ISRle2

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008383 ND Rhizobium leguminosarum
Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8
DNA section
IS Length : 1116 bp

Ends


IR Length : 15/19

IRL : GGTACATTCTATTTCCAAGTGCGACATGCCAGTAATTTCAATGGCTTCAC
IRR : GTGGAAAAGCTAACCCAAGTGCATCACGCCTGTTTTGCAGAGTAGGGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
ATAACATTACGAATTGATTCGT2

DNA sequence

GGTACATTCTATTTCCAAGTGCGACATGCCAGTAATTTCAATGGCTTCACTTTGGAGATTTTGGCATGTCTCGATGCTATATGCAGCTTGCCCTCGCCGA
CCGGCGACGCCTACATCAGCTGGTGGCGGCAAAAGTTCCCGTCAACGAGATGGCACGTCAGCTTGGCCGTCATCGCTCGACGATTTACCGCGAGATCAAG
CGCAATACGTTTCACGACCGTGAACTGCCGGACTACAACGGTTATTACAGCACGGTTGCGAACGACATTGCGCAGGACCGACGTCGCCGGCTGAGAAAGC
TGCGGCGCCACCCGACCTTGCGCACAGAGATCATCAACCAGTTGGAGGCTCGCTGGTCGCCGGAACAGATTGCCGGACGCCTGCTGTCGGACGGCCTCAG
TCGTATTCGCGTTTGCAAGGAGACAATCTATCGCTTCATCTACAGCAAGGAAGATTATGGGCTTGGTCTCTATCAGTATCTACCGGAGGCACGCCGCAAA
CGTCGTGCAATGCGCTCCAGGAAGCCGCGCGACGGTGCGTTTCCAGCCACGCACCGCATATCCCAACGGCCTGATTTTGTTGGAGATAGATCGCGGTTTG
GCCATTGGGAGGGTGACCTTCTCATCTTCGAACGCCCACTCGGCCATGCCAATATCACCACTCTCGTCGAGCGCAAGAGCCGCTATACCGTTCTCATCAA
GAATCCGAGCCGGCACTCGCGCCCAATCATGGACAAGATCATCAGAGCGTTTTCTCCTTTGCCGGCGTTCGCGCGTCAAAGCTTCACGTTGAATCGAGGG
ACCGAGTTTGCCGGGTTCAGGGCTTTGGAAGAAGGGATCGGTGCGTGCAGTTGGTTTTGCGACCCAAGTGCGCCTTGGCAAAAAGGGACAGTCGAGAACA
CCAACAAGCGCATTCGACGCTTCCTGCCAGGCACCACAGATCTGGCAGTTGTGTCGCAACGCGACCTTCTCCACCTCACGCGTCATGTCAACGATCAACC
GCGCAAATGCCTCGGATACAGGACGCCGACCGAGGTGTTTATGGCGCATTTGCACGAAGATAGGTGATCCCCTACTCTGCAAAACAGGCGTGATGCACTT
GGGTTAGCTTTTCCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1002 bp333 aa661067+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRCYMQLALADRRRLHQLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYNGYYSTVANDIAQDRRRRLRKLRRHPTLRTEIINQLEARWSPE
QIAGRLLSDGLSRIRVCKETIYRFIYSKEDYGLGLYQYLPEARRKRRAMRSRKPRDGAFPATHRISQRPDFVGDRSRFGHWEGDLLIFERPLGHANITTL
VERKSRYTVLIKNPSRHSRPIMDKIIRAFSPLPAFARQSFTLNRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGTTDLAVVSQRD
LLHLTRHVNDQPRKCLGYRTPTEVFMAHLHEDR

 

Blast result :
Comments
ISRle2 is 54% aa similar to ISLxx5.
References
1] Young,J.W., Crossman,L.C., Johnston,A.W.B., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R.J., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,A., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J.
(2006) Genome Biol. 7, R4-R4