ISCku4
- Family IS4
- Group ISPepr1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CT573073 | ND | Candidatus Kuenenia | Candidatus Kuenenia stuttgartiensis |
DNA section
IS Length : 1971 bp
Ends
IR Length : 16/19
IRL : CTTGAGAGTACCGAGTTCTCCATGTTGTGAATCTATTTAATCATATCTAC
IRR : CTTGAGAGTACCGTATTTTACAGTAGGCACTAATCCCATTCTCACGAGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACATTTGTT | TATTGGA | GAAAAGAGGC | 7 |
TTAAAAATAG | TATTAA | AGAAATTAAA | 6 |
ACCAATATTA | TTTCTGA | AGAAATTAAA | 7 |
ATTGAATGTC | TGTTTTA | CATATTCAAC | 7 |
DNA sequence
CTTGAGAGTACCGAGTTCTCCATGTTGTGAATCTATTTAATCATATCTACAATTCTTATTTTTTACAGTACAATTTTAAACTTATTTCGGTTTGTCACGT
TTCGCTAAATGGGCCTTCAATCGTGAATGTTCAATAGAAAGATCTATCCATAATTCAATCAATTTTTTAAACTCTTTATATGTTTTTAACAGTTGCTTTG
TCTCATCGACAAACGAAGGCCTGACGTATTCCGTCCTGCTTTTCATTTTATGGGTAAAACTGAGTTGATAATATGCCCCCTTTTTCCCCGCAGGGTCCTT
ATATTGTTTACTCAGACTACCTGGTCTCATTTCATTAATTGACTGAAGTTTCTTTTTGATTTTTTTAATCTTCTCTTCAATTTGTTGTAGCTTTTTTATT
GACATATATGTAGCATATACAGGCTACATCAATACGTCAACAATAATTTTAAGAGGAGGAAGATTTATGAAGCTTTGGATTCTGTGGTGGAGCACGGTCT
GGCAACTACGCCCAGCCTGCTCTCGCCTGAGAAACTTTTTATGGTTTGCTACAGTTTTAGCCGGAATTACCGTTCGGCCTGATTTGCTCGGGGTGTCTAG
TATTATACGTGGACTCGGCCTTAAGGGGTATTGTTATGACCGCCTTTTGGATTTTTTTCATAGCAATGCACTAAATGTTGAGAAACTAACCAAACTATGG
ACAAAGCTTATTATAAAAACACATCCGCAGGTAAAGCGTTTTCGCGGGAAATTGCTTTTATGCGGGGATGGCCTTAAGGTGCCAAAAGAAGGCAAAAAGA
TGCCTGGTGTAAAGTCATTGCATCAGGAATCTGACTCGAATAACAAGGCAGAGTACATTATGGGCCATTCCTGTCAGGTTGTTTCTCTTTTAGCTGAAGC
CGGGAAAAGTTGTTTTGCTATTCCACTGGTGAGCAGAATTCATGAAGGCGTTGTCTTTTCAAACAGAGACCAAAGAACCTTACTCGACAAAATGGTTTTG
TTGATTAATTCTCTGGAGCTGAAAGAATTGTTCTACTTTATTGCAGACGCCTATTACGCATCCCATGCTATTATTAATGGCGTAGTTGCCCGGGGCAGCC
ACTTGATTAGCAGGGTAAGGAGTAATGCCGTTGCATACTTTCCCGTGGAACCGACTCCTGAAAAGAAAGGACGTGGACGACCCAAAAAATATGGTATGAA
AGTAAAATTAAAAACATTGTTGAATGATCGCGCATCAATGAAGGAGGCGGAAAGTCCGGTTTATGGAGAGCAAGGCATAAAAATAAATTATAGAACCCTT
GATCTGCTTTGGAAACCTGTGGGTATTCTTATTAGATTTGTATTGGTGGATCACCCTCAAAGAGGGAAAATTATTTTAATGAGTACGGATTTAACTATTA
GTGCAATGGAAATTATCTGCCTGTATGGATTACGTTTCAAAATCGAAGTGTCTTTCAAACAGGCGCTTAGAACCTTGGGCACATATGCCTACCATTTCTG
GATGAGAAACATGCAGCCAATTAAAAGGCGTTCCGGCAATCAACATGTACACAAAAGAAGCGCTGAATACAGAAATGCAGTTCGCAGAAAACTTGCAGCC
TATCACAGACATATACAGGCCGGCGTTATTGCACAGGGGCTTTTGCAATATATTTCTTCAGCATTTCCATCGCTTGTTTGGAATTCCTTCGGGTCTTGGT
TGCGGACTATGAGGCCGGGAATTTGTCCTTCAGAACAAGTAACGGCCATTGCAATGAGAAATTGCCTTCCTGAATTTCTCGTGGATTCATCTCAAAAGTC
AATCCTTACAAAATTTATTCTTGAACGAATCGATTTTTCCAGGGCAGAAGGGGCTCGATTGGTCGCATAGTTGCTTTTACTACACTTTTTAACTATTTTA
TTTTCACTCACAAGGTATTTTTACTCGTGAGAATGGGATTAGTGCCTACTGTAAAATACGGTACTCTCAAG
TTCGCTAAATGGGCCTTCAATCGTGAATGTTCAATAGAAAGATCTATCCATAATTCAATCAATTTTTTAAACTCTTTATATGTTTTTAACAGTTGCTTTG
TCTCATCGACAAACGAAGGCCTGACGTATTCCGTCCTGCTTTTCATTTTATGGGTAAAACTGAGTTGATAATATGCCCCCTTTTTCCCCGCAGGGTCCTT
ATATTGTTTACTCAGACTACCTGGTCTCATTTCATTAATTGACTGAAGTTTCTTTTTGATTTTTTTAATCTTCTCTTCAATTTGTTGTAGCTTTTTTATT
GACATATATGTAGCATATACAGGCTACATCAATACGTCAACAATAATTTTAAGAGGAGGAAGATTTATGAAGCTTTGGATTCTGTGGTGGAGCACGGTCT
GGCAACTACGCCCAGCCTGCTCTCGCCTGAGAAACTTTTTATGGTTTGCTACAGTTTTAGCCGGAATTACCGTTCGGCCTGATTTGCTCGGGGTGTCTAG
TATTATACGTGGACTCGGCCTTAAGGGGTATTGTTATGACCGCCTTTTGGATTTTTTTCATAGCAATGCACTAAATGTTGAGAAACTAACCAAACTATGG
ACAAAGCTTATTATAAAAACACATCCGCAGGTAAAGCGTTTTCGCGGGAAATTGCTTTTATGCGGGGATGGCCTTAAGGTGCCAAAAGAAGGCAAAAAGA
TGCCTGGTGTAAAGTCATTGCATCAGGAATCTGACTCGAATAACAAGGCAGAGTACATTATGGGCCATTCCTGTCAGGTTGTTTCTCTTTTAGCTGAAGC
CGGGAAAAGTTGTTTTGCTATTCCACTGGTGAGCAGAATTCATGAAGGCGTTGTCTTTTCAAACAGAGACCAAAGAACCTTACTCGACAAAATGGTTTTG
TTGATTAATTCTCTGGAGCTGAAAGAATTGTTCTACTTTATTGCAGACGCCTATTACGCATCCCATGCTATTATTAATGGCGTAGTTGCCCGGGGCAGCC
ACTTGATTAGCAGGGTAAGGAGTAATGCCGTTGCATACTTTCCCGTGGAACCGACTCCTGAAAAGAAAGGACGTGGACGACCCAAAAAATATGGTATGAA
AGTAAAATTAAAAACATTGTTGAATGATCGCGCATCAATGAAGGAGGCGGAAAGTCCGGTTTATGGAGAGCAAGGCATAAAAATAAATTATAGAACCCTT
GATCTGCTTTGGAAACCTGTGGGTATTCTTATTAGATTTGTATTGGTGGATCACCCTCAAAGAGGGAAAATTATTTTAATGAGTACGGATTTAACTATTA
GTGCAATGGAAATTATCTGCCTGTATGGATTACGTTTCAAAATCGAAGTGTCTTTCAAACAGGCGCTTAGAACCTTGGGCACATATGCCTACCATTTCTG
GATGAGAAACATGCAGCCAATTAAAAGGCGTTCCGGCAATCAACATGTACACAAAAGAAGCGCTGAATACAGAAATGCAGTTCGCAGAAAACTTGCAGCC
TATCACAGACATATACAGGCCGGCGTTATTGCACAGGGGCTTTTGCAATATATTTCTTCAGCATTTCCATCGCTTGTTTGGAATTCCTTCGGGTCTTGGT
TGCGGACTATGAGGCCGGGAATTTGTCCTTCAGAACAAGTAACGGCCATTGCAATGAGAAATTGCCTTCCTGAATTTCTCGTGGATTCATCTCAAAAGTC
AATCCTTACAAAATTTATTCTTGAACGAATCGATTTTTCCAGGGCAGAAGGGGCTCGATTGGTCGCATAGTTGCTTTTACTACACTTTTTAACTATTTTA
TTTTCACTCACAAGGTATTTTTACTCGTGAGAATGGGATTAGTGCCTACTGTAAAATACGGTACTCTCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1401 bp | 467 aa | 467 | 1867 | + | No |
Chemistry : DDE
ORF sequence :
MKLWILWWSTVWQLRPACSRLRNFLWFATVLAGITVRPDLLGVSSIIRGLGLKGYCYDRLLDFFHSNALNVEKLTKLWTKLIIKTHPQVKRFRGKLLLCG
DGLKVPKEGKKMPGVKSLHQESDSNNKAEYIMGHSCQVVSLLAEAGKSCFAIPLVSRIHEGVVFSNRDQRTLLDKMVLLINSLELKELFYFIADAYYASH
AIINGVVARGSHLISRVRSNAVAYFPVEPTPEKKGRGRPKKYGMKVKLKTLLNDRASMKEAESPVYGEQGIKINYRTLDLLWKPVGILIRFVLVDHPQRG
KIILMSTDLTISAMEIICLYGLRFKIEVSFKQALRTLGTYAYHFWMRNMQPIKRRSGNQHVHKRSAEYRNAVRRKLAAYHRHIQAGVIAQGLLQYISSAF
PSLVWNSFGSWLRTMRPGICPSEQVTAIAMRNCLPEFLVDSSQKSILTKFILERIDFSRAEGARLVA
DGLKVPKEGKKMPGVKSLHQESDSNNKAEYIMGHSCQVVSLLAEAGKSCFAIPLVSRIHEGVVFSNRDQRTLLDKMVLLINSLELKELFYFIADAYYASH
AIINGVVARGSHLISRVRSNAVAYFPVEPTPEKKGRGRPKKYGMKVKLKTLLNDRASMKEAESPVYGEQGIKINYRTLDLLWKPVGILIRFVLVDHPQRG
KIILMSTDLTISAMEIICLYGLRFKIEVSFKQALRTLGTYAYHFWMRNMQPIKRRSGNQHVHKRSAEYRNAVRRKLAAYHRHIQAGVIAQGLLQYISSAF
PSLVWNSFGSWLRTMRPGICPSEQVTAIAMRNCLPEFLVDSSQKSILTKFILERIDFSRAEGARLVA
Blast result :
Comments
ISCku4 is 46% aa similar to ISDra7. ISCku4 was found by screening completely sequenced genomes for sequences homologous to the ISGur1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-92-D(N3)-132-E(C1). The copy number on the Candidatus Kuenenia stuttgartiensis chromosome is 4. One copy lies on fragment 5 (Accession: CT573071).
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D.(2006)Nature 440 (7085), 790-794
2] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D.(2006)Nature 440 (7085), 790-794