ISCsp1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY639948 ND Comamonas sp
Comamonas sp
DNA section
IS Length : 1393 bp

Ends


IR Length : 22/29

IRL : GAGCCTGTCAGGAATTTTGTGTGTGAGGCATACGATGACCACCAGGAGCA
IRR : GGGGCTGTCTGAATTTTTGTGTGCAAGGCGCTGCGTAGACTTGTCCACGG

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCCATCGCCNNNNNNNNNN8

DNA sequence

GAGCCTGTCAGGAATTTTGTGTGTGAGGCATACGATGACCACCAGGAGCATGTATGCCAAGCAAGAAGAAGCCGGCGGCGCAGTTGCCGGCGATCCCCCA
AGAACTCATTGATCAATTCGTCACTGGCCCGATGAGCGCCGAGGCGGTGCAAGCCGCCTCGATGGCCTTCAAGAAGGCCTTGATCGAGCGTGCGCTGGGC
GCGGAGATGTCCCATCACCTGGGCTATCCACCCGGGGCGGCCAGGCCCGAGGAGGCGGGCAACCACCGCAACGGCCGCAGCGCCAAGACCGTGCTGACCG
AGGACGGGCCCTTGCGCATCGAGGTGCCGCGCGATCGCCAGGGCAGTTTCGAGCCGATCCTCATCCCCAAGCACGAGCGGCGCTTCACCGGCTTTGACGA
CAAGATCATCGCCATGTACGCGCGCGGCATGACGGTGCGCGAGATCCGAGCCTTCCTGGCCGAGCAGTACGCCACCGAGGTGTCGCCCGAGTTCATCAGT
TCGGTCACCGATGAGGTCATGGCCGAGGTCACGGCCTGGCAGGGCCGCCCGCTGGAGCCGATGTACCCGGTGGTGTTCTTCGATGCGCTGCGCGTGAAGA
TCCGCGAGGACGCGGTGGTGCGCAACAAGGCCGTCTACCTGGCCCTGGGCGTATTGCCCGACGGCACCCGCGACATCCTGGGGCTGTGGATCGAGAACAC
CGAGGGGGCCAAGTTCTGGCTGAAGGTGTTCAACGACCTGAAGACGCGCGGCGTGGACGACATCCTGATCGCCGTCACCGATGGCCTCAAGGGCTTGCCC
GAGGCCCTGGCGGCGGTGTTCCCGGCCACCACGCTGCAAACGTGCATCGTGCACCTGATCCGCAACAGCCTGGACTTTGCGAGCTGGAAGGAGCGCAAGC
TGCTGGCGGCGGCCTTGAAGCCGATCTACACGGCGCCCAGCGCCGAGGCGGCAGCGGCCGAGCTCGATGCCTTCGAGGCCCGCAAGTTCCCCACGGTGGT
GGCAGCGTGGCGCCGGGCCTGGGACCGGGTGATTCCATTCTTCGCGTTCGCGCCGTCCATTCGCCGGGTGATCTACACGACCAACGCCATCGAGAGCATC
AACGCGCGGCTGCGCAAGATCATCAAGACGCGAGGGCACTTCCCCAGTGATGATGCGGCTGCCAAGCTGATCTGGCTGGCGCTGCGCAACATCACGGCCG
ACTGGGGGCGTGCGGCCAAGGAGTGGCGAGAGGCAATGAATCAATTTGCCATCGCCTACGGCGATCGCTTCATGCGAGCCGCCGTGTAGCATGAGACCGA
CTTGCCCACCGCGTCGGTCGTTCGTCGCAGGCGACGCCCGCCGCCGTGGACAAGTCTACGCAGCGCCTTGCACACAAAAATTCAGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1246 bp411 aa441289+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPSKKKPAAQLPAIPQELIDQFVTGPMSAEAVQAASMAFKKALIERALGAEMSHHLGYPPGAARPEEAGNHRNGRSAKTVLTEDGPLRIEVPRDRQGSFE
PILIPKHERRFTGFDDKIIAMYARGMTVREIRAFLAEQYATEVSPEFISSVTDEVMAEVTAWQGRPLEPMYPVVFFDALRVKIREDAVVRNKAVYLALGV
LPDGTRDILGLWIENTEGAKFWLKVFNDLKTRGVDDILIAVTDGLKGLPEALAAVFPATTLQTCIVHLIRNSLDFASWKERKLLAAALKPIYTAPSAEAA
AAELDAFEARKFPTVVAAWRRAWDRVIPFFAFAPSIRRVIYTTNAIESINARLRKIIKTRGHFPSDDAAAKLIWLALRNITADWGRAAKEWREAMNQFAI
AYGDRFMRAAV

 

Blast result :
Comments
ISCsp1 is 89% aa similar to ISRso7. ISCsp1 was inserted in IS1071.
References
1] Providenti,M.A., Shaye,R.E., Lynes,K.D., McKenna,N.T., O'Brien,J.M., Rosolen,S., Wyndham,R.C. and Lambert,I.B. (2006) Appl. Environ. Microbiol. 72 (4), 2651-2660