ISCsp2

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DQ875599 ND Comamonas sp.
Comamonas sp. CNB-1 plasmid pCNB1
DNA section
IS Length : 1089 bp

Ends


IR Length : 19/24

IRL : NNGAGTTATTCTATTTAGCTCCAGTGACGTGAGAATAGCTGGATGGAAAC
IRR : AAGGGGTATCTATTTAGCTCCAGCAGCCCCATTGATACTGTGATTTCATC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

NNGAGTTATTCTATTTAGCTCCAGTGACGTGAGAATAGCTGGATGGAAACCCAGATGCTAACGCCAACTCCTGGAGGGGACTACCCCCGCACCTGGAACG
AATTTCTTGACTGGTTTGCCACCGAAGAGGCTTGCCAGGCGTTCCTGGAGAAGCTTCGGTGGCCCCAAGGCTTCGTCTGCCCGCGTTGCGGCAACGCTGG
CGATGTGTACCGCGCCAGCCGCACCCGCCTGATGTGCCGCTCATGCCAGTACCAAGGCACAGTGACATCTGGAACCATCTTTGACAAGACGCGCACACCG
CTGCGTGTCTGGCTGGCTGCAGCTTGGTACCTGACCAATCAGAAACAAGGCGTGAGCGCCCTGGGGCTGCAGCGCGTATTGGGTTTGGGGAGCTACCAGA
CCGCCTGGACCATGCTGCACCGGTTTCGACGTGCCATGGTCCGCCCGGGCCGGGACAAGCTCAAGGGGCTTGTGGAGGTGGATGAAACGTACCTGTCCAT
CACGGATCGCAAGAATCCCGCCACCCCTGCAGGGCGCAAGAGCAGCACCACCAAAGTGTTGATGGTCATGGCGGTGGAGATCGTGGAGCCCAAGGGGTTT
GGGCGCATCCGGTTACGCCGCATTGACCGAGACGCCGCCACCCACGTAATCCCCTTTGTGCAGGAGGTGGTCGAGCCTGGAGCCCAGGTACGCACGGATG
GTTCGGCGGCATACCGCGCTCTGGGAGAACTGGGTTACACCCACCAGCGCACCGTCATGCTCGGCTCAGGCGTACCTGCCCATGTCTCCATGGCGGGAGT
GCACCGGGTCGCCTCACTGGTACAGCGCTGGGTGCTGGGAACACATCATGGCTCTGTACAGCCAGACCACCTGGACGCCTATCTCGATGAATTCGTGTTC
CGTTTCAACCGGCGCACATCCAGCTCACGCGGGATGCTGTTTTACCGCTTGCTGCAGCAAGCGGTGGTTACGCCGCCAGTGACGTATGGGGATGTCGTGA
GCAAGAACACCGGGGAGAGCCAATCGGATACCATTGCTGGATGAAATCACAGTATCAATGGGGCTGCTGGAGCTAAATAGATACCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
990 bp329 aa531042+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTPTPGGDYPRTWNEFLDWFATEEACQAFLEKLRWPQGFVCPRCGNAGDVYRASRTRLMCRSCQYQGTVTSGTIFDKTRTPLRVWLAAAWYLTNQKQGV
SALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGRDKLKGLVEVDETYLSITDRKNPATPAGRKSSTTKVLMVMAVEIVEPKGFGRIRLRRIDRDAATHVIP
FVQEVVEPGAQVRTDGSAAYRALGELGYTHQRTVMLGSGVPAHVSMAGVHRVASLVQRWVLGTHHGSVQPDHLDAYLDEFVFRFNRRTSSSRGMLFYRLL
QQAVVTPPVTYGDVVSKNTGESQSDTIAG

 

Blast result :
Comments
ISCsp2 is 88% aa similar to ISPops3.
Two base pair are missing on the left end.
References
1] Liu,L., Liu,S. and Ma,Y (2006) Direct submission GenBank.