ISPpr7
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006370 | ND | Photobacterium profundum | Photobacterium profundum SS9 |
DNA section
IS Length : 1665 bp
Ends
IR Length : 17/25
IRL : CCCCCTGTGTCAGACTACTTGTCGCTTCTAATTTTCATTAGAGGTATTAA
IRR : CGGCGATTTTCAAGCTACTTGTCGCCTGTTAGTTAAATATTATGCCGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACACTCTCT | TTAA | AGAACACCGT | 4 |
AAGAAATTAG | ATCT | AGAATACCGC | 4 |
ATGAAAATCG | TATA | AAAGGCGAGG | 4 |
TCTGTTCCAG | ATTA | TTGTTATCAT | 4 |
AATGGAGAAG | GGAG | AAAGGCAAAG | 4 |
CATCAAGTGC | CTGGCGGCGA | 0 | |
ATTCACTCTT | AAACCGGCAA | 0 | |
ACTTGGGTAC | ATAGCTGCCA | 0 |
DNA sequence
CCCCCTGTGTCAGACTACTTGTCGCTTCTAATTTTCATTAGAGGTATTAAAAATGAGTGTAAAATTCACCGAAGCATTTAAGATACAAGCTGTTCAAAAA
GCACTTAACCGATCTGCTGACAGTAACATTAAAGACGTTGCTGACTCATTAGGTGTTGGCTTTTCAACCTTAACCAAATGGATCCGACAAGCCAAAAATC
ATGAATTTGAAATGGCTTCAGAAGCTGAGTTAAAAATGATGTCTAATGAGAAACGTCCACAAGATTGGACTCTAGAAGAACGACTTGAAATTATCATCCA
GTGTGCTGCCTTGGATGAGAAAGCTATCAATGAATTGTGTCGTGAAAGCGGCATTTATCCTCATCATATTCAGCAATGGAAGACGGATTTTGTTAATGGC
AAAAAATCATCTTCAGTAACACCAAGATCGGGTGAAGTGAAAGAGCTGAAAATAGAGAATAAAGCACTTAAAAAAGAGTTAAACCGCAAGGATAAAGCGC
TGGCTGAAACGGCCGCATTGTTAGTTCTCCAAAAAAAAGTAAACGCCATCTGGGGAGCCGACGAGGACAGCTAATAACAAACAGCGAACGTGAAGAAATC
CTTAGCTTGATCAACGAGGCTCAGGCAACAGGAGCTCGGCAGTCTCAAGCCTGTAAAATTATTGGCCTGAATTCAAAAACCATACAGCGCTGGAAATATA
ACGATAATACTCATGACAAACGGCTAAATGCTCAAAGGGCACCCAAAAACAAGCTAACAGACTTGGAGAGGCAACGTATTATTAATGTTGCCAATGAAGC
TACATATGCAAATTTACCACCGAATCAGATAGTGCCGATACTGGCAGATAAAGGGATTTATCTGGGTTCTGAGTCAACATTTTATCGGATTTTAAAAGCA
CATAAGCTACTAAATCATAGACAACGGAGCAAACCGTGCCAGAAAGTAAAAAAACCAAAAGCATTGGTTGCAACGGGCCCAAACCAAGTCTACACATGGG
ATATTACCTATTTGCCGACAACAGTGAAGGGATTATTTTTCTACCTTTATATGGTTATGGACGTTTTCAGTAGAAAAGTTGTTGGCTGGCAGGTACATGA
TAATGAGTCGAGTGCCTTAGCAGCAGATTTGATGACTGACATTTGTAAACGTGAGGACATTAAACGAGGCCAGGTGGTACTACATTCGGATAACGGTAGT
CCGATGAAGGGAGCGACAATGTTAGCCACACTGCAAGAGTTAGGTGTTATGCCATCGCTGAGCAGGCCGTCTGTAAGTAATGATAATCCGTATTCAGAGT
CACTGTTTAGAACGTTAAAATACCGTCCTGAGTACCCTGAAAAAGCCTTTGAGAATATAGCCTCATCACGTCGTTGGGTAAGTGATTTTGTTTGTTGGTA
TAACAATGAACACCGACATAGCGGGATTAAGTTTGTTACGCCAGCACAACGTCATACAGGGAGAGATATCGAAATTTTAGCGCAACGAACTCGGTTATAT
CATGCTGCGAAAGCACGACATCCAGAGCGATGGCGTGGCAATATTAAAAATTTAGAACCAGTAGGCTCTGTATACCTGAATCCTGAAAAAGGGAAAGCTA
ATAGCAAAGAGGTCGAGGCGGCATAATATTTAACTAACAGGCGACAAGTAGCTTGAAAATCGCCG
GCACTTAACCGATCTGCTGACAGTAACATTAAAGACGTTGCTGACTCATTAGGTGTTGGCTTTTCAACCTTAACCAAATGGATCCGACAAGCCAAAAATC
ATGAATTTGAAATGGCTTCAGAAGCTGAGTTAAAAATGATGTCTAATGAGAAACGTCCACAAGATTGGACTCTAGAAGAACGACTTGAAATTATCATCCA
GTGTGCTGCCTTGGATGAGAAAGCTATCAATGAATTGTGTCGTGAAAGCGGCATTTATCCTCATCATATTCAGCAATGGAAGACGGATTTTGTTAATGGC
AAAAAATCATCTTCAGTAACACCAAGATCGGGTGAAGTGAAAGAGCTGAAAATAGAGAATAAAGCACTTAAAAAAGAGTTAAACCGCAAGGATAAAGCGC
TGGCTGAAACGGCCGCATTGTTAGTTCTCCAAAAAAAAGTAAACGCCATCTGGGGAGCCGACGAGGACAGCTAATAACAAACAGCGAACGTGAAGAAATC
CTTAGCTTGATCAACGAGGCTCAGGCAACAGGAGCTCGGCAGTCTCAAGCCTGTAAAATTATTGGCCTGAATTCAAAAACCATACAGCGCTGGAAATATA
ACGATAATACTCATGACAAACGGCTAAATGCTCAAAGGGCACCCAAAAACAAGCTAACAGACTTGGAGAGGCAACGTATTATTAATGTTGCCAATGAAGC
TACATATGCAAATTTACCACCGAATCAGATAGTGCCGATACTGGCAGATAAAGGGATTTATCTGGGTTCTGAGTCAACATTTTATCGGATTTTAAAAGCA
CATAAGCTACTAAATCATAGACAACGGAGCAAACCGTGCCAGAAAGTAAAAAAACCAAAAGCATTGGTTGCAACGGGCCCAAACCAAGTCTACACATGGG
ATATTACCTATTTGCCGACAACAGTGAAGGGATTATTTTTCTACCTTTATATGGTTATGGACGTTTTCAGTAGAAAAGTTGTTGGCTGGCAGGTACATGA
TAATGAGTCGAGTGCCTTAGCAGCAGATTTGATGACTGACATTTGTAAACGTGAGGACATTAAACGAGGCCAGGTGGTACTACATTCGGATAACGGTAGT
CCGATGAAGGGAGCGACAATGTTAGCCACACTGCAAGAGTTAGGTGTTATGCCATCGCTGAGCAGGCCGTCTGTAAGTAATGATAATCCGTATTCAGAGT
CACTGTTTAGAACGTTAAAATACCGTCCTGAGTACCCTGAAAAAGCCTTTGAGAATATAGCCTCATCACGTCGTTGGGTAAGTGATTTTGTTTGTTGGTA
TAACAATGAACACCGACATAGCGGGATTAAGTTTGTTACGCCAGCACAACGTCATACAGGGAGAGATATCGAAATTTTAGCGCAACGAACTCGGTTATAT
CATGCTGCGAAAGCACGACATCCAGAGCGATGGCGTGGCAATATTAAAAATTTAGAACCAGTAGGCTCTGTATACCTGAATCCTGAAAAAGGGAAAGCTA
ATAGCAAAGAGGTCGAGGCGGCATAATATTTAACTAACAGGCGACAAGTAGCTTGAAAATCGCCG
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
522 bp | 173 aa | 53 | 574 | + | No |
Description : First part of the transposase
ORF sequence :
MSVKFTEAFKIQAVQKALNRSADSNIKDVADSLGVGFSTLTKWIRQAKNHEFEMASEAELKMMSNEKRPQDWTLEERLEIIIQCAALDEKAINELCRESG
IYPHHIQQWKTDFVNGKKSSSVTPRSGEVKELKIENKALKKELNRKDKALAETAALLVLQKKVNAIWGADEDS
IYPHHIQQWKTDFVNGKKSSSVTPRSGEVKELKIENKALKKELNRKDKALAETAALLVLQKKVNAIWGADEDS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1119 bp | 372 aa | 508 | 1626 | + | No |
Description : Second part of the transposase
ORF sequence :
NGRIVSSPKKSKRHLGSRRGQLITNSEREEILSLINEAQATGARQSQACKIIGLNSKTIQRWKYNDNTHDKRLNAQRAPKNKLTDLERQRIINVANEATY
ANLPPNQIVPILADKGIYLGSESTFYRILKAHKLLNHRQRSKPCQKVKKPKALVATGPNQVYTWDITYLPTTVKGLFFYLYMVMDVFSRKVVGWQVHDNE
SSALAADLMTDICKREDIKRGQVVLHSDNGSPMKGATMLATLQELGVMPSLSRPSVSNDNPYSESLFRTLKYRPEYPEKAFENIASSRRWVSDFVCWYNN
EHRHSGIKFVTPAQRHTGRDIEILAQRTRLYHAAKARHPERWRGNIKNLEPVGSVYLNPEKGKANSKEVEAA
ANLPPNQIVPILADKGIYLGSESTFYRILKAHKLLNHRQRSKPCQKVKKPKALVATGPNQVYTWDITYLPTTVKGLFFYLYMVMDVFSRKVVGWQVHDNE
SSALAADLMTDICKREDIKRGQVVLHSDNGSPMKGATMLATLQELGVMPSLSRPSVSNDNPYSESLFRTLKYRPEYPEKAFENIASSRRWVSDFVCWYNN
EHRHSGIKFVTPAQRHTGRDIEILAQRTRLYHAAKARHPERWRGNIKNLEPVGSVYLNPEKGKANSKEVEAA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1574 bp | 524 aa | 53 | 1626 | + | Yes |
Chemistry : DDE
ORF sequence :
MSVKFTEAFKIQAVQKALNRSADSNIKDVADSLGVGFSTLTKWIRQAKNHEFEMASEAELKMMSNEKRPQDWTLEERLEIIIQCAALDEKAINELCRESG
IYPHHIQQWKTDFVNGKKSSSVTPRSGEVKELKIENKALKKELNRKDKALAETAALLVLQKKSKRHLGSRRGQLITNSEREEILSLINEAQATGARQSQA
CKIIGLNSKTIQRWKYNDNTHDKRLNAQRAPKNKLTDLERQRIINVANEATYANLPPNQIVPILADKGIYLGSESTFYRILKAHKLLNHRQRSKPCQKVK
KPKALVATGPNQVYTWDITYLPTTVKGLFFYLYMVMDVFSRKVVGWQVHDNESSALAADLMTDICKREDIKRGQVVLHSDNGSPMKGATMLATLQELGVM
PSLSRPSVSNDNPYSESLFRTLKYRPEYPEKAFENIASSRRWVSDFVCWYNNEHRHSGIKFVTPAQRHTGRDIEILAQRTRLYHAAKARHPERWRGNIKN
LEPVGSVYLNPEKGKANSKEVEAA
IYPHHIQQWKTDFVNGKKSSSVTPRSGEVKELKIENKALKKELNRKDKALAETAALLVLQKKSKRHLGSRRGQLITNSEREEILSLINEAQATGARQSQA
CKIIGLNSKTIQRWKYNDNTHDKRLNAQRAPKNKLTDLERQRIINVANEATYANLPPNQIVPILADKGIYLGSESTFYRILKAHKLLNHRQRSKPCQKVK
KPKALVATGPNQVYTWDITYLPTTVKGLFFYLYMVMDVFSRKVVGWQVHDNESSALAADLMTDICKREDIKRGQVVLHSDNGSPMKGATMLATLQELGVM
PSLSRPSVSNDNPYSESLFRTLKYRPEYPEKAFENIASSRRWVSDFVCWYNNEHRHSGIKFVTPAQRHTGRDIEILAQRTRLYHAAKARHPERWRGNIKN
LEPVGSVYLNPEKGKANSKEVEAA
Blast result :
Comments
ISPpr7 is 55%(ORF A) and 69% (ORF B) aa similar to IS1240. The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: September 13 2013. Extremities were modified, the proposed ends for this sequence are based on the similarities with closely relative elements.
File updated: September 13 2013. Extremities were modified, the proposed ends for this sequence are based on the similarities with closely relative elements.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Bartlett,D. and Valle,G. (2004) Direct submission Genbank.