCACGACGGAATCGACAAACGGACCAACGGCTACAAG
CGCCGCCAGGAAAGCATGAGGAAATCCACCGATGTGCTGGTGGATATGGTTTCCTTAGTCATGACGGCAGGGACCAAGGCCCAGCCTCTGCTCCTCGACA
GTTGGTTCGCCTTTCCTGCCACCATAAGACGGATAAAGGCTTTGGGTATGCACACCGTCTGCATGCTCAAGGACACGGGAAAGGTCACTTATGAGATGCA
AGGATGGCCGCTTTCCCTGAAAGAGCTGTACAAATCCGTCCGCAAACGATGCGGTCGTGCCAAGGTGCTGGCCGAAGTACTGGTGACCATAGGCTCAGCC
GATCAGGGCATTCCCGTGCCGGCAAAGATAGTGTTCGTCCGCGACCGGAATTCGAAGAGATGGCTGGCGCTTCTTTCCACCGACACGACCTTGACCGCCG
AAGAGATTATCAAACTCTATCGGCGTCGCTGGGACATAGAGGTGTTTTTCAAAATGGCCAAGTCGTTTCTGAATCTGGCAAAGGAGTTCCAGAGCCGATC
CTTCGACGCCCTGATTGCCCATGCCACACTGGTCTGCTGCCGCTACATCATGCTGGAGCTGGCAAAACGGGAGAATGCCGATCCCCGGACACTCGGAAGT
CTGTTTCACGCTGTCTGCGACGAAATGCGGCAGATTGTCTATACAGAAGCATTGGCATTGTTGCTCAAGTTACTGGAAGAAACCTTGAACAGCGTTATCG
GGTTGTGCAAAGAACAGGTGAAGCAACTGATTGAGCGATTTGTTGAGACACTACCAGCTATTTTCAGAGAGCGATTGTTACTTTTGACTCAGTAATGAGC
ATAAATACATGCTCTATCAAGCGGTTACGGGTAAATCATCAACTGCGAAAGTTGAG
CCAACACAGAGAGACGACGCTATGCAGCAGATTGTAGCAGGAGTTGCCGCTGTAGAAAACCGGATTCATTCGTTCTTTCATAATCAGGGCCTCGGCCTGT
TTCTTCGGCAAAGCAACATCAGGAAAGAAAAGGGTGTTTGCCTCGACACCTTATTCCAGTTCATGCTTGCTCTTGCCTTTACCGGCAAGAACCTTTTCCG
GCTGATCGAGAGCGCAGATACTCCGGAAGGTATCGGCAAAGACACGGTATACCGGTTGCTGAACTCGATTACTGCCAACTGGCGCCGTTTTCTGCTTCTG
CTCAGCGCGCGGGTCATTGTCCAGCGATTGCTTCCCCTGACTGATGAGACAACAACCAAAGTGCTGATCGCTGATGACACCCTGTACAGTCGCGACCGCA
GCAAGTGTGTTGAACTCCTGGCTCGGGTGCATGACCACAATACCGGCCGTTTTATGCGCGGGTTCCGGATGCTCACCCTGGGGTGGTCCGATGGTAACAG
CTTTGTCCCCATGGCGCTCTCGATGCTCAGTTCGGCGAAAGAAAAGAACCGTCTTGCTCCGATGCACGACGGAATCGACAAACGGACCAACGGCTACAAG
CGCCGCCAGGAAAGCATGAGGAAATCCACCGATGTGCTGGTGGATATGGTTTCCTTAGTCATGACGGCAGGGACCAAGGCCCAGCCTCTGCTCCTCGACA
GTTGGTTCGCCTTTCCTGCCACCATAAGACGGATAAAGGCTTTGGGTATGCACACCGTCTGCATGCTCAAGGACACGGGAAAGGTCACTTATGAGATGCA
AGGATGGCCGCTTTCCCTGAAAGAGCTGTACAAATCCGTCCGCAAACGATGCGGTCGTGCCAAGGTGCTGGCCGAAGTACTGGTGACCATAGGCTCAGCC
GATCAGGGCATTCCCGTGCCGGCAAAGATAGTGTTCGTCCGCGACCGGAATTCGAAGAGATGGCTGGCGCTTCTTTCCACCGACACGACCTTGACCGCCG
AAGAGATTATCAAACTCTATCGGCGTCGCTGGGACATAGAGGTGTTTTTCAAAATGGCCAAGTCGTTTCTGAATCTGGCAAAGGAGTTCCAGAGCCGATC
CTTCGACGCCCTGATTGCCCATGCCACACTGGTCTGCTGCCGCTACATCATGCTGGAGCTGGCAAAACGGGAGAATGCCGATCCCCGGACACTCGGAAGT
CTGTTTCACGCTGTCTGCGACGAAATGCGGCAGATTGTCTATACAGAAGCATTGGCATTGTTGCTCAAGTTACTGGAAGAAACCTTGAACAGCGTTATCG
GGTTGTGCAAAGAACAGGTGAAGCAACTGATTGAGCGATTTGTTGAGACACTACCAGCTATTTTCAGAGAGCGATTGTTACTTTTGACTCAGTAATGAGC
ATAAATACATGCTCTATCAAGCGGTTACGGGTAAATCATCAACTGCGAAAGTTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1374 bp | 457 aa | 122 | 1495 | + | No |
Chemistry : DDE
ORF sequence :
MQQIVAGVAAVENRIHSFFHNQGLGLFLRQSNIRKEKGVCLDTLFQFMLALAFTGKNLFRLIESADTPEGIGKDTVYRLLNSITANWRRFLLLLSARVIV
QRLLPLTDETTTKVLIADDTLYSRDRSKCVELLARVHDHNTGRFMRGFRMLTLGWSDGNSFVPMALSMLSSAKEKNRLAPMHDGIDKRTNGYKRRQESMR
KSTDVLVDMVSLVMTAGTKAQPLLLDSWFAFPATIRRIKALGMHTVCMLKDTGKVTYEMQGWPLSLKELYKSVRKRCGRAKVLAEVLVTIGSADQGIPVP
AKIVFVRDRNSKRWLALLSTDTTLTAEEIIKLYRRRWDIEVFFKMAKSFLNLAKEFQSRSFDALIAHATLVCCRYIMLELAKRENADPRTLGSLFHAVCD
EMRQIVYTEALALLLKLLEETLNSVIGLCKEQVKQLIERFVETLPAIFRERLLLLTQ
QRLLPLTDETTTKVLIADDTLYSRDRSKCVELLARVHDHNTGRFMRGFRMLTLGWSDGNSFVPMALSMLSSAKEKNRLAPMHDGIDKRTNGYKRRQESMR
KSTDVLVDMVSLVMTAGTKAQPLLLDSWFAFPATIRRIKALGMHTVCMLKDTGKVTYEMQGWPLSLKELYKSVRKRCGRAKVLAEVLVTIGSADQGIPVP
AKIVFVRDRNSKRWLALLSTDTTLTAEEIIKLYRRRWDIEVFFKMAKSFLNLAKEFQSRSFDALIAHATLVCCRYIMLELAKRENADPRTLGSLFHAVCD
EMRQIVYTEALALLLKLLEETLNSVIGLCKEQVKQLIERFVETLPAIFRERLLLLTQ
Blast result :
Comments
Accession number : NZ_AAJH01000015 Genome in progress.ISPepr1 is 61% aa similar to ISL5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Direct submission GenBank