ISPhsp1
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Photobacterium sp. | Photobacterium sp. SKA34 |
DNA section
IS Length : 1425 bp
Ends
IR Length : 15/18
IRL : TAATGCCGATCGTTTAAGGTACTTGAACGATCCTAAGATCGCGTGATAAT
IRR : TAATGCCGTTCGGATAAGCATCATCGTTTATACCTAAACGGATACTTGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAAAGGCA | GATCATATGATC | TGCCTTTTTT | 12 |
DNA sequence
TAATGCCGATCGTTTAAGGTACTTGAACGATCCTAAGATCGCGTGATAATCCCTACCAACTTTTGTTGGTAGGGATTTTTATATGTTATTTGATGAGTTA
AACCAAGCGCATGAAACGATAGAAAATAGTAGTAACTATGAGTCTGTTGTCAATGCTATTGAGATGGAATGGATTGAACAGGCTCTTCATAATACTAACA
AAGCAAGTATTCGGCGTCGCCGATTACCAGCTCAACAAGCCGTATGGCTCGTCATTTGGATGGGTTTGCAACGCAACAAATCTATCAAGGAAGTATGCAG
CTCTCTAGACTTAGCTCTTCAACCTCAACCAGAGAATAGTTGGTCTAGAGTTGCGCCTAGTGTTCTCACGGACAGTCGACGTCGATTGGATGAGGCTCCC
TTAGCCGCACTTTTTAAGACAGCTATTTCGGCATGGAAAGCCGATGCACTTCAGCTAAACAGCGTCCTAAAACTCAATGTTCTTGCTGTCGACGGTACGA
CTTTTCGATGTCCTGACTCAGAAGAAAATGCTGAATCATTTGGCTTCATTTCTAAGAGCTACAAACCTTACCCTCAGCTTCGATTAGTTGGACTGATGGC
TGCTGAAACTCGCATGATGCTGGGCGCATCGTTTGATGCGTGCAATGTTGGTGAAGCGACATTAGCGCATCGCCTGCTAACAGATGTTCCCTGTAATTCA
CTAACCTTATTCGACCGTTGCTATTTCTCTGCAGATTTACTAATTAACTGGCAAAAAGCGGCAACTAACAGTCACTGGTTAACACCAATAAAGCGTAAGC
TTCGTTATGAAGTTCTTGAGGAATACGCTCACAACGACATGCTCATCGAGATGCCAATATCGCCGCAGGCGAGAAAGAAGAACTCTGAGCTGCCTGACAC
CTGGCAAGCAAGGCTTATACTGTACAAAGATCCTGCGGGTGAAATTGAAGGTTTTATTACCTCTTTGGTAGACCCAAATCAATACCCACTCGAAGAGCTA
CTGCGTATCTACTGGCAGCGTTGGGAGATAGAAGAAGGCTTTGGTGAGATAAAACAAACTCAGTTGCAAAGCGAAGTTACCCTGAGGAGTCGGTTCCCAT
CTGGAGTAAAACAAGAACTCTGGGGGGTGTTGCTAGCATATAACTTAGTGCGACTAGAAATGGTACAGATAGCCGCAGATGCAGATGTGAAGCCGACTCG
AGTGAGTTTTACGGCAGCAATTAACCTCATTGACAACCAGCTTAGGTGGTTAGCATTAAGTCCAGATGGAACACTCCCAGCGAAGCTCAAGCAAATGCGT
GAGGCCGTGAGCCACTTTATTCTTCCAGATAAAAGAAAGGACCGAACGTTTCCACGTTCAGTCCTGTTTGTGCCATCCAAGTATCCGTTTAGGTATAAAC
GATGATGCTTATCCGAACGGCATTA
AACCAAGCGCATGAAACGATAGAAAATAGTAGTAACTATGAGTCTGTTGTCAATGCTATTGAGATGGAATGGATTGAACAGGCTCTTCATAATACTAACA
AAGCAAGTATTCGGCGTCGCCGATTACCAGCTCAACAAGCCGTATGGCTCGTCATTTGGATGGGTTTGCAACGCAACAAATCTATCAAGGAAGTATGCAG
CTCTCTAGACTTAGCTCTTCAACCTCAACCAGAGAATAGTTGGTCTAGAGTTGCGCCTAGTGTTCTCACGGACAGTCGACGTCGATTGGATGAGGCTCCC
TTAGCCGCACTTTTTAAGACAGCTATTTCGGCATGGAAAGCCGATGCACTTCAGCTAAACAGCGTCCTAAAACTCAATGTTCTTGCTGTCGACGGTACGA
CTTTTCGATGTCCTGACTCAGAAGAAAATGCTGAATCATTTGGCTTCATTTCTAAGAGCTACAAACCTTACCCTCAGCTTCGATTAGTTGGACTGATGGC
TGCTGAAACTCGCATGATGCTGGGCGCATCGTTTGATGCGTGCAATGTTGGTGAAGCGACATTAGCGCATCGCCTGCTAACAGATGTTCCCTGTAATTCA
CTAACCTTATTCGACCGTTGCTATTTCTCTGCAGATTTACTAATTAACTGGCAAAAAGCGGCAACTAACAGTCACTGGTTAACACCAATAAAGCGTAAGC
TTCGTTATGAAGTTCTTGAGGAATACGCTCACAACGACATGCTCATCGAGATGCCAATATCGCCGCAGGCGAGAAAGAAGAACTCTGAGCTGCCTGACAC
CTGGCAAGCAAGGCTTATACTGTACAAAGATCCTGCGGGTGAAATTGAAGGTTTTATTACCTCTTTGGTAGACCCAAATCAATACCCACTCGAAGAGCTA
CTGCGTATCTACTGGCAGCGTTGGGAGATAGAAGAAGGCTTTGGTGAGATAAAACAAACTCAGTTGCAAAGCGAAGTTACCCTGAGGAGTCGGTTCCCAT
CTGGAGTAAAACAAGAACTCTGGGGGGTGTTGCTAGCATATAACTTAGTGCGACTAGAAATGGTACAGATAGCCGCAGATGCAGATGTGAAGCCGACTCG
AGTGAGTTTTACGGCAGCAATTAACCTCATTGACAACCAGCTTAGGTGGTTAGCATTAAGTCCAGATGGAACACTCCCAGCGAAGCTCAAGCAAATGCGT
GAGGCCGTGAGCCACTTTATTCTTCCAGATAAAAGAAAGGACCGAACGTTTCCACGTTCAGTCCTGTTTGTGCCATCCAAGTATCCGTTTAGGTATAAAC
GATGATGCTTATCCGAACGGCATTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1320 bp | 440 aa | 83 | 1402 | + | No |
Chemistry : DDE
ORF sequence :
MLFDELNQAHETIENSSNYESVVNAIEMEWIEQALHNTNKASIRRRRLPAQQAVWLVIWMGLQRNKSIKEVCSSLDLALQPQPENSWSRVAPSVLTDSRR
RLDEAPLAALFKTAISAWKADALQLNSVLKLNVLAVDGTTFRCPDSEENAESFGFISKSYKPYPQLRLVGLMAAETRMMLGASFDACNVGEATLAHRLLT
DVPCNSLTLFDRCYFSADLLINWQKAATNSHWLTPIKRKLRYEVLEEYAHNDMLIEMPISPQARKKNSELPDTWQARLILYKDPAGEIEGFITSLVDPNQ
YPLEELLRIYWQRWEIEEGFGEIKQTQLQSEVTLRSRFPSGVKQELWGVLLAYNLVRLEMVQIAADADVKPTRVSFTAAINLIDNQLRWLALSPDGTLPA
KLKQMREAVSHFILPDKRKDRTFPRSVLFVPSKYPFRYKR
RLDEAPLAALFKTAISAWKADALQLNSVLKLNVLAVDGTTFRCPDSEENAESFGFISKSYKPYPQLRLVGLMAAETRMMLGASFDACNVGEATLAHRLLT
DVPCNSLTLFDRCYFSADLLINWQKAATNSHWLTPIKRKLRYEVLEEYAHNDMLIEMPISPQARKKNSELPDTWQARLILYKDPAGEIEGFITSLVDPNQ
YPLEELLRIYWQRWEIEEGFGEIKQTQLQSEVTLRSRFPSGVKQELWGVLLAYNLVRLEMVQIAADADVKPTRVSFTAAINLIDNQLRWLALSPDGTLPA
KLKQMREAVSHFILPDKRKDRTFPRSVLFVPSKYPFRYKR
Blast result :
Comments
ISPhsp1 is 88% aa similar to ISVisp1. ISPhsp1 was found by screening completely sequenced genomes for sequences homologous to the ISAva1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-73-D(N3)-105-E(C1). The sequencing of the Photobacterium sp. SKA34 chromosome is currently in progress. Accession: NZ_AAOU00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Hagstrom,A.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Unpublished
2] Hagstrom,A.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Unpublished