ISNmo2
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Nitrococcus mobilis | Nitrococcus mobilis Nb-231 |
DNA section
IS Length : 1529 bp
Ends
IR Length : 20
IRL : TAATACTGCTACCTTAACGACCACAATTGTATATTGATCATGAAGTTGTG
IRR : TAATACTGCTACCTTAACGAATTCGTTGGCCGACGGATGGCTTGGCACGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTTGTTGGA | GGGCTAGATTC | AGCTCATCCA | 11 |
DNA sequence
TAATACTGCTACCTTAACGACCACAATTGTATATTGATCATGAAGTTGTGTGATTATTAAAGGCTAGGCTCTCGGAGCATTTCGGATAGAATTGATTGTG
AGAAAACCCTCCCATCCGATCCCGAGAGCCTAGCCATGAAAAACTCTATTCGCTGCGCCCGCTCATGGCAAATCCAGCGCTTGAAGAGGTCCTTCCTACA
AGTGCGCGGACTGCCGTTTTTCGATGTTTTATCCACCCGTGTGTTGAGCCAGTTCGCCGAACGCGCGTGCGGCGGGCGTGATCGGATATTCACCCCCTTG
GTGGTATTGAAAGCCTTCCTCTTCCAGGTGCTCAGTCAGGACGGTTCGTGCAAACACGCGGTGGCGCGGGTGCTGTCCGAGCGGCTGCAAAGCGGCCAAA
GCGCCAATTCCATCAACACCGGGCCGTATTGCAAAGCCCGCCAACGCCTGCCCCGTGCGCCCTTGGAGAACGCGGTCCGGGAGAGCGGACAGACGCTGCA
CCAACGCGCGCCTTCAGCCTGGGGTTGGCGTGGCCATCGCGTGGTGCTCGCCGATGGCACTACCGCACTGATGCCCGATACGCTCGATAATCAGCGTGAG
TTCCCCCAACAGGGCAACCAACAACCCGGCCTCGGGTTTCCCATCGTGCGCATCGTGGCCCTGATTTCGCTCGGCGCGGGTGCTGTGCTCGATTATGCCC
TCGGCCCTTATCAGGGCAAGGGCAGCGGAGAGAGCTCTTTGTTCAGCACCCTCCTGCACACCCTGCAGCCGGGCGACCTGCTACTCGCCGACCGCTACTA
CTGCACCTACGCGATCATGGCGTTGCTGGTCCACCACGGGGTGCAGGGGCTCTTTCAAAAGCATGCCCAGCGAAAGCCGCATTGGCACCGCGGCGAGCGA
CTCGGCGCCAAGGATCATCTCATTAAATGGGCCAAGCCGCCCCGCAAGCCCGTGTGGATGAGCGCACAAGACTACCTCAAGCTGCCGCCGACGCTGACCA
TTCGCGAGCTGGCAGTCAACGGCATCGTCTACGTCACCACCCTATCGAACCCCAAACGCTACCCCCGCCGCGCCCTGGCCGAGCACTACCGCTCACGCTG
GACGATCGAGTTGGATCTGCGCAGCATCAAAACCGATATGGCCATGGAGCGGCTGCGCTGCAAGAGCCCAGAGCGGGTCAGAAAAGAGATCGCGGCTCAT
TTGTTGGCCTACAATCTCGTGCGCGCCAACTTGAACCGAGCCGCGCAGTGCTTCGAGAAAATCCCGCGCCAACTCAGCTTCAAATCGGCGCTACAATTGC
TCAACAACGCCGCCTCCCAGCTGTTGCTACTGTCTGGAAAGGCACTGCAAGCTTTTGCCACCGCATTGCTGCAGGCGATGGCGTTGTCCCCAATAGGCCG
GCAAAAACGCCTGCCACAACCCCGTGCAGTCAAACGACGCCCTAAGCCCTATCCCTTGCTCACCAGGCCCCGCCATGCGGCGTGCCAAGCCATCCGTCGG
CCAACGAATTCGTTAAGGTAGCAGTATTA
AGAAAACCCTCCCATCCGATCCCGAGAGCCTAGCCATGAAAAACTCTATTCGCTGCGCCCGCTCATGGCAAATCCAGCGCTTGAAGAGGTCCTTCCTACA
AGTGCGCGGACTGCCGTTTTTCGATGTTTTATCCACCCGTGTGTTGAGCCAGTTCGCCGAACGCGCGTGCGGCGGGCGTGATCGGATATTCACCCCCTTG
GTGGTATTGAAAGCCTTCCTCTTCCAGGTGCTCAGTCAGGACGGTTCGTGCAAACACGCGGTGGCGCGGGTGCTGTCCGAGCGGCTGCAAAGCGGCCAAA
GCGCCAATTCCATCAACACCGGGCCGTATTGCAAAGCCCGCCAACGCCTGCCCCGTGCGCCCTTGGAGAACGCGGTCCGGGAGAGCGGACAGACGCTGCA
CCAACGCGCGCCTTCAGCCTGGGGTTGGCGTGGCCATCGCGTGGTGCTCGCCGATGGCACTACCGCACTGATGCCCGATACGCTCGATAATCAGCGTGAG
TTCCCCCAACAGGGCAACCAACAACCCGGCCTCGGGTTTCCCATCGTGCGCATCGTGGCCCTGATTTCGCTCGGCGCGGGTGCTGTGCTCGATTATGCCC
TCGGCCCTTATCAGGGCAAGGGCAGCGGAGAGAGCTCTTTGTTCAGCACCCTCCTGCACACCCTGCAGCCGGGCGACCTGCTACTCGCCGACCGCTACTA
CTGCACCTACGCGATCATGGCGTTGCTGGTCCACCACGGGGTGCAGGGGCTCTTTCAAAAGCATGCCCAGCGAAAGCCGCATTGGCACCGCGGCGAGCGA
CTCGGCGCCAAGGATCATCTCATTAAATGGGCCAAGCCGCCCCGCAAGCCCGTGTGGATGAGCGCACAAGACTACCTCAAGCTGCCGCCGACGCTGACCA
TTCGCGAGCTGGCAGTCAACGGCATCGTCTACGTCACCACCCTATCGAACCCCAAACGCTACCCCCGCCGCGCCCTGGCCGAGCACTACCGCTCACGCTG
GACGATCGAGTTGGATCTGCGCAGCATCAAAACCGATATGGCCATGGAGCGGCTGCGCTGCAAGAGCCCAGAGCGGGTCAGAAAAGAGATCGCGGCTCAT
TTGTTGGCCTACAATCTCGTGCGCGCCAACTTGAACCGAGCCGCGCAGTGCTTCGAGAAAATCCCGCGCCAACTCAGCTTCAAATCGGCGCTACAATTGC
TCAACAACGCCGCCTCCCAGCTGTTGCTACTGTCTGGAAAGGCACTGCAAGCTTTTGCCACCGCATTGCTGCAGGCGATGGCGTTGTCCCCAATAGGCCG
GCAAAAACGCCTGCCACAACCCCGTGCAGTCAAACGACGCCCTAAGCCCTATCCCTTGCTCACCAGGCCCCGCCATGCGGCGTGCCAAGCCATCCGTCGG
CCAACGAATTCGTTAAGGTAGCAGTATTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1383 bp | 461 aa | 136 | 1518 | + | No |
Chemistry : DDE
ORF sequence :
MKNSIRCARSWQIQRLKRSFLQVRGLPFFDVLSTRVLSQFAERACGGRDRIFTPLVVLKAFLFQVLSQDGSCKHAVARVLSERLQSGQSANSINTGPYCK
ARQRLPRAPLENAVRESGQTLHQRAPSAWGWRGHRVVLADGTTALMPDTLDNQREFPQQGNQQPGLGFPIVRIVALISLGAGAVLDYALGPYQGKGSGES
SLFSTLLHTLQPGDLLLADRYYCTYAIMALLVHHGVQGLFQKHAQRKPHWHRGERLGAKDHLIKWAKPPRKPVWMSAQDYLKLPPTLTIRELAVNGIVYV
TTLSNPKRYPRRALAEHYRSRWTIELDLRSIKTDMAMERLRCKSPERVRKEIAAHLLAYNLVRANLNRAAQCFEKIPRQLSFKSALQLLNNAASQLLLLS
GKALQAFATALLQAMALSPIGRQKRLPQPRAVKRRPKPYPLLTRPRHAACQAIRRPTNSLR
ARQRLPRAPLENAVRESGQTLHQRAPSAWGWRGHRVVLADGTTALMPDTLDNQREFPQQGNQQPGLGFPIVRIVALISLGAGAVLDYALGPYQGKGSGES
SLFSTLLHTLQPGDLLLADRYYCTYAIMALLVHHGVQGLFQKHAQRKPHWHRGERLGAKDHLIKWAKPPRKPVWMSAQDYLKLPPTLTIRELAVNGIVYV
TTLSNPKRYPRRALAEHYRSRWTIELDLRSIKTDMAMERLRCKSPERVRKEIAAHLLAYNLVRANLNRAAQCFEKIPRQLSFKSALQLLNNAASQLLLLS
GKALQAFATALLQAMALSPIGRQKRLPQPRAVKRRPKPYPLLTRPRHAACQAIRRPTNSLR
Blast result :
Comments
ISMfl1 is 64% aa similar to ISArch10. ISMfl1 was found by screening completely sequenced genomes for sequences homologous to the ISRso13 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-78-D(N3)-105-E(C1). The sequencing of the Nitrococcus mobilis Nb-231 chromosome is currently in progress. Accession: NZ_AAOF00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Unpublished
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Unpublished