ISDha4
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 |
DNA section
IS Length : 1593 bp
Ends
IR Length : 16/17
IRL : CAGTAGCGTTGCATAAAAGCATCCGCAAAAAAGTCAAATTCTATATTTCC
IRR : CAGTAGCGTTGCATTAAGTTAATAAGTTTATTGTCAACCCAAAAGTTCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATCATATAG | GTGAAAGATA | 0 |
DNA sequence
CAGTAGCGTTGCATAAAAGCATCCGCAAAAAAGTCAAATTCTATATTTCCTAAAAAACAGCGAAATAACCTCAAAATCACCCCATGCTCCTGATTATTCC
TGTAAGATCAATAAAAAAATCCTTATAATAAGAGATAGGGTAGTCCTTGCCCAAATCTCAAATATAAGGAGATCAAAATGCAGGACAAGGATACTACACA
ATCCACATTTACGCAAGTGTTTCAGCCGTTTTTTTCTAAGGATCTTTGGAGAAAAATTGATCAAGAAGTTCCCAACCTCGATCAAAGGAATTATAAACTT
AAAACAAATCAGCTCACTCTCCTTATCAGCCACGCTCAACTTCAAGAATACAAGGCTTTACGAAAGATCAGTTCAAACGTTCAAAGCAACGATTTCAGTG
AGGCAATAGGCTTAGAAAGCATTAGTCATAGCCAGATTTCCCGTCGGTTAAGAACCTTACCCATCAAAGTTTCAGAAATGCTGTTTAAAGGTGTTTTAAA
CAAAGTTGCTCAAAAGAAAGGGGATGGCAAGATTCAACAGCGTCTTGGAAAGTTATACATGATTGATGCATCTGTTATCAGTCTATGCCTTTCCCGTTTT
CCTTGGGCCGTATTTCGGAAGACTAAGGCCGGTGTTAAAATGCACTTGCGCTTAAGCTTTGACGAAATGGCTATTCCAGACGAAGTCATTATTACTCCGG
CAAAGACAGCTGATCGAAAGAAGTTGGATGAGCTCATTGTTGTGGACAAGGATGCTTTAACTATTTTCGATCGGGGTTACATTGACTACTTGCTGTTTGA
TGAGTACTGCGAAAAAGAGATACGCTTTGTTACTCGCCTCAAAAACAATGCGGTCATCGAGTTTACAGGTGTTGAACGCCCTGTCGAAGAAGAAGGGAGT
ATTGAAGAAGACGTTGATATCATTTTAGGGACGGGTACTCGCAAAATGAAGCATACCCTTCGCGAAGTGACCATCGATGATAACGTCAATGAACCCTTTA
CCATCTTGACCAATGACTTTGACCTAAGTGCCGAGGAACTAGGAGAGGTCTACCGGTATCGCTGGCAAATTGAATTGTTTTTTAAATGGCTTAAGCAACA
TGCTCAGATTAAGCACTTTTACGGCACAAGCGAAGCCGCTGTGATTAATCAAATTCGCTTAGATCTGATGACCTATTGCACTTTAATATTGCTCAAACTT
GAAGTGGAGCACCAGAGAGACTTACTAACCTTGCAAAGAATGCTAATCGCCTGTCTCTATGAGAGCTATGATGAATTTTTAGGAAAACTCCGACGGCGAA
GAAGAAAAGGTTCAAAAAGGATTAAGCATGATACGATCTACCAAATGACAGACCATTACATCATGGCCGAGGAAGACACAGAATGGTTAAATGACTTAAT
CTATGATCCCGTAATTTTGTAAGATATATGTGTAGAAATGTGGAAAAGGACTATCTGTTAGTTCATTGCTTTTTTGGACTTTCAAAGAGAACTCTATATG
GTTGTATACACCAATTGAGGTAAATAGTTGAAGGTAATGCAGGGTGAACTTTTGGGTTGACAATAAACTTATTAACTTAATGCAACGCTACTG
TGTAAGATCAATAAAAAAATCCTTATAATAAGAGATAGGGTAGTCCTTGCCCAAATCTCAAATATAAGGAGATCAAAATGCAGGACAAGGATACTACACA
ATCCACATTTACGCAAGTGTTTCAGCCGTTTTTTTCTAAGGATCTTTGGAGAAAAATTGATCAAGAAGTTCCCAACCTCGATCAAAGGAATTATAAACTT
AAAACAAATCAGCTCACTCTCCTTATCAGCCACGCTCAACTTCAAGAATACAAGGCTTTACGAAAGATCAGTTCAAACGTTCAAAGCAACGATTTCAGTG
AGGCAATAGGCTTAGAAAGCATTAGTCATAGCCAGATTTCCCGTCGGTTAAGAACCTTACCCATCAAAGTTTCAGAAATGCTGTTTAAAGGTGTTTTAAA
CAAAGTTGCTCAAAAGAAAGGGGATGGCAAGATTCAACAGCGTCTTGGAAAGTTATACATGATTGATGCATCTGTTATCAGTCTATGCCTTTCCCGTTTT
CCTTGGGCCGTATTTCGGAAGACTAAGGCCGGTGTTAAAATGCACTTGCGCTTAAGCTTTGACGAAATGGCTATTCCAGACGAAGTCATTATTACTCCGG
CAAAGACAGCTGATCGAAAGAAGTTGGATGAGCTCATTGTTGTGGACAAGGATGCTTTAACTATTTTCGATCGGGGTTACATTGACTACTTGCTGTTTGA
TGAGTACTGCGAAAAAGAGATACGCTTTGTTACTCGCCTCAAAAACAATGCGGTCATCGAGTTTACAGGTGTTGAACGCCCTGTCGAAGAAGAAGGGAGT
ATTGAAGAAGACGTTGATATCATTTTAGGGACGGGTACTCGCAAAATGAAGCATACCCTTCGCGAAGTGACCATCGATGATAACGTCAATGAACCCTTTA
CCATCTTGACCAATGACTTTGACCTAAGTGCCGAGGAACTAGGAGAGGTCTACCGGTATCGCTGGCAAATTGAATTGTTTTTTAAATGGCTTAAGCAACA
TGCTCAGATTAAGCACTTTTACGGCACAAGCGAAGCCGCTGTGATTAATCAAATTCGCTTAGATCTGATGACCTATTGCACTTTAATATTGCTCAAACTT
GAAGTGGAGCACCAGAGAGACTTACTAACCTTGCAAAGAATGCTAATCGCCTGTCTCTATGAGAGCTATGATGAATTTTTAGGAAAACTCCGACGGCGAA
GAAGAAAAGGTTCAAAAAGGATTAAGCATGATACGATCTACCAAATGACAGACCATTACATCATGGCCGAGGAAGACACAGAATGGTTAAATGACTTAAT
CTATGATCCCGTAATTTTGTAAGATATATGTGTAGAAATGTGGAAAAGGACTATCTGTTAGTTCATTGCTTTTTTGGACTTTCAAAGAGAACTCTATATG
GTTGTATACACCAATTGAGGTAAATAGTTGAAGGTAATGCAGGGTGAACTTTTGGGTTGACAATAAACTTATTAACTTAATGCAACGCTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 414 aa | 178 | 1419 | + | No |
Chemistry : DDE
ORF sequence :
MQDKDTTQSTFTQVFQPFFSKDLWRKIDQEVPNLDQRNYKLKTNQLTLLISHAQLQEYKALRKISSNVQSNDFSEAIGLESISHSQISRRLRTLPIKVSE
MLFKGVLNKVAQKKGDGKIQQRLGKLYMIDASVISLCLSRFPWAVFRKTKAGVKMHLRLSFDEMAIPDEVIITPAKTADRKKLDELIVVDKDALTIFDRG
YIDYLLFDEYCEKEIRFVTRLKNNAVIEFTGVERPVEEEGSIEEDVDIILGTGTRKMKHTLREVTIDDNVNEPFTILTNDFDLSAEELGEVYRYRWQIEL
FFKWLKQHAQIKHFYGTSEAAVINQIRLDLMTYCTLILLKLEVEHQRDLLTLQRMLIACLYESYDEFLGKLRRRRRKGSKRIKHDTIYQMTDHYIMAEED
TEWLNDLIYDPVIL
MLFKGVLNKVAQKKGDGKIQQRLGKLYMIDASVISLCLSRFPWAVFRKTKAGVKMHLRLSFDEMAIPDEVIITPAKTADRKKLDELIVVDKDALTIFDRG
YIDYLLFDEYCEKEIRFVTRLKNNAVIEFTGVERPVEEEGSIEEDVDIILGTGTRKMKHTLREVTIDDNVNEPFTILTNDFDLSAEELGEVYRYRWQIEL
FFKWLKQHAQIKHFYGTSEAAVINQIRLDLMTYCTLILLKLEVEHQRDLLTLQRMLIACLYESYDEFLGKLRRRRRKGSKRIKHDTIYQMTDHYIMAEED
TEWLNDLIYDPVIL
Blast result :
Comments
ISDha4 is 57% aa similar to IS4Bsu1.
ISDha4 was found by screening completely sequenced genomes for sequences homologous to the ISPpu8 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-67-D(N3)-100-E(C1).
ISDha4 was found by screening completely sequenced genomes for sequences homologous to the ISPpu8 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-67-D(N3)-100-E(C1).
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P. and Richardson,P.(2006)Unpublished
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P. and Richardson,P.(2006)Unpublished