ISPpr8
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_006370 | ND | Photobacterium profundum | Photobacterium profundum |
DNA section
IS Length : 1364 bp
Ends
IR Length : 13
IRL : agaataatggTATGGACCCTCTCCCCCCAATCGGCTTCAAATGAGCCATA
IRR : ------cataTATGGACCCTCTCGCATTGCAAGGCATAATGATGAAGATT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
AGAATAATGGTATGGACCCTCTCCCCCCAATCGGCTTCAAATGAGCCATATTGAAGTTGATGTTCAATAGCGCAGAGAGGGTCACATGAATAGTTTAACG
ATTGGTTTAGATACTGCAAAGTCTGTCTTTCATGCCGTTGAAAAAAACAGTAGAGGGCGTGTACTGAGCAAAGCCAAACTAACACGAGCTAAGTTATTTA
CTTATTTTGCGAATAAACCACCCTGTACAGTTGCTTTAGAAGCTTGCGGAGCCAGCCATTATTGGTGTCGAGTAATCTCAGCCTATGGTCATAAGGCTGT
CATGATTGCTCCCCAGTATGTTGCAAGTCATCGTAAAGGCAATAAAAATGATTTTAACGACGCGAATGCTATTGCGGATGTTGCCCAGCGGGATGATATA
AGGACAGTTCCGTACAAAAGTATTGAACAGCAAGATATTCAATTACTGCATAGAGTAAGGGAACGGCTTGTAAGGCAGAGAACAGCTTTAGGTAATCAGA
CTCGAGGATTATTATCAGAATATGGCATTGTTCTTCGCCAAGGGTTAGCCCATCTTCGCAAAGAATTACCGTTTATTCTGGAAGAGAGTAATAATGAGCT
TACTGAGTTAGCCCGCCGCCAGTTCTTTTTATTACATGAAGAGCTCCTTGTTTTAGATGAGAAGGTAAAGCAAGCCGATAATGAAATACAGCGAGTTGCA
CTTTCACACCCTATATCACAGCGGTTAATGACAATGTCAGGTGTTGGACCGATTATCTCTACAATACTTTTGGTTGCGCTAGGTAAAGGTGAGCACTTCC
GAAATGGTCGCCACTTTTCCGCTTGGTGTGGTTTAGTTCCTAAGCAACATTCTACCGGAGATAAGGCGCGTTTATTAGGGATAAGTAAGCGAGGTAATAC
TTACATTCGAACTCAATTGATCAATGGCGCTAGAAGTGCATTGAGAAATGCGAGTAATAAAAATGATCAAGTTAGCCGTTGGGCAGCGAGCCTGGCAGAG
CGAATAGGTTTTAACAAAGCCTGTGTTGCTTTGGCGAATAAAATGGCAAGATTCGCTTGGGCGATGGTACATAATGGACAAGATTATCAGCTAAAACCTT
AACCCACATAATGTAAGTTAAGGCTAAATACATCCACTCACTGAATTGCACAAGACATGATATTGATGATTAAAGGCTCATAACCACCTTATAAAACTCA
GGTAATACCAAAGGCTGTAAGGCCGTTAGAATGATATGAAGATAAGGTGCGAAATCCATCAGGGCTAGAGAATTCACATTCTCAACTAAGCCGAATATAT
GGCAGCAAACGAGTTTCATTAATCTTCATCATTATGCCTTGCAATGCGAGAGGGTCCATATATG
ATTGGTTTAGATACTGCAAAGTCTGTCTTTCATGCCGTTGAAAAAAACAGTAGAGGGCGTGTACTGAGCAAAGCCAAACTAACACGAGCTAAGTTATTTA
CTTATTTTGCGAATAAACCACCCTGTACAGTTGCTTTAGAAGCTTGCGGAGCCAGCCATTATTGGTGTCGAGTAATCTCAGCCTATGGTCATAAGGCTGT
CATGATTGCTCCCCAGTATGTTGCAAGTCATCGTAAAGGCAATAAAAATGATTTTAACGACGCGAATGCTATTGCGGATGTTGCCCAGCGGGATGATATA
AGGACAGTTCCGTACAAAAGTATTGAACAGCAAGATATTCAATTACTGCATAGAGTAAGGGAACGGCTTGTAAGGCAGAGAACAGCTTTAGGTAATCAGA
CTCGAGGATTATTATCAGAATATGGCATTGTTCTTCGCCAAGGGTTAGCCCATCTTCGCAAAGAATTACCGTTTATTCTGGAAGAGAGTAATAATGAGCT
TACTGAGTTAGCCCGCCGCCAGTTCTTTTTATTACATGAAGAGCTCCTTGTTTTAGATGAGAAGGTAAAGCAAGCCGATAATGAAATACAGCGAGTTGCA
CTTTCACACCCTATATCACAGCGGTTAATGACAATGTCAGGTGTTGGACCGATTATCTCTACAATACTTTTGGTTGCGCTAGGTAAAGGTGAGCACTTCC
GAAATGGTCGCCACTTTTCCGCTTGGTGTGGTTTAGTTCCTAAGCAACATTCTACCGGAGATAAGGCGCGTTTATTAGGGATAAGTAAGCGAGGTAATAC
TTACATTCGAACTCAATTGATCAATGGCGCTAGAAGTGCATTGAGAAATGCGAGTAATAAAAATGATCAAGTTAGCCGTTGGGCAGCGAGCCTGGCAGAG
CGAATAGGTTTTAACAAAGCCTGTGTTGCTTTGGCGAATAAAATGGCAAGATTCGCTTGGGCGATGGTACATAATGGACAAGATTATCAGCTAAAACCTT
AACCCACATAATGTAAGTTAAGGCTAAATACATCCACTCACTGAATTGCACAAGACATGATATTGATGATTAAAGGCTCATAACCACCTTATAAAACTCA
GGTAATACCAAAGGCTGTAAGGCCGTTAGAATGATATGAAGATAAGGTGCGAAATCCATCAGGGCTAGAGAATTCACATTCTCAACTAAGCCGAATATAT
GGCAGCAAACGAGTTTCATTAATCTTCATCATTATGCCTTGCAATGCGAGAGGGTCCATATATG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1017 bp | 338 aa | 86 | 1102 | + | No |
Chemistry : DEDD
ORF sequence :
MNSLTIGLDTAKSVFHAVEKNSRGRVLSKAKLTRAKLFTYFANKPPCTVALEACGASHYWCRVISAYGHKAVMIAPQYVASHRKGNKNDFNDANAIADVA
QRDDIRTVPYKSIEQQDIQLLHRVRERLVRQRTALGNQTRGLLSEYGIVLRQGLAHLRKELPFILEESNNELTELARRQFFLLHEELLVLDEKVKQADNE
IQRVALSHPISQRLMTMSGVGPIISTILLVALGKGEHFRNGRHFSAWCGLVPKQHSTGDKARLLGISKRGNTYIRTQLINGARSALRNASNKNDQVSRWA
ASLAERIGFNKACVALANKMARFAWAMVHNGQDYQLKP
QRDDIRTVPYKSIEQQDIQLLHRVRERLVRQRTALGNQTRGLLSEYGIVLRQGLAHLRKELPFILEESNNELTELARRQFFLLHEELLVLDEKVKQADNE
IQRVALSHPISQRLMTMSGVGPIISTILLVALGKGEHFRNGRHFSAWCGLVPKQHSTGDKARLLGISKRGNTYIRTQLINGARSALRNASNKNDQVSRWA
ASLAERIGFNKACVALANKMARFAWAMVHNGQDYQLKP
Blast result :
Comments
The inverted repeats are not at the termini of the IS but at 10 nt on the left end and at 4 nt on the right end.
ISPpr8 is 61% aa similar to ISAzvi2.
ISPpr8 is 61% aa similar to ISAzvi2.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Bartlett,D. and Valle,G.(2004) Direct submission GenBank.