ISBce12

  • Family IS4
  • Group IS231
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bacillus cereus
Bacillus cereus subsp. cytotoxis NVH 391-98
DNA section
IS Length : 1573 bp

Ends


IR Length : 17

IRL : CATAGCCATCAAGTTAAGGTTACGTATGTATAATTTTCAACAAAAACAGC
IRR : CATAGCCATCAAGTTAACAAAAACACTCCAGATGCTTTCAGCATCTGGAA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAAAAGCACTCCTACAAGTACTTTTTTTA11

DNA sequence

CATAGCCATCAAGTTAAGGTTACGTATGTATAATTTTCAACAAAAACAGCCATCCTTTCATGGAGTATCCATGAAAGGATGGCTGTTTTTATGTCTTCAA
TGAATCTTACGGAAGAACTTCAATTATTAGAACCAGAACTAAAAGGTACATTTTCACTTTCCTTTTTAGAATCACTTGCACGAAAAACAGGAATGATTCA
ACGTGCAAGGAAATGTAAAGCACAGGATATCGTTTCTTTATGCGTTTTTCTAAGTAAAACAATTGGTACAGAATCATTAGCTAGTCTTTGTACCAAATTA
AATGAATCAACAGGCGTTTCCCTATCTTCTGAAGGACTGAATCAACGTTTTATCCCTCATACCGTTCAAATTTTTAAACGAATTTTTGCAAGGCTATTCC
ATCAGAATATTTGTCCAACTCCATTGATAGTAGGGAATTTTAAACAAATTCGAATCTTAGATTCTACCATGTTTCAACTTCCCAAGCACTACGCTCATAT
ATATAAAGGTTTTGGTGGTGGTGGATCAGAAGCTGGAGTCAAAATTCAACTGGAGTATGCTTTATTATCTGGAAACTTTCTTCAAATGGATGTGAATCAT
GCAGTTAGTAATGATAATGCATACGGACAAACTCGAACAGATGCATTAGAACCAGGAGATTTATGTGTCAGAGATTTGGGGTATTTTTATATTGATGATT
TTAAGAAAATGGAGGAAAAGCGAGCTTCTTATATTTCGCGTATCCGTTGGAATACACAAGTATATAGAAAAACAGAGGACATGTGGGAACTGATTGATAT
AGAAGCCACTTCAAAACAATTAAAAGAGGGAGAACATATCGAGTTGCCTTGCGTATATATTGGATTTCATCAAAAACAAGTAACACGTTTGATCATCTAT
AAATTAACAAAGTCTGAACATACGAAGCGATTAGAACGGCACAAAAAAGAAAAAAGACGAATGCCTACATACGCAAGTGGAATCAACTTATTTATTACAA
ATATAAAAGAAACAGATATGAAAGCACATGAGATTTATCAATTCTATTCCCTTAGGTGGCAAATTGAAATTTTGTTTAAAACATGGAAATCTATTTTAGG
TATTCATGCGGTTAAAAAGATAAAACTCGAACGATTCCAGTGCCATTCGTATGGACAGTTGATTGCGTTATGTCTTATCGCAAGTATAACTTATAAAATG
CGGAGACTCATATGGGAGAGGAAACATAAAGAAATCAGTGAATATAAGGCAACATATATTATATATTTATTTTCCAAGTATACTCGATGTGCTGTTCACA
TCCTGTCGAGACATAATTCCCATTCTTATCAGATTATTCGAAGACCTGTCGAAAAATGGTAGGAAGGCGCATCGGTATACCAAATATTCACCATTTGATA
TTCTTGGCATCACTCAAGAATATACAAATTCACTTCAACACATCGCTTAAAAAATAAATATGTTGAAGTCTTATTTGAGTATGTCCAAATATAGAAACTT
GTATTCTATATCTAACAAAAACATTCCAGATGCTGAAAGCATCTGGAGTGTTTTTGTTAACTTGATGGCTATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp423 aa911359+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSMNLTEELQLLEPELKGTFSLSFLESLARKTGMIQRARKCKAQDIVSLCVFLSKTIGTESLASLCTKLNESTGVSLSSEGLNQRFIPHTVQIFKRIFA
RLFHQNICPTPLIVGNFKQIRILDSTMFQLPKHYAHIYKGFGGGGSEAGVKIQLEYALLSGNFLQMDVNHAVSNDNAYGQTRTDALEPGDLCVRDLGYFY
IDDFKKMEEKRASYISRIRWNTQVYRKTEDMWELIDIEATSKQLKEGEHIELPCVYIGFHQKQVTRLIIYKLTKSEHTKRLERHKKEKRRMPTYASGINL
FITNIKETDMKAHEIYQFYSLRWQIEILFKTWKSILGIHAVKKIKLERFQCHSYGQLIALCLIASITYKMRRLIWERKHKEISEYKATYIIYLFSKYTRC
AVHILSRHNSHSYQIIRRPVEKW

 

Blast result :
Comments
ISBce12 is 60% aa similar to IS231B. ISBce12 was found by screening completely sequenced genomes for sequences homologous to the ISRm16 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-70-D(N3)-130-E(C1). The sequencing of the Bacillus cereus subsp. cytotoxis NVH 391-98 chromosome is currently in progress. Accession number : NZ_AALL00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Lapidus,A., Goltsman,E., Copeland,A., Lucas,S., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M., Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D., Lereclus,D., Aymerich,S.,Nguen-the, C. and Sorokin,A.(2006)Unpublished