ISCsp1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY639948 | ND | Comamonas sp | Comamonas sp |
DNA section
IS Length : 1393 bp
Ends
IR Length : 22/29
IRL : GAGCCTGTCAGGAATTTTGTGTGTGAGGCATACGATGACCACCAGGAGCA
IRR : GGGGCTGTCTGAATTTTTGTGTGCAAGGCGCTGCGTAGACTTGTCCACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CCATCGCC | NNNNNNNNNN | 8 |
DNA sequence
GAGCCTGTCAGGAATTTTGTGTGTGAGGCATACGATGACCACCAGGAGCATGTATGCCAAGCAAGAAGAAGCCGGCGGCGCAGTTGCCGGCGATCCCCCA
AGAACTCATTGATCAATTCGTCACTGGCCCGATGAGCGCCGAGGCGGTGCAAGCCGCCTCGATGGCCTTCAAGAAGGCCTTGATCGAGCGTGCGCTGGGC
GCGGAGATGTCCCATCACCTGGGCTATCCACCCGGGGCGGCCAGGCCCGAGGAGGCGGGCAACCACCGCAACGGCCGCAGCGCCAAGACCGTGCTGACCG
AGGACGGGCCCTTGCGCATCGAGGTGCCGCGCGATCGCCAGGGCAGTTTCGAGCCGATCCTCATCCCCAAGCACGAGCGGCGCTTCACCGGCTTTGACGA
CAAGATCATCGCCATGTACGCGCGCGGCATGACGGTGCGCGAGATCCGAGCCTTCCTGGCCGAGCAGTACGCCACCGAGGTGTCGCCCGAGTTCATCAGT
TCGGTCACCGATGAGGTCATGGCCGAGGTCACGGCCTGGCAGGGCCGCCCGCTGGAGCCGATGTACCCGGTGGTGTTCTTCGATGCGCTGCGCGTGAAGA
TCCGCGAGGACGCGGTGGTGCGCAACAAGGCCGTCTACCTGGCCCTGGGCGTATTGCCCGACGGCACCCGCGACATCCTGGGGCTGTGGATCGAGAACAC
CGAGGGGGCCAAGTTCTGGCTGAAGGTGTTCAACGACCTGAAGACGCGCGGCGTGGACGACATCCTGATCGCCGTCACCGATGGCCTCAAGGGCTTGCCC
GAGGCCCTGGCGGCGGTGTTCCCGGCCACCACGCTGCAAACGTGCATCGTGCACCTGATCCGCAACAGCCTGGACTTTGCGAGCTGGAAGGAGCGCAAGC
TGCTGGCGGCGGCCTTGAAGCCGATCTACACGGCGCCCAGCGCCGAGGCGGCAGCGGCCGAGCTCGATGCCTTCGAGGCCCGCAAGTTCCCCACGGTGGT
GGCAGCGTGGCGCCGGGCCTGGGACCGGGTGATTCCATTCTTCGCGTTCGCGCCGTCCATTCGCCGGGTGATCTACACGACCAACGCCATCGAGAGCATC
AACGCGCGGCTGCGCAAGATCATCAAGACGCGAGGGCACTTCCCCAGTGATGATGCGGCTGCCAAGCTGATCTGGCTGGCGCTGCGCAACATCACGGCCG
ACTGGGGGCGTGCGGCCAAGGAGTGGCGAGAGGCAATGAATCAATTTGCCATCGCCTACGGCGATCGCTTCATGCGAGCCGCCGTGTAGCATGAGACCGA
CTTGCCCACCGCGTCGGTCGTTCGTCGCAGGCGACGCCCGCCGCCGTGGACAAGTCTACGCAGCGCCTTGCACACAAAAATTCAGACAGCCCC
AGAACTCATTGATCAATTCGTCACTGGCCCGATGAGCGCCGAGGCGGTGCAAGCCGCCTCGATGGCCTTCAAGAAGGCCTTGATCGAGCGTGCGCTGGGC
GCGGAGATGTCCCATCACCTGGGCTATCCACCCGGGGCGGCCAGGCCCGAGGAGGCGGGCAACCACCGCAACGGCCGCAGCGCCAAGACCGTGCTGACCG
AGGACGGGCCCTTGCGCATCGAGGTGCCGCGCGATCGCCAGGGCAGTTTCGAGCCGATCCTCATCCCCAAGCACGAGCGGCGCTTCACCGGCTTTGACGA
CAAGATCATCGCCATGTACGCGCGCGGCATGACGGTGCGCGAGATCCGAGCCTTCCTGGCCGAGCAGTACGCCACCGAGGTGTCGCCCGAGTTCATCAGT
TCGGTCACCGATGAGGTCATGGCCGAGGTCACGGCCTGGCAGGGCCGCCCGCTGGAGCCGATGTACCCGGTGGTGTTCTTCGATGCGCTGCGCGTGAAGA
TCCGCGAGGACGCGGTGGTGCGCAACAAGGCCGTCTACCTGGCCCTGGGCGTATTGCCCGACGGCACCCGCGACATCCTGGGGCTGTGGATCGAGAACAC
CGAGGGGGCCAAGTTCTGGCTGAAGGTGTTCAACGACCTGAAGACGCGCGGCGTGGACGACATCCTGATCGCCGTCACCGATGGCCTCAAGGGCTTGCCC
GAGGCCCTGGCGGCGGTGTTCCCGGCCACCACGCTGCAAACGTGCATCGTGCACCTGATCCGCAACAGCCTGGACTTTGCGAGCTGGAAGGAGCGCAAGC
TGCTGGCGGCGGCCTTGAAGCCGATCTACACGGCGCCCAGCGCCGAGGCGGCAGCGGCCGAGCTCGATGCCTTCGAGGCCCGCAAGTTCCCCACGGTGGT
GGCAGCGTGGCGCCGGGCCTGGGACCGGGTGATTCCATTCTTCGCGTTCGCGCCGTCCATTCGCCGGGTGATCTACACGACCAACGCCATCGAGAGCATC
AACGCGCGGCTGCGCAAGATCATCAAGACGCGAGGGCACTTCCCCAGTGATGATGCGGCTGCCAAGCTGATCTGGCTGGCGCTGCGCAACATCACGGCCG
ACTGGGGGCGTGCGGCCAAGGAGTGGCGAGAGGCAATGAATCAATTTGCCATCGCCTACGGCGATCGCTTCATGCGAGCCGCCGTGTAGCATGAGACCGA
CTTGCCCACCGCGTCGGTCGTTCGTCGCAGGCGACGCCCGCCGCCGTGGACAAGTCTACGCAGCGCCTTGCACACAAAAATTCAGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1246 bp | 411 aa | 44 | 1289 | + | No |
Chemistry : DDE
ORF sequence :
MPSKKKPAAQLPAIPQELIDQFVTGPMSAEAVQAASMAFKKALIERALGAEMSHHLGYPPGAARPEEAGNHRNGRSAKTVLTEDGPLRIEVPRDRQGSFE
PILIPKHERRFTGFDDKIIAMYARGMTVREIRAFLAEQYATEVSPEFISSVTDEVMAEVTAWQGRPLEPMYPVVFFDALRVKIREDAVVRNKAVYLALGV
LPDGTRDILGLWIENTEGAKFWLKVFNDLKTRGVDDILIAVTDGLKGLPEALAAVFPATTLQTCIVHLIRNSLDFASWKERKLLAAALKPIYTAPSAEAA
AAELDAFEARKFPTVVAAWRRAWDRVIPFFAFAPSIRRVIYTTNAIESINARLRKIIKTRGHFPSDDAAAKLIWLALRNITADWGRAAKEWREAMNQFAI
AYGDRFMRAAV
PILIPKHERRFTGFDDKIIAMYARGMTVREIRAFLAEQYATEVSPEFISSVTDEVMAEVTAWQGRPLEPMYPVVFFDALRVKIREDAVVRNKAVYLALGV
LPDGTRDILGLWIENTEGAKFWLKVFNDLKTRGVDDILIAVTDGLKGLPEALAAVFPATTLQTCIVHLIRNSLDFASWKERKLLAAALKPIYTAPSAEAA
AAELDAFEARKFPTVVAAWRRAWDRVIPFFAFAPSIRRVIYTTNAIESINARLRKIIKTRGHFPSDDAAAKLIWLALRNITADWGRAAKEWREAMNQFAI
AYGDRFMRAAV
Blast result :
Comments
ISCsp1 is 89% aa similar to ISRso7. ISCsp1 was inserted in IS1071.
References
1] Providenti,M.A., Shaye,R.E., Lynes,K.D., McKenna,N.T., O'Brien,J.M., Rosolen,S., Wyndham,R.C. and Lambert,I.B. (2006) Appl. Environ. Microbiol. 72 (4), 2651-2660