ISWen1
- Family IS4
- Group IS231
Isoform Synonym(s) ISWpi6
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002978 | ND | Wolbachia endosymbiont | Wolbachia endosymbiont of Drosophila melanogaster |
DNA section
IS Length : 1432 bp
Ends
IR Length : 18
IRL : CATACGCGTCAAGTTAAGGAAATAAAGGTATGAAAGAGATAGAATAATAA
IRR : CATACGCGTCAAGTTAAGAGATTGTAAGTAAATTCAGGGAAGTTAAGGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACTTTTTTG | CTTCTTTGAA | 0 | |
CTTTTTTGAAC | CTTCTTTGAAC | 0 | |
GTTTGACACA | CTTTTTTGAAC | ATTCCCAACG | 11 |
DNA sequence
CATACGCGTCAAGTTAAGGAAATAAAGGTATGAAAGAGATAGAATAATAAGGTATAAGTTCTCCCAGAAATACTTTTAGTGAGAGAACCAATGAATAAAA
TAACTAGCTTATCAAAAAAGCTCAAAGAATTTTTTAATGAAAAAGCAGACAAAATCTCAATTACAACAAGGTTTATAAAAAGAAAGAGAAAGCTAAAAGG
TTCATCGTTCGTAAAAGCCATGGTCTTGGGTAATATAGGGGTTGATAATTGTAGCGTAGAAACAATGTGTCAATTACTAAACGAGGACTCGATAGATATA
ACAAAACAAGGTTTGGATTTTAGATTTACTGAAGAAGCAGTGGAATTTATGAAAAGGATGTATAATGAATCTGTGCTTCTCTTCAAAAATATCTTGCAAG
TTGATTGCAAAATCTTACAGCAATTTAATAGTGTTAAATTATTGGACAGTAGCTATATTACTCTACCTAACAGTATGGAAGAGATGTATAAAGGTTATGG
TACTAGCTACAGTGGCTATGAAAGCAATACTAAGTCTGGAATAAAGTTACAATTAGTTTTCGACTACATGAATCAGATAATAGACCAACTTAATTTAACG
GAGGGAGTAAGATCAGACCAGGGATATAGGAAACATTTAAGTAATATATTAAGCAATGATTTGCTAATATCTGATCTCGGTTATTTTGTGCCAAGTTCTT
TTAAACAAATCAATGAAATAGGAGCTTATTTCATAAGTCGTTATAAATCCGATACCAACATATATGATGTAGAAACAAATCAAAAAATGGAGTTATTAGA
ATGTTTAGAGGATAAGTTATTTTTAGAAAACGAGGTATTGTTAGGAAAAGAAGCAAAAATTAGAGTAAGAATTATATGTCAGAAACTAACTGAAGAACAG
TCTATGGCCAGAAGAAGGAAAGCTAATAGATTAGCAAGATCGCAGGGATATACATCCTCTAAAAGAAATCAAAAATTGTTGAACTGGTCAATATTTATAA
CTAATGTTCCAGAAAATAAAATTAGTGCTGAGCAAGTATTAACGATTTACAGAGTAAGGTGGCAAATTGAGTTATTATTTAAATTGTATAAAAGCCATAT
CAGACTTGATAAGCTAAAAGGAAAGCCATGCAGAGTATTATGTGAACTATATGCTAAATTGTGCGCAATTCTTATATTTCACGGCATAGTTGGTTGCACA
GAAGTGAAAAAGAATACAGAACTTAGCTTAACAAAGGCATTTATTGAGCTAAAAAGGCGGGTTATAGAGTTATTTTTAGCACTAAAGAATAAAGTTAATA
GTTTGAAAGTTTTTCTTAAAAAGCTTACCATAACTTGGTCTCGATTTTCATTAAAAGACAAGTACAGAAAAACTAGAGTATCTACCTTAACTTCCCTGAA
TTTACTTACAATCTCTTAACTTGACGCGTATG
TAACTAGCTTATCAAAAAAGCTCAAAGAATTTTTTAATGAAAAAGCAGACAAAATCTCAATTACAACAAGGTTTATAAAAAGAAAGAGAAAGCTAAAAGG
TTCATCGTTCGTAAAAGCCATGGTCTTGGGTAATATAGGGGTTGATAATTGTAGCGTAGAAACAATGTGTCAATTACTAAACGAGGACTCGATAGATATA
ACAAAACAAGGTTTGGATTTTAGATTTACTGAAGAAGCAGTGGAATTTATGAAAAGGATGTATAATGAATCTGTGCTTCTCTTCAAAAATATCTTGCAAG
TTGATTGCAAAATCTTACAGCAATTTAATAGTGTTAAATTATTGGACAGTAGCTATATTACTCTACCTAACAGTATGGAAGAGATGTATAAAGGTTATGG
TACTAGCTACAGTGGCTATGAAAGCAATACTAAGTCTGGAATAAAGTTACAATTAGTTTTCGACTACATGAATCAGATAATAGACCAACTTAATTTAACG
GAGGGAGTAAGATCAGACCAGGGATATAGGAAACATTTAAGTAATATATTAAGCAATGATTTGCTAATATCTGATCTCGGTTATTTTGTGCCAAGTTCTT
TTAAACAAATCAATGAAATAGGAGCTTATTTCATAAGTCGTTATAAATCCGATACCAACATATATGATGTAGAAACAAATCAAAAAATGGAGTTATTAGA
ATGTTTAGAGGATAAGTTATTTTTAGAAAACGAGGTATTGTTAGGAAAAGAAGCAAAAATTAGAGTAAGAATTATATGTCAGAAACTAACTGAAGAACAG
TCTATGGCCAGAAGAAGGAAAGCTAATAGATTAGCAAGATCGCAGGGATATACATCCTCTAAAAGAAATCAAAAATTGTTGAACTGGTCAATATTTATAA
CTAATGTTCCAGAAAATAAAATTAGTGCTGAGCAAGTATTAACGATTTACAGAGTAAGGTGGCAAATTGAGTTATTATTTAAATTGTATAAAAGCCATAT
CAGACTTGATAAGCTAAAAGGAAAGCCATGCAGAGTATTATGTGAACTATATGCTAAATTGTGCGCAATTCTTATATTTCACGGCATAGTTGGTTGCACA
GAAGTGAAAAAGAATACAGAACTTAGCTTAACAAAGGCATTTATTGAGCTAAAAAGGCGGGTTATAGAGTTATTTTTAGCACTAAAGAATAAAGTTAATA
GTTTGAAAGTTTTTCTTAAAAAGCTTACCATAACTTGGTCTCGATTTTCATTAAAAGACAAGTACAGAAAAACTAGAGTATCTACCTTAACTTCCCTGAA
TTTACTTACAATCTCTTAACTTGACGCGTATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 446 aa | 79 | 1416 | + | No |
Chemistry : DDE
ORF sequence :
MREPMNKITSLSKKLKEFFNEKADKISITTRFIKRKRKLKGSSFVKAMVLGNIGVDNCSVETMCQLLNEDSIDITKQGLDFRFTEEAVEFMKRMYNESVL
LFKNILQVDCKILQQFNSVKLLDSSYITLPNSMEEMYKGYGTSYSGYESNTKSGIKLQLVFDYMNQIIDQLNLTEGVRSDQGYRKHLSNILSNDLLISDL
GYFVPSSFKQINEIGAYFISRYKSDTNIYDVETNQKMELLECLEDKLFLENEVLLGKEAKIRVRIICQKLTEEQSMARRRKANRLARSQGYTSSKRNQKL
LNWSIFITNVPENKISAEQVLTIYRVRWQIELLFKLYKSHIRLDKLKGKPCRVLCELYAKLCAILIFHGIVGCTEVKKNTELSLTKAFIELKRRVIELFL
ALKNKVNSLKVFLKKLTITWSRFSLKDKYRKTRVSTLTSLNLLTIS
LFKNILQVDCKILQQFNSVKLLDSSYITLPNSMEEMYKGYGTSYSGYESNTKSGIKLQLVFDYMNQIIDQLNLTEGVRSDQGYRKHLSNILSNDLLISDL
GYFVPSSFKQINEIGAYFISRYKSDTNIYDVETNQKMELLECLEDKLFLENEVLLGKEAKIRVRIICQKLTEEQSMARRRKANRLARSQGYTSSKRNQKL
LNWSIFITNVPENKISAEQVLTIYRVRWQIELLFKLYKSHIRLDKLKGKPCRVLCELYAKLCAILIFHGIVGCTEVKKNTELSLTKAFIELKRRVIELFL
ALKNKVNSLKVFLKKLTITWSRFSLKDKYRKTRVSTLTSLNLLTIS
Blast result :
Comments
ISwen1 is 47% aa similar to IS231S.
ISWen1 has been found by screening completely sequenced bacterial genomes for sequences homologous to the ISPpu8 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-75-D(N3)-131-E(C1). The copy number in Wolbachia endosymbiont of Drosophila melanogaster is 3.
ISWen1 has been found by screening completely sequenced bacterial genomes for sequences homologous to the ISPpu8 transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-75-D(N3)-131-E(C1). The copy number in Wolbachia endosymbiont of Drosophila melanogaster is 3.
References
1] Wu,M., Sun,L.V., Vamathevan,J., Riegler,M., Deboy,R., Brownlie,J.C., McGraw,E.A., Martin,W., Esser,C., Ahmadinejad,N., Wiegand,C., Madupu,R., Beanan,M.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., Kolonay,J.F., Nelson,W.C., Mohamoud,Y., Lee,P., Berry,K., Young,M.B., Utterback,T., Weidman,J., Nierman,W.C., Paulsen,I.T., Nelson,K.E., Tettelin,H., O'Neill,S.L. and Eisen,J.A. (2004) PLoS Biol. 2 (3), E69