ISGur1

  • Family IS4
  • Group ISPepr1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAON01000073 ND Geobacter uraniumreducens
Geobacter uraniumreducens Rf4
DNA section
IS Length : 1556 bp

Ends


IR Length : 13

IRL : CTCAACTTTCGCAGCTGGTAAATATATGTAACATATTGTAATTATTAATA
IRR : CTCAACTTTCGCACTAGCGAGATTGGCCGTAACTAGTTGACAGATATATG

Insertion site


Left flankDirect repeatRight flankDR Length
CAGTAGTTTCGCTTATTTGTAATATTTGAGAAATATC7

DNA sequence

CTCAACTTTCGCAGCTGGTAAATATATGTAACATATTGTAATTATTAATAGTATAGCGTCGCAATCTGGGTTAAAATGGCTTTGTTCCCCAACAAATCCA
CTAGCACAGAGAGACGACGCTATGCAGCAGATTGTAGCAGGATTTGCATCCGTAGAAAACCGGATTCATTCGTTCTTTCACAATCAGAACCTCGGCCAGT
TACTTCGGCAAAGCAATGTCAGGAAGGAAAAGGGCGTTAGCCTCGACACCTTGTTCCAGCTTTTGCTTTCCCTTGCCTTTACCGGAAAAAATCTGTTCCG
TCTCCTGGAGAGTCCAGATTCACCGGATGGTATCGGTAAAGACACTGCGTATCGGCTGTTGAACTCGGTCAATGCCAACTGGCGCCGTTTTCTGTTGCTG
CTCAGCACGCGGGTCATTGTCCAAAGGCTTCTCCCGCTGACCGATGAGACGACCACCAAGGTGCTGATCGCTGACGACACTCTGTATCGTCGCGACCGCA
GCAAGCGGGTCGAACTGCTGGCACGGGTGCATGACCACAACACCGGTCGTTACGTGCGTGGCTTCAGGATGCTCACCCTGGGGTGGTCCGATGGGAACAG
CTTTGTACCCATGATGCTGTCGATGCTCAGCTCTGCCAAGGATAAGAACCGCCTTGCCCCAATGCGTGAGGGCATCGATAAGCGCACCAACGGATATCAG
CGCCGCCGGGAGAGCATGAGGAAATCCACCGACGTACTGGTGGACATGGTTGCCTTGGCAATGAAGGCAGGAACCACTGCCCGGCACCTGCTCTTTGACA
GCTGGTTTGCTTTCCCCGCCACCATCAGGCGGATCCGCGCCCTGGGGATGCATACCATCTGCATGCTCAAGGATACGGGTAAGGTCACCTACGAGGTGCA
GGGGTGGCCGTTCACCCTGAAAGAACTATTCAAAGAGGTCCGCAAGCGACCCGGTCGAGCCAAAGTGTTGGCAGAGGTGCTGGTGACCATAGGTCAAGAC
ATTCACGGTAAACCGGTGGCAGCAAAGATCGTGTTCGTCCGCGACCGCAGTTCGAAGAAATGGCTGGCGCTCCTTTCCACCGATACGACCTTGACCGCCG
AGGAGATCATCACGCTCTACGGCCGTCGCTGGGACATCGAGGTGTTCTTCAAAATGGCCAAGTCGTTTCTGAATCTGGCAAAGGAGTTCCAGAGTCGTTC
CTTCGATGCTCTGGTCGCCCACGCCACACTGGTCTGCTGCCGCTACATTCTGCTTGAGCTGGTGAAACGGGAAAATGCTGATCCTCGAACTCTTGGCAGC
CTGTTTCACGCTCTATGCGATGAAATAAGACGAATTGGCTTCACAGAAGCAATGGCACTGTTGCTCACATTTCTGGAAGAATCACTCAACAGCATTATTG
GATTGTGCAAAGAGCAGGTGCAACAACTGATACAACGCTTTATAGAAACACTACCAAGAGCTTTCAGGGAGCGAATGCTACTTTTGGCCCCGGTATGCAG
CTAAACCATATATCTGTCAACTAGTTACGGCCAATCTCGCTAGTGCGAAAGTTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa1221504+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQQIVAGFASVENRIHSFFHNQNLGQLLRQSNVRKEKGVSLDTLFQLLLSLAFTGKNLFRLLESPDSPDGIGKDTAYRLLNSVNANWRRFLLLLSTRVIV
QRLLPLTDETTTKVLIADDTLYRRDRSKRVELLARVHDHNTGRYVRGFRMLTLGWSDGNSFVPMMLSMLSSAKDKNRLAPMREGIDKRTNGYQRRRESMR
KSTDVLVDMVALAMKAGTTARHLLFDSWFAFPATIRRIRALGMHTICMLKDTGKVTYEVQGWPFTLKELFKEVRKRPGRAKVLAEVLVTIGQDIHGKPVA
AKIVFVRDRSSKKWLALLSTDTTLTAEEIITLYGRRWDIEVFFKMAKSFLNLAKEFQSRSFDALVAHATLVCCRYILLELVKRENADPRTLGSLFHALCD
EIRRIGFTEAMALLLTFLEESLNSIIGLCKEQVQQLIQRFIETLPRAFRERMLLLAPVCS

 

Blast result :
Comments
ISGur1 is 62% aa similar to ISL5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.