ISDha5
- Family IS4
- Group ISPepr1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 |
DNA section
IS Length : 1509 bp
Ends
IR Length : 13
IRL : CTCAACTTTCGCAGCGCGAAAATCTGTTCAAACTCAGTCTACTACTGGAT
IRR : CTCAACTTTCGCACCCCAGTTGAGGGAATAGAGCCTTGATATAACTGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGGGATTTG | ATCATCGT | GATTTATCAT | 8 |
DNA sequence
CTCAACTTTCGCAGCGCGAAAATCTGTTCAAACTCAGTCTACTACTGGATTAGGCTAAAAATATTTTGTTCATTGACAGAAAAACACCTTTCGAATTGGT
AAAATGGAAGTGACCAAACAACCATAATTTCCAAAACAGAAAGGTGCGTATCTCCATGTTACAACACAACTCTCTGCCTGAACAGCATCAAAATCAGCTT
TCTTTAATTTTTTCTTCCCTTAAGCTTAGTCAGCTGCTTCGAGCCGCTGGGATCCGCAAGTCCTATGGGGTTTCAAGCTTCGTTGTCTTCCAAATCATTT
TCCAACTCGTTTTTCAAGGTCGAAATCTGTTTCGGCTGTTAGAAGGAAGCCGGGCAGAATCTCTTCCAGGTAAAGATGTTGTTTATCGGTTTCTCAATGA
CTCTCGGTATAACTGGAGGCGTTTTTACCAGTTACTCAGCCTCAAGATGGTCGGACGCTTTGAAAAGCTCACCTCTGCGCAGCGTATCCGTGTTTTTATC
GTAGATGATTCTGTAATGGAGCGCGAACGAAGCAAGAAAGTTGAACTCTTAGCCCGAGTGTTTGACCATGTTTCGGGCCGCTTTGTTCGCGGTTACACCT
TACTAACCTTGGGCTGGTCTGACGGGTTCAGCTTCGCACCCCTTGATTTTACATTGATGAGTTCTGCAAAAGCTAAAAATCGTCTTTGTGAAATGAGAGA
GGACTTAGACAAACGCTCCGTAGGCTATAAGCGTCGCCTGGAAGCGATGAGCCCTAAACCGGACACCGTGGTTCAAATGCTTGAACGAGCTCTCAAAGCC
GGATTCTCAGCGGATTACGTCCTAATGGATAGTTGGTTTACCCATGCTCCACTTTTGCAAAAGCTAAGGGATAAGGAGCTTCACGTTATTGGAATGGTTA
AAGAACTTAAGCAGCGTTATCTCTTTGAAGGAAAATCACTCAGTTTACGAGAGCTCTACGCGAGAGTCCCAAAGAACCCGAAAGCAGAAATACTGGGTTC
AGTGCGTGTTCATACCCCTTCAGGCTTAGCTTTAAAAGTTGTTTTCGTCCAGAATCGAAACAACCGAAGAGAGTGGTTAGCGATCTTAACCACCGATCTT
TCCTTAGAAACTACTGAAGTCGTAAGAATTTACGGGATGCGTTGGAGTATCGAAACGTTTTTCAAAATGGCCAAATCGCATTTGAAGCTAGGAACTGAAT
TTCAGGGCCGATCCTTCGATATGATGGTTAGTCACACAACCATAGTCTTTACCCGTTACCTCATCCTGGAGTGGGAACGAAGAGAAAACAATGATGAACG
CTCTCTTGGGGGACTCTTTTATCTTTTTGCTGATGAGGTTATGGATTTAGACTTGAAAACAGCACTACGTCAGTTAATGACGTTTGTTCTTAATCTACTA
CCCAATAAACCAGAGAATAACGAATCACTCAGTCAATTACAAAAGTGGATTGCTGCATTACCCAGTTATATCAAGGCTCTATTCCCTCAACTGGGGTGCG
AAAGTTGAG
AAAATGGAAGTGACCAAACAACCATAATTTCCAAAACAGAAAGGTGCGTATCTCCATGTTACAACACAACTCTCTGCCTGAACAGCATCAAAATCAGCTT
TCTTTAATTTTTTCTTCCCTTAAGCTTAGTCAGCTGCTTCGAGCCGCTGGGATCCGCAAGTCCTATGGGGTTTCAAGCTTCGTTGTCTTCCAAATCATTT
TCCAACTCGTTTTTCAAGGTCGAAATCTGTTTCGGCTGTTAGAAGGAAGCCGGGCAGAATCTCTTCCAGGTAAAGATGTTGTTTATCGGTTTCTCAATGA
CTCTCGGTATAACTGGAGGCGTTTTTACCAGTTACTCAGCCTCAAGATGGTCGGACGCTTTGAAAAGCTCACCTCTGCGCAGCGTATCCGTGTTTTTATC
GTAGATGATTCTGTAATGGAGCGCGAACGAAGCAAGAAAGTTGAACTCTTAGCCCGAGTGTTTGACCATGTTTCGGGCCGCTTTGTTCGCGGTTACACCT
TACTAACCTTGGGCTGGTCTGACGGGTTCAGCTTCGCACCCCTTGATTTTACATTGATGAGTTCTGCAAAAGCTAAAAATCGTCTTTGTGAAATGAGAGA
GGACTTAGACAAACGCTCCGTAGGCTATAAGCGTCGCCTGGAAGCGATGAGCCCTAAACCGGACACCGTGGTTCAAATGCTTGAACGAGCTCTCAAAGCC
GGATTCTCAGCGGATTACGTCCTAATGGATAGTTGGTTTACCCATGCTCCACTTTTGCAAAAGCTAAGGGATAAGGAGCTTCACGTTATTGGAATGGTTA
AAGAACTTAAGCAGCGTTATCTCTTTGAAGGAAAATCACTCAGTTTACGAGAGCTCTACGCGAGAGTCCCAAAGAACCCGAAAGCAGAAATACTGGGTTC
AGTGCGTGTTCATACCCCTTCAGGCTTAGCTTTAAAAGTTGTTTTCGTCCAGAATCGAAACAACCGAAGAGAGTGGTTAGCGATCTTAACCACCGATCTT
TCCTTAGAAACTACTGAAGTCGTAAGAATTTACGGGATGCGTTGGAGTATCGAAACGTTTTTCAAAATGGCCAAATCGCATTTGAAGCTAGGAACTGAAT
TTCAGGGCCGATCCTTCGATATGATGGTTAGTCACACAACCATAGTCTTTACCCGTTACCTCATCCTGGAGTGGGAACGAAGAGAAAACAATGATGAACG
CTCTCTTGGGGGACTCTTTTATCTTTTTGCTGATGAGGTTATGGATTTAGACTTGAAAACAGCACTACGTCAGTTAATGACGTTTGTTCTTAATCTACTA
CCCAATAAACCAGAGAATAACGAATCACTCAGTCAATTACAAAAGTGGATTGCTGCATTACCCAGTTATATCAAGGCTCTATTCCCTCAACTGGGGTGCG
AAAGTTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 450 aa | 156 | 1505 | + | No |
Chemistry : DDE
ORF sequence :
MLQHNSLPEQHQNQLSLIFSSLKLSQLLRAAGIRKSYGVSSFVVFQIIFQLVFQGRNLFRLLEGSRAESLPGKDVVYRFLNDSRYNWRRFYQLLSLKMVG
RFEKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSFAPLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSP
KPDTVVQMLERALKAGFSADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPKAEILGSVRVHTPSGLALKVVFVQN
RNNRREWLAILTTDLSLETTEVVRIYGMRWSIETFFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFADEVMDLDL
KTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES
RFEKLTSAQRIRVFIVDDSVMERERSKKVELLARVFDHVSGRFVRGYTLLTLGWSDGFSFAPLDFTLMSSAKAKNRLCEMREDLDKRSVGYKRRLEAMSP
KPDTVVQMLERALKAGFSADYVLMDSWFTHAPLLQKLRDKELHVIGMVKELKQRYLFEGKSLSLRELYARVPKNPKAEILGSVRVHTPSGLALKVVFVQN
RNNRREWLAILTTDLSLETTEVVRIYGMRWSIETFFKMAKSHLKLGTEFQGRSFDMMVSHTTIVFTRYLILEWERRENNDERSLGGLFYLFADEVMDLDL
KTALRQLMTFVLNLLPNKPENNESLSQLQKWIAALPSYIKALFPQLGCES
Blast result :
Comments
ISDha5 is 65% aa similar to ISDpr2. ISDha5 was found by screening completely sequenced genomes for sequences homologous to the ISGur1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-106-D(N3)-107-E(C1).
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P. and Richardson,P.(2006)Unpublished
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P. and Richardson,P.(2006)Unpublished