ISBce7
- Family IS4
- Group IS231
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003909 | ND | Bacillus cereus | Bacillus cereus ATCC 10987 |
DNA section
IS Length : 2039 bp
Ends
IR Length : 16/17
IRL : CATCGCTATCAAGCTAAAAAAATAGGTCACCCCCAAAACGAAAAAATATG
IRR : CATCTCTATCAAGCTAAGCCCGTGTAACGTCAATGATAAGCAAGATTGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTACCGCCCA | TGGTGCTACC | 0 |
DNA sequence
CATCGCTATCAAGCTAAAAAAATAGGTCACCCCCAAAACGAAAAAATATGTTAAATTCCCATAGATAACTATCTTATATTAATTACATAACCTAGTGTGT
GATATAATAATATAAAGATATTATATTTAAAGGGGGGATTCAAATTGGTTAAAAACTTACCTTTACTAATAGTGATTTTAATACTAGGTGTAAGTTCTGC
TACATTAAGTACGAACGGATACTTTTCTCCAACTATAGAATGGTCTTTAATGATTATAAGTATTATTTTAAACATTACTGCAGTGATAGGTTTATCACTA
CACGTCCTTGTATATCAACCTATGAAAAGATTTGAAAAAAATTTAAAAGAGACCTTCAAATAAAATAATTATATTTGAGGTAACACCACATTGCCATCGA
GCTAAAAAAATGTATCCATAAAAAGAAAAAATACGCTATTCTTTCTGTAGAATCATAGGAAAGGATGGCGTTTTTTATGTCTATTTCTGTATCCAATGAA
TTACAACTATTTGCTCAAGAGATTCAAAGTTTTTTATCTCCAAATACCTTACGGGATCTTGCTAGAGATGTTGGTTTTGTACAACGAACCAGTAAGTACC
AAGCAAAAGATTTAGTAGCTTTATGTGTATGGGTGAGCCAAAATGTAGCTATGACTTCTTTAACTCAGTTATCTAGCTGTTTAGAAGCATCAACAGAAGT
ACTCATCAGTCCTGAGGGACTGAATCAACGGTTTAATAAGGCGGCCGTCCAACTTTTACAACACCTACTAGCCGAACTACTAAGCAAAAAATTGGCCACA
TCTATGCCGATTTCTTCTCCATACACTTCTGTTTTCAAGCGTATTCGTATTTTAGATTCAACTGCATTTCAACTCCCGGATGTATTTTCATCGGTTTATC
CAGGTGCAGGAGGATGCAACCATACAGCTGGGATAAAAATTCAACTTGAGTATGATTTGTTAAGTGGACAGTTCCTACATATTCATACAGGTCCAGGTAA
ACAACATGATCGCACTTACGGCTCCCTTTGTACCCCAACTGTGACAGCGAATGATTTATGTATCCGGGATTTAGGTTATTTTCATTTAAAAGACCTTCAA
TATATACAAGATAAAGAGGCCTACTATATCTCTCGTATCAAGTCGAATACACGTATGTATCAAAAAAACCCTAACCCTGATTATTTTCAAGACGGAAGAA
TTAAGAAAGGTACAGAGTATATACAGATAGATATGGAGACGTTAATGAACTCCCTTCAACCAGGAAAAACATGTGAAATAGCTGATGCTTATGTAGGAAT
GATTGATAAAGTACCAGCTCGTGTAATTGTTCATCGATTAACAAAACAACAGCAACAAAAACGATTACAAGATCAAGCCGTAAGAGAAAAAAAGAAAGGA
ATGAAGTATTCTCCTCGTAGTAAACGACTCAGTGGTATCAATGTATATATGACAAACACCCCTACAGATATTGTCCCGATGGGACAGGTACATGACTGGT
ATTCTTTGCGTTGGCAAATCGAAATTTTATTTAAAACGTGGAAGTCATTCTTTCAAATTCATCATTGTAAAAAGATAAAACCAGAACGATTGGAGTGCCA
TTTATATGGTCAATTGATTGCCATTCTACTCTGTTCTTCTATCATGTTCCAAATGCGCCAATTGCTCCTCATGAAGAAAAAACGAGAGCTTAGTGAGTAT
AAAGCCATATATATGATTAAAGACTATTTTCTTCTTCTTCTATTCCAAACTATACAAAAAAACACCCAAGAGCTATCAAAGGTTTTACTTCGCCTGTTCA
ATCTCCTACAGCAAAACGGGCGGAAATCTCATCGATATGAGAAAAAAACGGTCTTTGATATATTAGGTGTCGTTTACAATTGTACCATGTCTGATAATCA
AGCCGCTTAATTCAAAAAAGTGAAACCCGTTAGGGTTTATTTCGTATGCAAATCTTTAAAGCATCTACGTATAGACTTTCGAAAAAAGAAACAATCTTGC
TTATCATTGACGTTACACGGGCTTAGCTTGATAGAGATG
GATATAATAATATAAAGATATTATATTTAAAGGGGGGATTCAAATTGGTTAAAAACTTACCTTTACTAATAGTGATTTTAATACTAGGTGTAAGTTCTGC
TACATTAAGTACGAACGGATACTTTTCTCCAACTATAGAATGGTCTTTAATGATTATAAGTATTATTTTAAACATTACTGCAGTGATAGGTTTATCACTA
CACGTCCTTGTATATCAACCTATGAAAAGATTTGAAAAAAATTTAAAAGAGACCTTCAAATAAAATAATTATATTTGAGGTAACACCACATTGCCATCGA
GCTAAAAAAATGTATCCATAAAAAGAAAAAATACGCTATTCTTTCTGTAGAATCATAGGAAAGGATGGCGTTTTTTATGTCTATTTCTGTATCCAATGAA
TTACAACTATTTGCTCAAGAGATTCAAAGTTTTTTATCTCCAAATACCTTACGGGATCTTGCTAGAGATGTTGGTTTTGTACAACGAACCAGTAAGTACC
AAGCAAAAGATTTAGTAGCTTTATGTGTATGGGTGAGCCAAAATGTAGCTATGACTTCTTTAACTCAGTTATCTAGCTGTTTAGAAGCATCAACAGAAGT
ACTCATCAGTCCTGAGGGACTGAATCAACGGTTTAATAAGGCGGCCGTCCAACTTTTACAACACCTACTAGCCGAACTACTAAGCAAAAAATTGGCCACA
TCTATGCCGATTTCTTCTCCATACACTTCTGTTTTCAAGCGTATTCGTATTTTAGATTCAACTGCATTTCAACTCCCGGATGTATTTTCATCGGTTTATC
CAGGTGCAGGAGGATGCAACCATACAGCTGGGATAAAAATTCAACTTGAGTATGATTTGTTAAGTGGACAGTTCCTACATATTCATACAGGTCCAGGTAA
ACAACATGATCGCACTTACGGCTCCCTTTGTACCCCAACTGTGACAGCGAATGATTTATGTATCCGGGATTTAGGTTATTTTCATTTAAAAGACCTTCAA
TATATACAAGATAAAGAGGCCTACTATATCTCTCGTATCAAGTCGAATACACGTATGTATCAAAAAAACCCTAACCCTGATTATTTTCAAGACGGAAGAA
TTAAGAAAGGTACAGAGTATATACAGATAGATATGGAGACGTTAATGAACTCCCTTCAACCAGGAAAAACATGTGAAATAGCTGATGCTTATGTAGGAAT
GATTGATAAAGTACCAGCTCGTGTAATTGTTCATCGATTAACAAAACAACAGCAACAAAAACGATTACAAGATCAAGCCGTAAGAGAAAAAAAGAAAGGA
ATGAAGTATTCTCCTCGTAGTAAACGACTCAGTGGTATCAATGTATATATGACAAACACCCCTACAGATATTGTCCCGATGGGACAGGTACATGACTGGT
ATTCTTTGCGTTGGCAAATCGAAATTTTATTTAAAACGTGGAAGTCATTCTTTCAAATTCATCATTGTAAAAAGATAAAACCAGAACGATTGGAGTGCCA
TTTATATGGTCAATTGATTGCCATTCTACTCTGTTCTTCTATCATGTTCCAAATGCGCCAATTGCTCCTCATGAAGAAAAAACGAGAGCTTAGTGAGTAT
AAAGCCATATATATGATTAAAGACTATTTTCTTCTTCTTCTATTCCAAACTATACAAAAAAACACCCAAGAGCTATCAAAGGTTTTACTTCGCCTGTTCA
ATCTCCTACAGCAAAACGGGCGGAAATCTCATCGATATGAGAAAAAAACGGTCTTTGATATATTAGGTGTCGTTTACAATTGTACCATGTCTGATAATCA
AGCCGCTTAATTCAAAAAAGTGAAACCCGTTAGGGTTTATTTCGTATGCAAATCTTTAAAGCATCTACGTATAGACTTTCGAAAAAAGAAACAATCTTGC
TTATCATTGACGTTACACGGGCTTAGCTTGATAGAGATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1431 bp | 477 aa | 477 | 1907 | + | No |
Chemistry : DDE
ORF sequence :
MSISVSNELQLFAQEIQSFLSPNTLRDLARDVGFVQRTSKYQAKDLVALCVWVSQNVAMTSLTQLSSCLEASTEVLISPEGLNQRFNKAAVQLLQHLLAE
LLSKKLATSMPISSPYTSVFKRIRILDSTAFQLPDVFSSVYPGAGGCNHTAGIKIQLEYDLLSGQFLHIHTGPGKQHDRTYGSLCTPTVTANDLCIRDLG
YFHLKDLQYIQDKEAYYISRIKSNTRMYQKNPNPDYFQDGRIKKGTEYIQIDMETLMNSLQPGKTCEIADAYVGMIDKVPARVIVHRLTKQQQQKRLQDQ
AVREKKKGMKYSPRSKRLSGINVYMTNTPTDIVPMGQVHDWYSLRWQIEILFKTWKSFFQIHHCKKIKPERLECHLYGQLIAILLCSSIMFQMRQLLLMK
KKRELSEYKAIYMIKDYFLLLLFQTIQKNTQELSKVLLRLFNLLQQNGRKSHRYEKKTVFDILGVVYNCTMSDNQAA
LLSKKLATSMPISSPYTSVFKRIRILDSTAFQLPDVFSSVYPGAGGCNHTAGIKIQLEYDLLSGQFLHIHTGPGKQHDRTYGSLCTPTVTANDLCIRDLG
YFHLKDLQYIQDKEAYYISRIKSNTRMYQKNPNPDYFQDGRIKKGTEYIQIDMETLMNSLQPGKTCEIADAYVGMIDKVPARVIVHRLTKQQQQKRLQDQ
AVREKKKGMKYSPRSKRLSGINVYMTNTPTDIVPMGQVHDWYSLRWQIEILFKTWKSFFQIHHCKKIKPERLECHLYGQLIAILLCSSIMFQMRQLLLMK
KKRELSEYKAIYMIKDYFLLLLFQTIQKNTQELSKVLLRLFNLLQQNGRKSHRYEKKTVFDILGVVYNCTMSDNQAA
Blast result :
Comments
ISbce7 is 95% aa similar to IS231Y.
ISBce7 was found by screening completely sequenced genomes for sequences homologous to the IS4 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-70-D(N3)-150-E(C1). The copy number in Bacillus cereus ATCC 10987 is 1.
ISBce7 was found by screening completely sequenced genomes for sequences homologous to the IS4 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-70-D(N3)-150-E(C1). The copy number in Bacillus cereus ATCC 10987 is 1.
References
1] Rasko,D.A., Ravel,J., Okstad,O.A., Helgason,E., Cer,R.Z., Jiang,L., Shores,K.A., Fouts,D.E., Tourasse,N.J., Angiuoli,S.V., Kolonay,J., Nelson,W.C., Kolsto,A.-B., Fraser,C.M. and Read,T.D.(2004) Nucleic Acids Res. 32(3), 977-988
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18