ISDre1
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Desulfotomaculum reducens | Desulfotomaculum reducens MI-1 |
DNA section
IS Length : 1554 bp
Ends
IR Length : 18/19
IRL : CACTAGTGTTGCATAAAAAAATTTTTGTTTTGTCAAGTATTTTGGGATAT
IRR : CACTAGCGTTGCATAAAAACTAATGTATAAATCAAAAGTAAATAAATGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATATATAT | AATTTTAATA | 0 |
DNA sequence
CACTAGTGTTGCATAAAAAAATTTTTGTTTTGTCAAGTATTTTGGGATATTTTGTCTACGAATAAATAAAAAATCTCCTTATAATTGAGATATAACAGGT
AGTCCTGTCCATAATCCCAAAAATAAGGAGACCACGCATGGACAAGAATACCAATAAATCCACATATAATCAACTATTTCAAACAATTTATAACGAAAAA
TTTTTAAGCAATGTCAAAGAATCAGAAGTCGATGCTTACGCTAAAAAATTAACCGTTATCAAACTAATTCAAATGATTTCCTATGCACAGTTAGAGCAAC
TTAAAGGTCTCCGCCATATTAGTAACAGCTTAAATGATGATAATTTCAGCTCGGCAGTAGGTTTAGATTCAATTAGTGCTTCACAGTTATCCCGTAAATT
GAGAGATTTATCTCCTGAATTAACTCAGTCTCTGTTTTCTGATATAGTCCATCAGTTTGGTACTGAAATAGGTTTTAAATCAATAAGACAAGAATTAGGT
CGCATTTATCTGATAGACTCTTCAACAATAAGCCTTTGTCTATCCCGATACCGCTGGGCAGAGTTCAGAAAAACCAAAAGTGGAGTTAAATTACACCTCC
GTATCCAGCTGCTTGAGCAAGGGGTTCTACCAGACAAAGCCATAATTAAACCAGCTAAGTCTGCTGACAAAACACAAATGGATGCCTTGGTTGTAGAAAA
AGATGCCCTAAACGTCTTTGATCGTGGCTACTTGGATTACAAGAGGTTTGACAATTATTCTAATAATGGTACCAGATTCGTTAGCCGTTTAAAGAGTAAC
GCAATAGTTGAAACACTAGAAGAATTTCCAACAAACCAAGATAGCTTAATCAAGAAAGACCATAAAGTAATCCTAGGCAAAGACGGTACAACCAAAATGC
AGAACCCCTTGAGACTAATAGAAACAGAAGATACCGAGGGTAAGCCTGTAATTATCATTACCAACGACTTTGAGTTAAGTGCCGAGGAAATAAGCGACAT
ATACCGCTACCGCTGGCAGATAGAATTATTCTTTAAGTGGATCAAACAACATTTCTGTGTAAAACATTTCTATGGTTTAAGCCAGCAGGCTGTGGAAAAC
CAATTGATGATAGCACTGATTACCTACTGTTTAATGATGTTGCTTAAAAAGAAAACAGGTTACGAAGGCCCATTACTAAAAATTCAAATGTTGCTTCATA
CATGCCTTTATGTAGACTTCACCAAGTTTGTACGAAAGCTCCACCACAAGTCAGGCCAAAGTTCAAGAGGACGACGGTGTATAGACCATGAAAAAGTCTA
CAACATTACGTTAGTACAGGTACTACAAGGTGAGGCAGAACACCTGGATGATCTAACTTACGACCCGATAATAGCTTAGGAATTACATGATCTGAAAAAT
GTGGATAAAGGACTACCTCTTAAGTGGTTGTTCCTTTAGCACAAAGAGAAATAAGGTAATTGGTGTATACAACCAAATTATTACAAAATAATACAATGCA
ATTTTCCATTTATTTACTTTTGATTTATACATTAGTTTTTATGCAACGCTAGTG
AGTCCTGTCCATAATCCCAAAAATAAGGAGACCACGCATGGACAAGAATACCAATAAATCCACATATAATCAACTATTTCAAACAATTTATAACGAAAAA
TTTTTAAGCAATGTCAAAGAATCAGAAGTCGATGCTTACGCTAAAAAATTAACCGTTATCAAACTAATTCAAATGATTTCCTATGCACAGTTAGAGCAAC
TTAAAGGTCTCCGCCATATTAGTAACAGCTTAAATGATGATAATTTCAGCTCGGCAGTAGGTTTAGATTCAATTAGTGCTTCACAGTTATCCCGTAAATT
GAGAGATTTATCTCCTGAATTAACTCAGTCTCTGTTTTCTGATATAGTCCATCAGTTTGGTACTGAAATAGGTTTTAAATCAATAAGACAAGAATTAGGT
CGCATTTATCTGATAGACTCTTCAACAATAAGCCTTTGTCTATCCCGATACCGCTGGGCAGAGTTCAGAAAAACCAAAAGTGGAGTTAAATTACACCTCC
GTATCCAGCTGCTTGAGCAAGGGGTTCTACCAGACAAAGCCATAATTAAACCAGCTAAGTCTGCTGACAAAACACAAATGGATGCCTTGGTTGTAGAAAA
AGATGCCCTAAACGTCTTTGATCGTGGCTACTTGGATTACAAGAGGTTTGACAATTATTCTAATAATGGTACCAGATTCGTTAGCCGTTTAAAGAGTAAC
GCAATAGTTGAAACACTAGAAGAATTTCCAACAAACCAAGATAGCTTAATCAAGAAAGACCATAAAGTAATCCTAGGCAAAGACGGTACAACCAAAATGC
AGAACCCCTTGAGACTAATAGAAACAGAAGATACCGAGGGTAAGCCTGTAATTATCATTACCAACGACTTTGAGTTAAGTGCCGAGGAAATAAGCGACAT
ATACCGCTACCGCTGGCAGATAGAATTATTCTTTAAGTGGATCAAACAACATTTCTGTGTAAAACATTTCTATGGTTTAAGCCAGCAGGCTGTGGAAAAC
CAATTGATGATAGCACTGATTACCTACTGTTTAATGATGTTGCTTAAAAAGAAAACAGGTTACGAAGGCCCATTACTAAAAATTCAAATGTTGCTTCATA
CATGCCTTTATGTAGACTTCACCAAGTTTGTACGAAAGCTCCACCACAAGTCAGGCCAAAGTTCAAGAGGACGACGGTGTATAGACCATGAAAAAGTCTA
CAACATTACGTTAGTACAGGTACTACAAGGTGAGGCAGAACACCTGGATGATCTAACTTACGACCCGATAATAGCTTAGGAATTACATGATCTGAAAAAT
GTGGATAAAGGACTACCTCTTAAGTGGTTGTTCCTTTAGCACAAAGAGAAATAAGGTAATTGGTGTATACAACCAAATTATTACAAAATAATACAATGCA
ATTTTCCATTTATTTACTTTTGATTTATACATTAGTTTTTATGCAACGCTAGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 413 aa | 138 | 1376 | + | No |
Chemistry : DDE
ORF sequence :
MDKNTNKSTYNQLFQTIYNEKFLSNVKESEVDAYAKKLTVIKLIQMISYAQLEQLKGLRHISNSLNDDNFSSAVGLDSISASQLSRKLRDLSPELTQSLF
SDIVHQFGTEIGFKSIRQELGRIYLIDSSTISLCLSRYRWAEFRKTKSGVKLHLRIQLLEQGVLPDKAIIKPAKSADKTQMDALVVEKDALNVFDRGYLD
YKRFDNYSNNGTRFVSRLKSNAIVETLEEFPTNQDSLIKKDHKVILGKDGTTKMQNPLRLIETEDTEGKPVIIITNDFELSAEEISDIYRYRWQIELFFK
WIKQHFCVKHFYGLSQQAVENQLMIALITYCLMMLLKKKTGYEGPLLKIQMLLHTCLYVDFTKFVRKLHHKSGQSSRGRRCIDHEKVYNITLVQVLQGEA
EHLDDLTYDPIIA
SDIVHQFGTEIGFKSIRQELGRIYLIDSSTISLCLSRYRWAEFRKTKSGVKLHLRIQLLEQGVLPDKAIIKPAKSADKTQMDALVVEKDALNVFDRGYLD
YKRFDNYSNNGTRFVSRLKSNAIVETLEEFPTNQDSLIKKDHKVILGKDGTTKMQNPLRLIETEDTEGKPVIIITNDFELSAEEISDIYRYRWQIELFFK
WIKQHFCVKHFYGLSQQAVENQLMIALITYCLMMLLKKKTGYEGPLLKIQMLLHTCLYVDFTKFVRKLHHKSGQSSRGRRCIDHEKVYNITLVQVLQGEA
EHLDDLTYDPIIA
Blast result :
Comments
ISDre1 is 70% aa similar to ISDha2. ISDre1 was found by screening completely sequenced genomes for sequences homologous to the ISAva1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-67-D(N3)-101-E(C1). The sequencing of the Desulfotomaculum reducens MI-1 chromosome is currently in progress. Accession number: NZ_AAOP00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.(2006)Unpublished.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P.(2006)Unpublished.