ISNpu3
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Nostoc punctiforme | Nostoc punctiforme PCC 73102 |
DNA section
IS Length : 1513 bp
Ends
IR Length : 23/26
IRL : CAATACGGTTCAGTTAAGGCTCAAAGTGATGTAAATTAGGCATTGTTCCC
IRR : CAATACGGTTAAGTTAAAGCTGAAAGCGTTATTAATGATATGGAAATTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTTTTACCC | GGTTATATAGT | 0 |
DNA sequence
CAATACGGTTCAGTTAAGGCTCAAAGTGATGTAAATTAGGCATTGTTCCCAAGAATAGAAATTAAGTATCGTGCATCTGAGGGATTTTTCGTTGGTGTCT
CCTGAGATACAAAACGCTGATTTGCTCAAAGCAATCGAGATGGCTATTCCAGCAACAGCAATTGAACAGGCGATAAGCCTGCGGCATGGCTTCGCTTACC
GCTAATATCCAAACTCAAGAAGAACGCAAACGATCATTACCAGCACAATTGGTGGTAAGCCTTGTAATTGCAATGAGTCTGTGGTCAAAAGACTCGATGC
GGGATGTATTGAAGAATTTGATTGATGGACTCAGTGAGGCATGGCTTAAGGTTGGTAAATACTGGCGAGTAGCTTGTAAGTCAGCCATTACACAAGCCCG
GCAGCGATTAGGTGCAAGGGTAATGTGCAAATTATTTCATCAGCTAGTAAAACCAATGGCGACACAGGAGACATTAGGAGCGTTTCTCCAAGAACTAAGA
ATTGTAGTCATTGATGGCAGCTGTTTTGATGTTCCAGACAGCGATGAAAATGCGAGAGTTTTTGGTCGTCCTGGTAGCCGTCCTGGGACAAAAGCCGCGT
TCCCTAAAGTTAGACTAGTAATATTAGTAGAAGCAGGAACACATATAATATTTGATGCACTGATGTGGCCGTATCGCATCGGAGAGCGAGTACGAGCATT
AAGATTATTACGTTCGGTCACACCAGGAATGTTGTTGATGTGGGATAGAGGATTACATTCCTACGCAATGGTACAAGCAACAGTAACCAAGGGATGCGAT
TATTTAGGCAGAATACCAGCCAATATCAAATTTATTGCCGAAAAACCCTTAGAAGACGGCTCTTATTTATCATGGATTTACCCATCGGGAAAGCTACGAA
AAAAAGCTAGTCAGCCAATACTTGTACGCATCATTGAGTATACAATTGAGCATCCTGACAATCCAACCGAACAACTGACATATCGCTTAATTACTAGTTT
ATTAAACATTGAGAAATTTCCTGCCGAGTTGTTGGCGAGGGAATACCATCAGCGATGGGAAGTAGAAAATACCATTGATGAGTTGAAAATACATCTTCTA
GGGCGAAAAACTCATGTCCGTTCCCAAAAACCACGAGAGGTTGTGCAAGAAGTATATGCTTGGTTATTGGGACATTGGACAGTACGATTATTAATGTTTC
AAGCTGCAACCAGTGCCGGAGTTGCTCCATTACGTCTTAGTTTTACCGGAACTTTACGAGTTATCCGTCGTGCTGTACCTAAGTTTCAACGTCTTAACTC
TCAAGATTTGCCCCTTTTTTTGAGTGGTTGATCATAGAGATTCTGGATACATTGTTACCTGAGCGGCTTCATCGGTGTAACCCCAGGGTTGTGAAAAAAC
CTGTATCAAAGTTTCGCTCCAAAAAACCAAGCCACAGAGGCACTGGACAGCGAGTTGAGGCTCCTAATTTCCATATCATTAATAACGCTTTCAGCTTTAA
CTTAACCGTATTG
CCTGAGATACAAAACGCTGATTTGCTCAAAGCAATCGAGATGGCTATTCCAGCAACAGCAATTGAACAGGCGATAAGCCTGCGGCATGGCTTCGCTTACC
GCTAATATCCAAACTCAAGAAGAACGCAAACGATCATTACCAGCACAATTGGTGGTAAGCCTTGTAATTGCAATGAGTCTGTGGTCAAAAGACTCGATGC
GGGATGTATTGAAGAATTTGATTGATGGACTCAGTGAGGCATGGCTTAAGGTTGGTAAATACTGGCGAGTAGCTTGTAAGTCAGCCATTACACAAGCCCG
GCAGCGATTAGGTGCAAGGGTAATGTGCAAATTATTTCATCAGCTAGTAAAACCAATGGCGACACAGGAGACATTAGGAGCGTTTCTCCAAGAACTAAGA
ATTGTAGTCATTGATGGCAGCTGTTTTGATGTTCCAGACAGCGATGAAAATGCGAGAGTTTTTGGTCGTCCTGGTAGCCGTCCTGGGACAAAAGCCGCGT
TCCCTAAAGTTAGACTAGTAATATTAGTAGAAGCAGGAACACATATAATATTTGATGCACTGATGTGGCCGTATCGCATCGGAGAGCGAGTACGAGCATT
AAGATTATTACGTTCGGTCACACCAGGAATGTTGTTGATGTGGGATAGAGGATTACATTCCTACGCAATGGTACAAGCAACAGTAACCAAGGGATGCGAT
TATTTAGGCAGAATACCAGCCAATATCAAATTTATTGCCGAAAAACCCTTAGAAGACGGCTCTTATTTATCATGGATTTACCCATCGGGAAAGCTACGAA
AAAAAGCTAGTCAGCCAATACTTGTACGCATCATTGAGTATACAATTGAGCATCCTGACAATCCAACCGAACAACTGACATATCGCTTAATTACTAGTTT
ATTAAACATTGAGAAATTTCCTGCCGAGTTGTTGGCGAGGGAATACCATCAGCGATGGGAAGTAGAAAATACCATTGATGAGTTGAAAATACATCTTCTA
GGGCGAAAAACTCATGTCCGTTCCCAAAAACCACGAGAGGTTGTGCAAGAAGTATATGCTTGGTTATTGGGACATTGGACAGTACGATTATTAATGTTTC
AAGCTGCAACCAGTGCCGGAGTTGCTCCATTACGTCTTAGTTTTACCGGAACTTTACGAGTTATCCGTCGTGCTGTACCTAAGTTTCAACGTCTTAACTC
TCAAGATTTGCCCCTTTTTTTGAGTGGTTGATCATAGAGATTCTGGATACATTGTTACCTGAGCGGCTTCATCGGTGTAACCCCAGGGTTGTGAAAAAAC
CTGTATCAAAGTTTCGCTCCAAAAAACCAAGCCACAGAGGCACTGGACAGCGAGTTGAGGCTCCTAATTTCCATATCATTAATAACGCTTTCAGCTTTAA
CTTAACCGTATTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1143 bp | 381 aa | 186 | 1328 | + | No |
Chemistry : DDE
ORF sequence :
MASLTANIQTQEERKRSLPAQLVVSLVIAMSLWSKDSMRDVLKNLIDGLSEAWLKVGKYWRVACKSAITQARQRLGARVMCKLFHQLVKPMATQETLGAF
LQELRIVVIDGSCFDVPDSDENARVFGRPGSRPGTKAAFPKVRLVILVEAGTHIIFDALMWPYRIGERVRALRLLRSVTPGMLLMWDRGLHSYAMVQATV
TKGCDYLGRIPANIKFIAEKPLEDGSYLSWIYPSGKLRKKASQPILVRIIEYTIEHPDNPTEQLTYRLITSLLNIEKFPAELLAREYHQRWEVENTIDEL
KIHLLGRKTHVRSQKPREVVQEVYAWLLGHWTVRLLMFQAATSAGVAPLRLSFTGTLRVIRRAVPKFQRLNSQDLPLFLSG
LQELRIVVIDGSCFDVPDSDENARVFGRPGSRPGTKAAFPKVRLVILVEAGTHIIFDALMWPYRIGERVRALRLLRSVTPGMLLMWDRGLHSYAMVQATV
TKGCDYLGRIPANIKFIAEKPLEDGSYLSWIYPSGKLRKKASQPILVRIIEYTIEHPDNPTEQLTYRLITSLLNIEKFPAELLAREYHQRWEVENTIDEL
KIHLLGRKTHVRSQKPREVVQEVYAWLLGHWTVRLLMFQAATSAGVAPLRLSFTGTLRVIRRAVPKFQRLNSQDLPLFLSG
Blast result :
Comments
ISNpu3 is 49% aa similar to IS1271.
ISNpu3 was found by screening completely sequenced genomes for sequences homologous to the IS4 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-76-D(N3)-106-E(C1).
GENOME IN PROGRESS : Accession number : NZ_AAAY02000149.1
ISNpu3 was found by screening completely sequenced genomes for sequences homologous to the IS4 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-76-D(N3)-106-E(C1).
GENOME IN PROGRESS : Accession number : NZ_AAAY02000149.1
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] NCBI Microbial Genomes Annotation Project(2006)Unpublished.
2] NCBI Microbial Genomes Annotation Project(2006)Unpublished.