IS1310
- Family IS256
- Group
Isoform Synonym(s) ISLrh1
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AF406971 | ND | Enterococcus hirae | Pediococcus claussenii ATCC BAA-344 plasmid pPECL-4 Enterococcus hirae Lactobacillus rhamnosus Lc 1/3 |
DNA section
IS Length : 1352 bp
Ends
IR Length : 20/25
IRL : GAGAGCGTAAAATATCTTGTGTAAACGCACAAAAGATTTCTAAATTGTAT
IRR : GGTAGCGTCAAGAATCTTGTGTAAATGAAATGCCTTCGTACATATAATAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTACTGATAT | AATTTTTTTT | 0 |
DNA sequence
GAGAGCGTAAAATATCTTGTGTAAACGCACAAAAGATTTCTAAATTGTATAGAAATAGGGAATGCCTTCCCTTATGATATTTAGTAACCACAGAAAACAT
CACAGGAGGCATTCCCCATGAATGAACTTACCACAGAAATTATCGCTGCACTAGCCCAAAAACAAGATTTGGACGAAGTTTTTCGTCACCACCTTGAAAT
CGCCATCAACCAGCTGCTTCAAACTGAATTGGCAGAGTTTTTGGGTTACGAACGCTACTCATACGCTGGGATTAACACTGGTAATAACCGCAACGGCAGT
TATGAGCGCTCGTTTGATACGAAGTACGGCCAACTTAACTTAACCATTCCTCGAGATCGCAATGGCCGGTTTGAAAATCATACCTTGCCAGCCTACGGTC
GGCACAGTGATAATTTAGAAACAACGGTTATTCAGTTGTATACCAAGGGAATTACCACTGCTGAAATTGCCGAACTCATTGAGAATATGTACGGTGCTCA
CTACTCCAAAGCCACGGTTTCCAACATGACTAAAGCCGTCAATGAACAGGTTCAAGCTTTCCAGCAACGTCGACTGGCTTCACAATATGCGGCTATCTTC
TTAGATGCCACTTACTTGCCGTTAAAGCGGGATACCGTTCAAAAAGAAGCGGTTCATATTGCGATTGGCATTCGTCCAGATGGTACGAAAGAAGTGCTGA
ACTACCAAGTGGCGCCGACGGAATCAACTGGGATCTGGACTGAATTACTGGGAACCCTGATTAAGCAAGGTGTCAAAGATGTGCTGTTGTTTGTGGCCGA
TGGGTTAGTTGGTTTGGATGAAGGTTTAAATCGGCATTTTCCCAAAGCTAAACGACAACGTTGCCTGGTTCATGTTGGGCGTAATTTGATAAACAAAGTT
CGGGTGAAAGACCGTAAGGCCGTGATCAATGACTTTAAACAAGTTCATTGGGCTGCCAATCGTGAAGCAGCCGAACTGAAACTGAATGAGTTCGCCAACA
ACTGGCATCGTACCTATCCCAAGTTAATCAAAGATCTGCTTAAAATGCCGAATCTGCTCACTTTCATGGACTTTCCACCAGCCATTCGGCAATCACTCTA
CTCCACTAACTTGATTGAGAACTTTAACAAGCATCTCAAGCGCACCACCCACCGCAAAGAACAATTTCCAACGGAAGATTCACTGGATCGATTCCTGGTT
TCTCAGTTTAATGCTTATAACGAGAAGTCTCTGAAGCGGATCCACCGAGGCTTTAAAGGACTCCAGGACACCTTGGAAGCATCATTTATTTGAGTTAGTT
ACATATTATATGTACGAAGGCATTTCATTTACACAAGATTCTTGACGCTACC
CACAGGAGGCATTCCCCATGAATGAACTTACCACAGAAATTATCGCTGCACTAGCCCAAAAACAAGATTTGGACGAAGTTTTTCGTCACCACCTTGAAAT
CGCCATCAACCAGCTGCTTCAAACTGAATTGGCAGAGTTTTTGGGTTACGAACGCTACTCATACGCTGGGATTAACACTGGTAATAACCGCAACGGCAGT
TATGAGCGCTCGTTTGATACGAAGTACGGCCAACTTAACTTAACCATTCCTCGAGATCGCAATGGCCGGTTTGAAAATCATACCTTGCCAGCCTACGGTC
GGCACAGTGATAATTTAGAAACAACGGTTATTCAGTTGTATACCAAGGGAATTACCACTGCTGAAATTGCCGAACTCATTGAGAATATGTACGGTGCTCA
CTACTCCAAAGCCACGGTTTCCAACATGACTAAAGCCGTCAATGAACAGGTTCAAGCTTTCCAGCAACGTCGACTGGCTTCACAATATGCGGCTATCTTC
TTAGATGCCACTTACTTGCCGTTAAAGCGGGATACCGTTCAAAAAGAAGCGGTTCATATTGCGATTGGCATTCGTCCAGATGGTACGAAAGAAGTGCTGA
ACTACCAAGTGGCGCCGACGGAATCAACTGGGATCTGGACTGAATTACTGGGAACCCTGATTAAGCAAGGTGTCAAAGATGTGCTGTTGTTTGTGGCCGA
TGGGTTAGTTGGTTTGGATGAAGGTTTAAATCGGCATTTTCCCAAAGCTAAACGACAACGTTGCCTGGTTCATGTTGGGCGTAATTTGATAAACAAAGTT
CGGGTGAAAGACCGTAAGGCCGTGATCAATGACTTTAAACAAGTTCATTGGGCTGCCAATCGTGAAGCAGCCGAACTGAAACTGAATGAGTTCGCCAACA
ACTGGCATCGTACCTATCCCAAGTTAATCAAAGATCTGCTTAAAATGCCGAATCTGCTCACTTTCATGGACTTTCCACCAGCCATTCGGCAATCACTCTA
CTCCACTAACTTGATTGAGAACTTTAACAAGCATCTCAAGCGCACCACCCACCGCAAAGAACAATTTCCAACGGAAGATTCACTGGATCGATTCCTGGTT
TCTCAGTTTAATGCTTATAACGAGAAGTCTCTGAAGCGGATCCACCGAGGCTTTAAAGGACTCCAGGACACCTTGGAAGCATCATTTATTTGAGTTAGTT
ACATATTATATGTACGAAGGCATTTCATTTACACAAGATTCTTGACGCTACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1176 bp | 391 aa | 118 | 1293 | + | No |
Chemistry : DDE
ORF sequence :
MNELTTEIIAALAQKQDLDEVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNGSYERSFDTKYGQLNLTIPRDRNGRFENHTLPAYGRHSDNL
ETTVIQLYTKGITTAEIAELIENMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAP
TESTGIWTELLGTLIKQGVKDVLLFVADGLVGLDEGLNRHFPKAKRQRCLVHVGRNLINKVRVKDRKAVINDFKQVHWAANREAAELKLNEFANNWHRTY
PKLIKDLLKMPNLLTFMDFPPAIRQSLYSTNLIENFNKHLKRTTHRKEQFPTEDSLDRFLVSQFNAYNEKSLKRIHRGFKGLQDTLEASFI
ETTVIQLYTKGITTAEIAELIENMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAP
TESTGIWTELLGTLIKQGVKDVLLFVADGLVGLDEGLNRHFPKAKRQRCLVHVGRNLINKVRVKDRKAVINDFKQVHWAANREAAELKLNEFANNWHRTY
PKLIKDLLKMPNLLTFMDFPPAIRQSLYSTNLIENFNKHLKRTTHRKEQFPTEDSLDRFLVSQFNAYNEKSLKRIHRGFKGLQDTLEASFI
Blast result :
Comments
IS1310 is 75% aa similar to ISEf1.
File updated : March 27 2013 :
1/ Modifications of the ends of the IS.
2/ The file of ISLrh1 was deleted (partial sequence and isoform of this sequence). Accession number : AF063000.
File updated : March 27 2013 :
1/ Modifications of the ends of the IS.
2/ The file of ISLrh1 was deleted (partial sequence and isoform of this sequence). Accession number : AF063000.
References
1] Werner, G. (2001) Direct submission GenBank.
2] Tilsala-Timisjarvi,A. and Alatossava,T.(1998) Appl. Environ. Microbiol. 64 (12), 4816-4819
3] Tilsala-Timisjarvi,A. and Alatossava,T. (1998) Direct Submission
4] Pittet,V., Abegunde,T., Marfleet,T., Haakensen,M., Morrow,K., Jayaprakash,T., Schroeder,K., Trost,B., Byrns,S., Bergsveinson,J., Kusalik,A. and Ziola,B. (2012) J. Bacteriol. 194 (5), 1271-1272.
2] Tilsala-Timisjarvi,A. and Alatossava,T.(1998) Appl. Environ. Microbiol. 64 (12), 4816-4819
3] Tilsala-Timisjarvi,A. and Alatossava,T. (1998) Direct Submission
4] Pittet,V., Abegunde,T., Marfleet,T., Haakensen,M., Morrow,K., Jayaprakash,T., Schroeder,K., Trost,B., Byrns,S., Bergsveinson,J., Kusalik,A. and Ziola,B. (2012) J. Bacteriol. 194 (5), 1271-1272.