ISCsp2
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ875599 | ND | Comamonas sp. | Comamonas sp. CNB-1 plasmid pCNB1 |
DNA section
IS Length : 1089 bp
Ends
IR Length : 19/24
IRL : NNGAGTTATTCTATTTAGCTCCAGTGACGTGAGAATAGCTGGATGGAAAC
IRR : AAGGGGTATCTATTTAGCTCCAGCAGCCCCATTGATACTGTGATTTCATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
NNGAGTTATTCTATTTAGCTCCAGTGACGTGAGAATAGCTGGATGGAAACCCAGATGCTAACGCCAACTCCTGGAGGGGACTACCCCCGCACCTGGAACG
AATTTCTTGACTGGTTTGCCACCGAAGAGGCTTGCCAGGCGTTCCTGGAGAAGCTTCGGTGGCCCCAAGGCTTCGTCTGCCCGCGTTGCGGCAACGCTGG
CGATGTGTACCGCGCCAGCCGCACCCGCCTGATGTGCCGCTCATGCCAGTACCAAGGCACAGTGACATCTGGAACCATCTTTGACAAGACGCGCACACCG
CTGCGTGTCTGGCTGGCTGCAGCTTGGTACCTGACCAATCAGAAACAAGGCGTGAGCGCCCTGGGGCTGCAGCGCGTATTGGGTTTGGGGAGCTACCAGA
CCGCCTGGACCATGCTGCACCGGTTTCGACGTGCCATGGTCCGCCCGGGCCGGGACAAGCTCAAGGGGCTTGTGGAGGTGGATGAAACGTACCTGTCCAT
CACGGATCGCAAGAATCCCGCCACCCCTGCAGGGCGCAAGAGCAGCACCACCAAAGTGTTGATGGTCATGGCGGTGGAGATCGTGGAGCCCAAGGGGTTT
GGGCGCATCCGGTTACGCCGCATTGACCGAGACGCCGCCACCCACGTAATCCCCTTTGTGCAGGAGGTGGTCGAGCCTGGAGCCCAGGTACGCACGGATG
GTTCGGCGGCATACCGCGCTCTGGGAGAACTGGGTTACACCCACCAGCGCACCGTCATGCTCGGCTCAGGCGTACCTGCCCATGTCTCCATGGCGGGAGT
GCACCGGGTCGCCTCACTGGTACAGCGCTGGGTGCTGGGAACACATCATGGCTCTGTACAGCCAGACCACCTGGACGCCTATCTCGATGAATTCGTGTTC
CGTTTCAACCGGCGCACATCCAGCTCACGCGGGATGCTGTTTTACCGCTTGCTGCAGCAAGCGGTGGTTACGCCGCCAGTGACGTATGGGGATGTCGTGA
GCAAGAACACCGGGGAGAGCCAATCGGATACCATTGCTGGATGAAATCACAGTATCAATGGGGCTGCTGGAGCTAAATAGATACCCCTT
AATTTCTTGACTGGTTTGCCACCGAAGAGGCTTGCCAGGCGTTCCTGGAGAAGCTTCGGTGGCCCCAAGGCTTCGTCTGCCCGCGTTGCGGCAACGCTGG
CGATGTGTACCGCGCCAGCCGCACCCGCCTGATGTGCCGCTCATGCCAGTACCAAGGCACAGTGACATCTGGAACCATCTTTGACAAGACGCGCACACCG
CTGCGTGTCTGGCTGGCTGCAGCTTGGTACCTGACCAATCAGAAACAAGGCGTGAGCGCCCTGGGGCTGCAGCGCGTATTGGGTTTGGGGAGCTACCAGA
CCGCCTGGACCATGCTGCACCGGTTTCGACGTGCCATGGTCCGCCCGGGCCGGGACAAGCTCAAGGGGCTTGTGGAGGTGGATGAAACGTACCTGTCCAT
CACGGATCGCAAGAATCCCGCCACCCCTGCAGGGCGCAAGAGCAGCACCACCAAAGTGTTGATGGTCATGGCGGTGGAGATCGTGGAGCCCAAGGGGTTT
GGGCGCATCCGGTTACGCCGCATTGACCGAGACGCCGCCACCCACGTAATCCCCTTTGTGCAGGAGGTGGTCGAGCCTGGAGCCCAGGTACGCACGGATG
GTTCGGCGGCATACCGCGCTCTGGGAGAACTGGGTTACACCCACCAGCGCACCGTCATGCTCGGCTCAGGCGTACCTGCCCATGTCTCCATGGCGGGAGT
GCACCGGGTCGCCTCACTGGTACAGCGCTGGGTGCTGGGAACACATCATGGCTCTGTACAGCCAGACCACCTGGACGCCTATCTCGATGAATTCGTGTTC
CGTTTCAACCGGCGCACATCCAGCTCACGCGGGATGCTGTTTTACCGCTTGCTGCAGCAAGCGGTGGTTACGCCGCCAGTGACGTATGGGGATGTCGTGA
GCAAGAACACCGGGGAGAGCCAATCGGATACCATTGCTGGATGAAATCACAGTATCAATGGGGCTGCTGGAGCTAAATAGATACCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
990 bp | 329 aa | 53 | 1042 | + | No |
Chemistry : DDE
ORF sequence :
MLTPTPGGDYPRTWNEFLDWFATEEACQAFLEKLRWPQGFVCPRCGNAGDVYRASRTRLMCRSCQYQGTVTSGTIFDKTRTPLRVWLAAAWYLTNQKQGV
SALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGRDKLKGLVEVDETYLSITDRKNPATPAGRKSSTTKVLMVMAVEIVEPKGFGRIRLRRIDRDAATHVIP
FVQEVVEPGAQVRTDGSAAYRALGELGYTHQRTVMLGSGVPAHVSMAGVHRVASLVQRWVLGTHHGSVQPDHLDAYLDEFVFRFNRRTSSSRGMLFYRLL
QQAVVTPPVTYGDVVSKNTGESQSDTIAG
SALGLQRVLGLGSYQTAWTMLHRFRRAMVRPGRDKLKGLVEVDETYLSITDRKNPATPAGRKSSTTKVLMVMAVEIVEPKGFGRIRLRRIDRDAATHVIP
FVQEVVEPGAQVRTDGSAAYRALGELGYTHQRTVMLGSGVPAHVSMAGVHRVASLVQRWVLGTHHGSVQPDHLDAYLDEFVFRFNRRTSSSRGMLFYRLL
QQAVVTPPVTYGDVVSKNTGESQSDTIAG
Blast result :
Comments
ISCsp2 is 88% aa similar to ISPops3.
Two base pair are missing on the left end.
Two base pair are missing on the left end.
References
1] Liu,L., Liu,S. and Ma,Y (2006) Direct submission GenBank.