ISNpu8
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Nostoc punctiforme | Nostoc punctiforme PCC 73102 |
DNA section
IS Length : 1412 bp
Ends
IR Length : 18
IRL : CATTGGTGTCAACTTAAGCAAAAAGTAAGCAAAAGATGTAATCTAAGAAC
IRR : CATTGGTGTCAACTTAAGAAGATTTTGCCCAAATTTGTTGGGTGTAAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTAGGGGCG | CACATCTGT | GTGCCCCTAC | 9 |
DNA sequence
CATTGGTGTCAACTTAAGCAAAAAGTAAGCAAAAGATGTAATCTAAGAACATTACTAATGATGTTCTTAGAGATACATCATGGCAAGAAAACGCCCAGCG
CGAACAGGAAACCCAGACCTGCGGCAACAAAAACAAGTACCGATGCCGCCAATAGAGGAAATTGAACAAAAAATCTACTCATTACTATCTCCGCTCAACT
TTAAACCCTTGAAATTGTACGAAACGGAAGAAAAGAAACCATTCCGAGACAGAATACTGACCTTATCGGTAATGATGGCGCTCGTTGTGAGTTTAGTATA
TCGTCAGATTCCTGGATTAAGAGAAGTACAAAGAGTCCTATGCGAAGAAGGATTATTGTGGGCAGGTCGGATTGAAGTGAGTGCCCAAGCAGTTTCAAAA
CGATTGAGAACACTACCAATAGAATTATTTGCACAAATTTTCGAGCAAGTAATGGAAAGAATGAATGTGCAGCCACAAAATCAGGCAGTACCAGAGAATT
GGCAGCCAGTATGCGCCAAATTTACAGCCATCTGGATTGCTGACGGTTCAACCCTAGAAGCACTAAGACGCAAACTCAAAGTACTACAAGAACAAGAAAA
AACACTTGCTGGCAAAATTATGATGGTGGTAGAAGCATTTAGCCATCACCCAGTCACAACCTGGTATACGCAAAACAGCAAAGCCAATGATAAAACTTGG
TGCGAACAATTACTTGAACGCCTACCAATTGGTGGATTGCTGATTTTTGATTTAGGATTTTTTAAGTTTCCTTGGTTTGATGCGTTCACAGAAGCTGATA
AGTTTTTTTTGACAAGACTGCGAGAAAAAACTTCTTACAAGGTGATACGTTGTTTGACCAATGCCTCATTCTACCGTAATGAAATTATATCTATGGGGGA
ATATCGCTCTAATCCTTGCCAGCACCAAGTACGTTTAGTTTCTGTTTTGTGGGGTTCAACTTGGTACTATTACCTGACAAATGTACTCGACCCACAAATG
TTATCTGCTCATCTTGTCTGTGAATTAGGGAGCAGGCGCTGGCGCGTTGAAGATGCTTTTCTGCTCACAAAAAGACTTTTAGGTTTAGCTTATATTTGGG
TTGGGGACAACAATGGCGTACAAATCCAGATTTTTGCCACTTGGATTTTTTATGCTGTTCTTAACCAATTATGTATCGATATAGCGATCGCCCTCAACCA
ACCTTTAGACCGAATTTCTACAGAAATGGTATTTCGTGCTTTATACCATTTTTCACAAGCTGTTCTCCGTGGTGATGCACATGAGGCTGTTCCTTATCTT
GTGGAACGTCAAAAGCTGTTTGGATTAGTTAAAGCAAGGCGTAAGCGTCATCGAGAGATTGACGCTTACACCCAACAAATTTGGGCAAAATCTTCTTAAG
TTGACACCAATG
CGAACAGGAAACCCAGACCTGCGGCAACAAAAACAAGTACCGATGCCGCCAATAGAGGAAATTGAACAAAAAATCTACTCATTACTATCTCCGCTCAACT
TTAAACCCTTGAAATTGTACGAAACGGAAGAAAAGAAACCATTCCGAGACAGAATACTGACCTTATCGGTAATGATGGCGCTCGTTGTGAGTTTAGTATA
TCGTCAGATTCCTGGATTAAGAGAAGTACAAAGAGTCCTATGCGAAGAAGGATTATTGTGGGCAGGTCGGATTGAAGTGAGTGCCCAAGCAGTTTCAAAA
CGATTGAGAACACTACCAATAGAATTATTTGCACAAATTTTCGAGCAAGTAATGGAAAGAATGAATGTGCAGCCACAAAATCAGGCAGTACCAGAGAATT
GGCAGCCAGTATGCGCCAAATTTACAGCCATCTGGATTGCTGACGGTTCAACCCTAGAAGCACTAAGACGCAAACTCAAAGTACTACAAGAACAAGAAAA
AACACTTGCTGGCAAAATTATGATGGTGGTAGAAGCATTTAGCCATCACCCAGTCACAACCTGGTATACGCAAAACAGCAAAGCCAATGATAAAACTTGG
TGCGAACAATTACTTGAACGCCTACCAATTGGTGGATTGCTGATTTTTGATTTAGGATTTTTTAAGTTTCCTTGGTTTGATGCGTTCACAGAAGCTGATA
AGTTTTTTTTGACAAGACTGCGAGAAAAAACTTCTTACAAGGTGATACGTTGTTTGACCAATGCCTCATTCTACCGTAATGAAATTATATCTATGGGGGA
ATATCGCTCTAATCCTTGCCAGCACCAAGTACGTTTAGTTTCTGTTTTGTGGGGTTCAACTTGGTACTATTACCTGACAAATGTACTCGACCCACAAATG
TTATCTGCTCATCTTGTCTGTGAATTAGGGAGCAGGCGCTGGCGCGTTGAAGATGCTTTTCTGCTCACAAAAAGACTTTTAGGTTTAGCTTATATTTGGG
TTGGGGACAACAATGGCGTACAAATCCAGATTTTTGCCACTTGGATTTTTTATGCTGTTCTTAACCAATTATGTATCGATATAGCGATCGCCCTCAACCA
ACCTTTAGACCGAATTTCTACAGAAATGGTATTTCGTGCTTTATACCATTTTTCACAAGCTGTTCTCCGTGGTGATGCACATGAGGCTGTTCCTTATCTT
GTGGAACGTCAAAAGCTGTTTGGATTAGTTAAAGCAAGGCGTAAGCGTCATCGAGAGATTGACGCTTACACCCAACAAATTTGGGCAAAATCTTCTTAAG
TTGACACCAATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1317 bp | 439 aa | 80 | 1396 | + | No |
Chemistry : DDE
ORF sequence :
MARKRPARTGNPDLRQQKQVPMPPIEEIEQKIYSLLSPLNFKPLKLYETEEKKPFRDRILTLSVMMALVVSLVYRQIPGLREVQRVLCEEGLLWAGRIEV
SAQAVSKRLRTLPIELFAQIFEQVMERMNVQPQNQAVPENWQPVCAKFTAIWIADGSTLEALRRKLKVLQEQEKTLAGKIMMVVEAFSHHPVTTWYTQNS
KANDKTWCEQLLERLPIGGLLIFDLGFFKFPWFDAFTEADKFFLTRLREKTSYKVIRCLTNASFYRNEIISMGEYRSNPCQHQVRLVSVLWGSTWYYYLT
NVLDPQMLSAHLVCELGSRRWRVEDAFLLTKRLLGLAYIWVGDNNGVQIQIFATWIFYAVLNQLCIDIAIALNQPLDRISTEMVFRALYHFSQAVLRGDA
HEAVPYLVERQKLFGLVKARRKRHREIDAYTQQIWAKSS
SAQAVSKRLRTLPIELFAQIFEQVMERMNVQPQNQAVPENWQPVCAKFTAIWIADGSTLEALRRKLKVLQEQEKTLAGKIMMVVEAFSHHPVTTWYTQNS
KANDKTWCEQLLERLPIGGLLIFDLGFFKFPWFDAFTEADKFFLTRLREKTSYKVIRCLTNASFYRNEIISMGEYRSNPCQHQVRLVSVLWGSTWYYYLT
NVLDPQMLSAHLVCELGSRRWRVEDAFLLTKRLLGLAYIWVGDNNGVQIQIFATWIFYAVLNQLCIDIAIALNQPLDRISTEMVFRALYHFSQAVLRGDA
HEAVPYLVERQKLFGLVKARRKRHREIDAYTQQIWAKSS
Blast result :
Comments
ISNpu8 is 57% aa similar to ISAva1. ISNpu8 was found by screening completely sequenced genomes for sequences homologous to the ISAva1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-68-D(N3)-99-E(C1). The sequencing of the Nostoc punctiforme PCC 73102 chromosome is currently in progress. Accession: NZ_AAAY00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] NCBI Microbial Genomes Annotation Project (2004) Unpublished
2] NCBI Microbial Genomes Annotation Project (2004) Unpublished