ISRle2
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008383 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8 |
DNA section
IS Length : 1116 bp
Ends
IR Length : 15/19
IRL : GGTACATTCTATTTCCAAGTGCGACATGCCAGTAATTTCAATGGCTTCAC
IRR : GTGGAAAAGCTAACCCAAGTGCATCACGCCTGTTTTGCAGAGTAGGGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAACATTAC | GA | ATTGATTCGT | 2 |
DNA sequence
GGTACATTCTATTTCCAAGTGCGACATGCCAGTAATTTCAATGGCTTCACTTTGGAGATTTTGGCATGTCTCGATGCTATATGCAGCTTGCCCTCGCCGA
CCGGCGACGCCTACATCAGCTGGTGGCGGCAAAAGTTCCCGTCAACGAGATGGCACGTCAGCTTGGCCGTCATCGCTCGACGATTTACCGCGAGATCAAG
CGCAATACGTTTCACGACCGTGAACTGCCGGACTACAACGGTTATTACAGCACGGTTGCGAACGACATTGCGCAGGACCGACGTCGCCGGCTGAGAAAGC
TGCGGCGCCACCCGACCTTGCGCACAGAGATCATCAACCAGTTGGAGGCTCGCTGGTCGCCGGAACAGATTGCCGGACGCCTGCTGTCGGACGGCCTCAG
TCGTATTCGCGTTTGCAAGGAGACAATCTATCGCTTCATCTACAGCAAGGAAGATTATGGGCTTGGTCTCTATCAGTATCTACCGGAGGCACGCCGCAAA
CGTCGTGCAATGCGCTCCAGGAAGCCGCGCGACGGTGCGTTTCCAGCCACGCACCGCATATCCCAACGGCCTGATTTTGTTGGAGATAGATCGCGGTTTG
GCCATTGGGAGGGTGACCTTCTCATCTTCGAACGCCCACTCGGCCATGCCAATATCACCACTCTCGTCGAGCGCAAGAGCCGCTATACCGTTCTCATCAA
GAATCCGAGCCGGCACTCGCGCCCAATCATGGACAAGATCATCAGAGCGTTTTCTCCTTTGCCGGCGTTCGCGCGTCAAAGCTTCACGTTGAATCGAGGG
ACCGAGTTTGCCGGGTTCAGGGCTTTGGAAGAAGGGATCGGTGCGTGCAGTTGGTTTTGCGACCCAAGTGCGCCTTGGCAAAAAGGGACAGTCGAGAACA
CCAACAAGCGCATTCGACGCTTCCTGCCAGGCACCACAGATCTGGCAGTTGTGTCGCAACGCGACCTTCTCCACCTCACGCGTCATGTCAACGATCAACC
GCGCAAATGCCTCGGATACAGGACGCCGACCGAGGTGTTTATGGCGCATTTGCACGAAGATAGGTGATCCCCTACTCTGCAAAACAGGCGTGATGCACTT
GGGTTAGCTTTTCCAC
CCGGCGACGCCTACATCAGCTGGTGGCGGCAAAAGTTCCCGTCAACGAGATGGCACGTCAGCTTGGCCGTCATCGCTCGACGATTTACCGCGAGATCAAG
CGCAATACGTTTCACGACCGTGAACTGCCGGACTACAACGGTTATTACAGCACGGTTGCGAACGACATTGCGCAGGACCGACGTCGCCGGCTGAGAAAGC
TGCGGCGCCACCCGACCTTGCGCACAGAGATCATCAACCAGTTGGAGGCTCGCTGGTCGCCGGAACAGATTGCCGGACGCCTGCTGTCGGACGGCCTCAG
TCGTATTCGCGTTTGCAAGGAGACAATCTATCGCTTCATCTACAGCAAGGAAGATTATGGGCTTGGTCTCTATCAGTATCTACCGGAGGCACGCCGCAAA
CGTCGTGCAATGCGCTCCAGGAAGCCGCGCGACGGTGCGTTTCCAGCCACGCACCGCATATCCCAACGGCCTGATTTTGTTGGAGATAGATCGCGGTTTG
GCCATTGGGAGGGTGACCTTCTCATCTTCGAACGCCCACTCGGCCATGCCAATATCACCACTCTCGTCGAGCGCAAGAGCCGCTATACCGTTCTCATCAA
GAATCCGAGCCGGCACTCGCGCCCAATCATGGACAAGATCATCAGAGCGTTTTCTCCTTTGCCGGCGTTCGCGCGTCAAAGCTTCACGTTGAATCGAGGG
ACCGAGTTTGCCGGGTTCAGGGCTTTGGAAGAAGGGATCGGTGCGTGCAGTTGGTTTTGCGACCCAAGTGCGCCTTGGCAAAAAGGGACAGTCGAGAACA
CCAACAAGCGCATTCGACGCTTCCTGCCAGGCACCACAGATCTGGCAGTTGTGTCGCAACGCGACCTTCTCCACCTCACGCGTCATGTCAACGATCAACC
GCGCAAATGCCTCGGATACAGGACGCCGACCGAGGTGTTTATGGCGCATTTGCACGAAGATAGGTGATCCCCTACTCTGCAAAACAGGCGTGATGCACTT
GGGTTAGCTTTTCCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1002 bp | 333 aa | 66 | 1067 | + | No |
Chemistry : DDE
ORF sequence :
MSRCYMQLALADRRRLHQLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYNGYYSTVANDIAQDRRRRLRKLRRHPTLRTEIINQLEARWSPE
QIAGRLLSDGLSRIRVCKETIYRFIYSKEDYGLGLYQYLPEARRKRRAMRSRKPRDGAFPATHRISQRPDFVGDRSRFGHWEGDLLIFERPLGHANITTL
VERKSRYTVLIKNPSRHSRPIMDKIIRAFSPLPAFARQSFTLNRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGTTDLAVVSQRD
LLHLTRHVNDQPRKCLGYRTPTEVFMAHLHEDR
QIAGRLLSDGLSRIRVCKETIYRFIYSKEDYGLGLYQYLPEARRKRRAMRSRKPRDGAFPATHRISQRPDFVGDRSRFGHWEGDLLIFERPLGHANITTL
VERKSRYTVLIKNPSRHSRPIMDKIIRAFSPLPAFARQSFTLNRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGTTDLAVVSQRD
LLHLTRHVNDQPRKCLGYRTPTEVFMAHLHEDR
Blast result :
Comments
ISRle2 is 54% aa similar to ISLxx5.
References
1] Young,J.W., Crossman,L.C., Johnston,A.W.B., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R.J., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,A., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J.
(2006) Genome Biol. 7, R4-R4
(2006) Genome Biol. 7, R4-R4