ISFtu6

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Francisella tularensis
Francisella tularensis subsp novicida U112
DNA section
IS Length : 711 bp

Ends


IR Length : 18/19

IRL : GGGGCTGTCCTAGATAACTAAGTTATGTTAGGATGGTTTTGATGAGAAGA
IRR : GGGGCTGTCCTAGATAAGTTTACTTTAAAGTCTCTCTAACCCAGTGTCTA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTACAATTTAAAATAATATTCATA8
AAGATTTATTAAGAAAAAACTTATCT8

DNA sequence

GGGGCTGTCCTAGATAACTAAGTTATGTTAGGATGGTTTTGATGAGAAGAAGTAGGTTAAGTTCATATAAACAAGAGAAGTTAATAGAGTTATTTATAGC
AGGAAGTACAGCACGAACTGCATCAGAATTAGTATCAGTAAATAAAACTACAGCCAGCTATTATTTTCATAGATTAAGATTACTTATTTATCAAAACAGT
GCGCATTTAGAAATGTTTGCTGGAGAAATTGAAGTAGATGAAAGTTACTTTGGAGGAACTCGTAAAGGAAAACGAGGTAGAGGAGCTGGTGGTAAAGTTC
CTGTATTTGGTTTACTTAAACGTAATGGGAAGGTATACACAGTAATTATTCCAGATGCTAAGAGTGATACTTTATTACCAATAATTAGAGAAAAGGTTAA
GCCTGATAGTATCGTTTACACAGATACCTTTAGAAGCTATAATGCACTAGATGTATCTGAGTTTAAACATTACAGAATTAATCATAGTAAGTTATTTGCT
AAAAAGCATAATCACATAAATGGTATAGAGAATTTTTGGAATCAAGCAAAGAGACATTTGAGGAAATTTAATTGTATTCCTAGAGAACATTTTCACTTGT
TTTTGAAGGAATGTGAGTGGAGATTTAACCACAGTGATTCTAAACAGCAACTAAAGCTAATTAGACACTGGGTTAGAGAGACTTTAAAGTAAACTTATCT
AGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
657 bp219 aa33689+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVLMRRSRLSSYKQEKLIELFIAGSTARTASELVSVNKTTASYYFHRLRLLIYQNSAHLEMFAGEIEVDESYFGGTRKGKRGRGAGGKVPVFGLLKRNGK
VYTVIIPDAKSDTLLPIIREKVKPDSIVYTDTFRSYNALDVSEFKHYRINHSKLFAKKHNHINGIENFWNQAKRHLRKFNCIPREHFHLFLKECEWRFNH
SDSKQQLKLIRHWVRETLK

 

Blast result :
Comments
ISFtu6 is 86% aa similar to ISHpa1.
References
1] Haugen, E. (2006) Direct submission.